West Nile virus core protein: Tetramer structure and ribbon formation

Structure

Volumn 12, Issue 7, 2004, Pages 1157-1163

  Dokland, Terje ^a,b   Walsh, Martin ^c   Mackenzie, Jason M ^d   Khromykh, Alexander A ^d   Ee, Kim Huey ^a   Wang, Sifang ^a  

^a INSTITUTE OF MOLECULAR AND CELL BIOLOGY   (Singapore)

^b University of Alabama at Birmingham   (United States)

^c EUROPEAN SYNCHROTRON RADIATION FACILITY   (France)

^d UNIVERSITY OF QUEENSLAND   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN C; TETRAMER; VIRUS PROTEIN;

ALPHA HELIX; ANALYTIC METHOD; ARTICLE; CRYSTAL STRUCTURE; DIMERIZATION; ENZYME STRUCTURE; NONHUMAN; PRIORITY JOURNAL; PROTEIN STRUCTURE; RNA GENE; STRUCTURE ANALYSIS; VIRION; VIRUS ENVELOPE; VIRUS STRAIN; WEST NILE FLAVIVIRUS;

AMINO ACID SEQUENCE; CRYSTALLOGRAPHY, X-RAY; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, QUATERNARY; PROTEIN STRUCTURE, SECONDARY; VIRAL CORE PROTEINS; WEST NILE VIRUS;

FLAVIVIRIDAE; FLAVIVIRUS; RNA VIRUSES; WEST NILE VIRUS;

EID: 3142611054     PISSN: 09692126     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.str.2004.04.024     Document Type: Article

References (40)

