Convergent recognition of the IgE binding site on the high-affinity IgE receptor

Structure

Volumn 12, Issue 7, 2004, Pages 1289-1301

  Stamos, Jennifer ^a   Eigenbrot, Charles ^a   Nakamura, Gerald R ^a   Reynolds, Mark E ^a   Yin, JianPing ^a   Lowman, Henry B ^a   Fairbrother, Wayne J ^a   Starovasnik, Melissa A ^a  

^a GENENTECH INC   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

IMMUNOGLOBULIN E RECEPTOR; PROLINE; TRYPTOPHAN;

ARTICLE; BINDING AFFINITY; BINDING SITE; CONTROLLED STUDY; MOLECULAR RECOGNITION; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PHAGE DISPLAY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN STRUCTURE; RECEPTOR BINDING; X RAY CRYSTALLOGRAPHY;

AMINO ACID SEQUENCE; BINDING, COMPETITIVE; CELLS, CULTURED; CRYSTALLOGRAPHY, X-RAY; HUMANS; IMMUNOGLOBULIN E; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MUTAGENESIS, SITE-DIRECTED; PEPTIDES; PROTEIN BINDING; PROTEIN CONFORMATION; RECEPTORS, IGE; RECOMBINANT FUSION PROTEINS;

EID: 3142606768     PISSN: 09692126     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.str.2004.04.015     Document Type: Article

References (34)

1. Babu K.S., Arshad S.H., Holgate S.T. Omalizumab, a novel anti-IgE therapy in allergic disorders. Expert Opin. Biol. Ther. 1:2001;1049-1058
2. Brünger A.T. X-PLOR. A System for X-Ray Crystallography and NMR, 3.1 Edition. 1992;Yale University Press, New Haven, CT
3. Case D.A. Calibration of ring-current effects in proteins and nucleic acids. J Biomol. NMR. 6:1995;341-346
4. Cavanagh J., Fairbrother W.J., Palmer A.G. III, Skelton N.J. Protein NMR Spectroscopy. Principles and Practice:1995;Academic Press, San Diego, CA
5. CCP4 The CCP4 (Collaborative Computational Project 4) suite. programs for protein crystallography Acta Crystallogr. D Biol. Crystallogr. 50:1994;760-763
6. DeLano W.L., Ultsch M.H., de Vos A.M., Wells J.A. Convergent solutions to binding at a protein-protein interface. Science. 287:2000;1279-1283
7. Dennis M.S., Roberge M., Quan C., Lazarus R.A. Selection and characterization of a new class of peptide exosite inhibitors of coagulation factor VIIa. Biochemistry. 40:2001;9513-9521
8. Garman S.C., Kinet J.P., Jardetzky T.S. Crystal structure of the human high-affinity IgE receptor. Cell. 95:1998;951-961
9. Garman S.C., Wurzburg B.A., Tarchevskaya S.S., Kinet J.P., Jardetzky T.S. Structure of the Fc fragment of human IgE bound to its high-affinity receptor FcεRIα Nature. 406:2000;259-266
10. Garman S.C., Sechi S., Kinet J.P., Jardetzky T.S. The analysis of the human high affinity IgE receptor from multiple crystal forms. J. Mol. Biol. 311:2001;1049-1062
11. Glaser F., Steinberg D.M., Vakser I.A., Ben-Tal N. Residue frequencies and pairing preferences at protein-protein interfaces. Proteins. 43:2001;89-102
12. Hakimi J., Seals C., Kondas J.A., Pettine L., Danho W., Kochan J. The α subunit of the human IgE receptor (FcERI) is sufficient for high affinity IgE binding. J. Biol. Chem. 265:1990;22079-22081
13. Huang X., Poy F., Zhang R., Joachimiak A., Sudol M., Eck M.J. Structure of a WW domain containing fragment of dystrophin in complex with β-dystroglycan. Nat. Struct. Biol. 7:2000;634-638
14. Kay B.K., Williamson M.P., Sudol M. The importance of being proline. the interaction of proline-rich motifs in signaling proteins with their cognate domains FASEB J. 14:2000;231-241
15. Kunkel T.A., Roberts J.D., Zakour R.A. Rapid and efficient site-specific mutagenesis without phenotypic selection. Methods Enzymol. 154:1987;367-382
16. Laskowski R.A., MacArthur M.W., Moss D.S., Thornton J.M. Procheck. a program to check the stereochemical quality of protein structures J. Appl. Crystallogr. 26:1993;283-291
17. Lowman H.B. Combinatorial peptide library protocols. Cabilly S. Methods in Molecular Biology. 1998;249-264 Humana Press, Totowa, NJ
18. Ma B., Elkayam T., Wolfson H., Nussinov R. Protein-protein interactions. structurally conserved residues distinguish between binding sites and exposed protein surfaces Proc. Natl. Acad. Sci. USA. 100:2003;5772-5777
19. McRee D.E. Practical Protein Crystallography. 2nd Edition:1993;Academic Press, San Diego, CA
20. Nakamura G.R., Starovasnik M.A., Reynolds M.E., Lowman H.B. A novel family of hairpin peptides that inhibit IgE activity by binding to the high-affinity IgE receptor. Biochemistry. 40:2001;9828-9835
21. Nakamura G.R., Reynolds M.E., Chen Y.M., Starovasnik M.A., Lowman H.B. Stable "zeta" peptides that act as potent antagonists of the high-affinity IgE receptor. Proc. Natl. Acad. Sci. USA. 99:2002;1303-1308
22. Navaza J. AMoRe. an automated package for molecular replacement Acta Crystallogr. A. 50:1994;157-163
23. Ösapay K., Case D.A. A new analysis of proton chemical shifts in proteins. J. Am. Chem. Soc. 113:1991;9436-9444
24. Owen C.E. Anti-immunoglobulin E therapy for asthma. Pulm. Pharmacol. Ther. 15:2002;417-424
25. Radaev S., Motyka S., Fridman W.-H., Sautees-Fridman C., Sun P.D. The structure of a human type III Fcγ Receptor in complex with Fc. J. Biol. Chem. 276:2001;16469-16477
26. Read R.J. Improved Fourier coefficients for maps using phases from partial structures with errors. Acta Crystallogr. A. 42:1986;140-149
27. Reilly D., Fairbrother W.J. A novel isotope labeling protocol for bacterially expressed proteins. J. Biomol. NMR. 4:1994;459-462
28. Sidhu S.S., Lowman H.B., Cunningham B.C., Wells J.A. Phage display for selection of novel binding peptides. Methods Enzymol. 328:2000;333-363
29. Sondermann P., Oosthuizen V. Mediation and modulation of antibody function. Biochem. Soc. Trans. 30:2002;481-486
30. Sondermann P., Huber R., Oosthuizen V., Jacob U. The 3.2-Å crystal structure of the human IgG1 Fc fragment-FcγRIII complex. Nature. 406:2000;267-273
31. Tong L. REPLACE, a suite of computer programs for molecular-replacement calculations. J. Appl. Crystallogr. 26:1993;748-751
32. 15N chemical shift referencing in biomolecular NMR. J Biomol NMR. 6:1995;135-140
33. Zarrinpar A., Lim W.A. Converging on proline. the mechanism of WW domain peptide recognition Nat. Struct. Biol. 7:2000;611-613
34. Zwahlen C., Sébastien P.L., Vincent J.F., Greenblatt J., Konrat R., Kay L.E. Methods for the measurement of intermolecular NOEs by multinuclear NMR spectroscopy. application to a bacteriophage N-peptide/boxB RNA complex J. Am. Chem. Soc. 119:1997;6711-6721