1. Andrade M.A., Petosa C., O'Donoghue S.I., Müller C.W., Bork P. Comparison of ARM and HEAT protein repeats. J. Mol. Biol. 309:2001;1-18
2. Brinton M.A. The molecular biology of West Nile virus. a new invader of the western hemisphere Annu. Rev. Microbiol. 56:2002;371-402
3. Buckley A., Dawson A., Moss S.R., Hinsley S.A., Bellamy P.E., Gould E.A. Serological evidence of West Nile virus, Usuru virus and Sindbis virus infection of birds in the UK. J. Gen. Virol. 84:2003;2807-2817
4. CDC. (2004). West Nile Virus: Statistics, Surveillance and Control (Center for Disease Control). http://www.cdc.gov/ncidod/dvbid/westnile/ surv&control.htm.
5. Choi H.-K., Tong L., Minor W., Dumas P., Boege U., Rossmann M.G., Wengler G. Structure of Sindbis virus core protein reveals a chymotrypsin-like serine protease and the organization of the virion. Nature. 354:1991;37-43
6. Cowtan K., Main P. Miscellaneous algorithms for density modification. Acta Crystallogr. D Biol. Crystallogr. 54:1998;487-493
7. Doan D.N.P., Dokland T. Structure of the nucleocapsid protein of porcine reproductive and respiratory syndrome virus. Structure. 11:2003;1445-1451
8. Dokland T. Freedom and restraint. themes in virus capsid assembly Structure. 8:2000;R157-R167
9. Doublie S. Preparation of selenomethionyl proteins for phase determination. Methods Enzymol. 276:1997;523-530
10. Esnouf R.M. Further additions to MolScript version 1.4, including reading and contouring of electron-density maps. Acta Crystallogr. D Biol. Crystallogr. 55:1999;938-940
11. Ferlenghi I., Clarke M., Ruttan T., Allison S.L., Schalich J., Heinz F.X., Harrison S.C., Rey F.A., Fuller S.D. Molecular organization of a recombinant subviral particle from tick-borne encephalitis virus. Mol. Cell. 7:2001;593-602
12. Gouet P., Courcelle E., Stuart D.I., Metoz F. ESPript. analysis of multiple sequence alignments in PostScript Bioinformatics. 15:1999;305-308
13. Hall R.A., Nisbet D.J., Pham K.B., Pyke A.T., Smith G.A., Khromykh A.A. DNA vaccine coding for the full-length infectious Kunjin virus RNA protects mice against the New York strain of West Nile Virus. Proc. Natl. Acad. Sci. USA. 100:2003;10460-10464
14. Holm L., Sander C. Dali. a network tool for protein structure comparison Trends Biochem. Sci. 20:1995;345-347
15. Jones T.A., Zou J.-Y., Cowan S.W., Kjeldgaard M. Improved methods for the building of protein models in electron density and the location of errors in these models. Acta Crystallogr. A. 47:1991;110-119
16. Khromykh A.A., Westaway E.G. RNA binding properties of core protein of the flavivirus Kunjin. Arch. Virol. 141:1996;685-699
17. Kofler R.M., Heinz F.X., Mandl C.W. Capsid protein C of tick-borne encephalitis virus tolerates large internal deletions and is a favorable target for attenuation of virulence. J. Virol. 76:2002;3534-3543
18. Kofler R.M., Leitner A., O'Riordan G., Heinz F.X., Mandl C.W. Spontaneous mutations restore the viability of tick-borne encephalitis virus mutants with large deletions in protein C. J. Virol. 77:2003;443-451
19. Kosa P.F., Ghosh G., DeDecker B.S., Sigler P.B. The 2.1-Å crystal structure of an archeal preinitiation complex. TATA-box-binding protein/transcription factor (II)B core/TATA-box Proc. Natl. Acad. Sci. USA. 94:1997;6042-6047
20. Kuhn R.J., Zhang W., Rossmann M.G., Pletnev S.V., Corver J., Lenches E., Jones C.T., Mukhopadhyay S., Chipman P.R., Strauss E.G., et al. Structure of dengue virus. implications for flavivirus organization, maturation, and fusion Cell. 108:2002;717-725
21. Lanciotti R.S., Roehrig J.T., Deubel V., Smith J., Parker M., Steele K., Crise B., Volpe K.E., Crabtree M.B., Scherret J.H., et al. Origin of the West Nile virus responsible for an outbreak of encephalitis in the northeastern United States. Science. 286:1999;2333-2337
22. Lindenbach B.D., Rice C.M. Molecular biology of flaviviruses. Adv. Virus Res. 59:2002;23-61
23. Lobigs M., Lee E. Inefficient signalase cleavage promotes efficient nucleocapsid incorporation into budding flavivirus membranes. J. Virol. 78:2004;178-186
24. Ma L., Jones C.T., Groesch T.D., Kuhn R.J., Post C.B. Solution structure of dengue virus capsid protein reveals another fold. Proc. Natl. Acad. Sci. USA. 101:2004;3414-3419
25. Mackenzie J.M., Westaway E.G. Assembly and maturation of the flavivirus Kunjin virus appear to occur in the rough endoplasmic reticulum and along the secretory pathway, respectively. J. Virol. 75:2001;10787-10799
26. Marcotrigiano J., Lomakin I.B., Sonenberg N., Pestova T.V., Hellen C.U.T., Burley S.K. A conserved HEAT domain within eIF4G directs assembly of the translation initation machinery. Mol. Cell. 7:2001;193-203
27. Markoff L., Falgout B., Chang A. A conserved internal hydrophobic domain mediates the stable membrane integration of the dengue virus capsid protein. Virology. 233:1997;105-117
28. Modis Y., Ogata S., Clements D., Harrison S.C. A ligand-binding pocket in the dengue virus envelope glycoprotein. Proc. Natl. Acad. Sci. USA. 100:2003;6986-6991
29. Mukhopadhyay S., Kim B.S., Chipman P.R., Rossmann M.G., Kuhn R.J. Structure of West Nile virus. Science. 302:2003;248
30. Murshudov G.N., Vagin A.A., Dodson E.J. Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr. D Biol. Crystallogr. 53:1997;240-255
31. Otwinowski Z., Minor W. Processing of X-ray diffraction data collected in oscillation mode. Carter C.W. Jr., Sweet R.M. Methods Enzymology. 1997;307-326 Academic Press, San Diego
32. Petersen L.R., Marfin A.A., Gubler D.J. West Nile virus. JAMA. 290:2003;524-528
33. Rey F.A., Heinz F.X., Mandl C., Kunz C., Harrison S.C. The envelope glycoprotein from tick-borne encephalitis virus at 2Å resolution. Nature. 375:1995;291-298
34. Rudolph M.G., Kraus I., Dickmanns A., Eickmann M., Garten W., Ficner R. Crystal structure of the Borna virus nucleoprotein. Structure. 11:2003;1219-1226
35. Scherret J.H., Poidinger M., Mackenzie J.S., Broom A.K., Deubel V., Lipkin W.I., Briese T., Gould E.A., Hall R.A. The relationships between West Nile and Kunjin viruses. Emerg. Infect. Dis. 7:2001;697-705
36. Strauss J.H., Strauss E.G. Viruses and Human Disease. 2002;Academic Press, San Diego
37. Sugrue R.J., Fu J., Howe J., Chan Y.C. Expression of the dengue virus structural proteins in Pichia pastoris leads to the generation of virus-like particles. J. Gen. Virol. 78:1997;1861-1866
38. Terwilliger T.C. Automated structure solution, density modification and model building. Acta Crystallogr. D Biol. Crystallogr. 58:2002;1937-1940
39. Terwilliger T.C. Automated main-chain model building by template matching and iterative fragment extension. Acta Crystallogr. D Biol. Crystallogr. 59:2003;38-44
40. Zhang Y., Corver J., Chipman P.R., Zhang W., Pletnev S.V., Sedlak D., Baker T.S., Strauss J.H., Kuhn R.J., Rossmann M.G. Structures of immature flavivirus particles. EMBO J. 22:2003;2604-2613