Genomic and phenotypic comparison of Bacillus fumarioli isolates from geothermal Antarctic soil and gelatine

Research in Microbiology

Volumn 155, Issue 6, 2004, Pages 483-490

  De Clerck, Elke ^a   Gevers, Dirk ^b   Sergeant, Kjell ^b   Rodríguez Díaz, Marina ^c   Herman, Lieve ^d   Logan, Niall A ^c   Van Beeumen, Jozef ^b   De Vos, Paul ^a  

^a GHENT UNIVERSITY   (Belgium)

^b GHENT UNIVERSITY   (Belgium)

^c GLASGOW CALEDONIAN UNIVERSITY   (United Kingdom)

^d Centrum voor Landbouwkundig Onderzoek Gent CLO / Centre de Recherches Agronomiques Gand   (Belgium)

Author keywords

Antarctica; Bacillus fumarioli; Diversity; Gelatine

Indexed keywords

CELL PROTEIN; FATTY ACID; GELATIN;

ANTARCTICA; ARTICLE; DNA HYBRIDIZATION; DNA SEQUENCE; EVOLUTION; GENOME; MORPHOLOGY; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; SOIL; SPECIES DIFFERENCE; STRESS;

ANTARCTIC REGIONS; BACILLUS; EVOLUTION, MOLECULAR; GENOME, BACTERIAL; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY;

BACILLUS FUMARIOLI;

EID: 3142526228     PISSN: 09232508     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.resmic.2004.02.007     Document Type: Article

References (30)

1. Adams H., Teertstra W., Koster M., Tommassen J. PspE (phage-shock protein E) of Escherichia coli is a rhodanese. FEBS Lett. 518:2002;173-176
2. Agron P.G., Walker R.L., Kinde H., Sawyer S.J., Hayes D.C., Wollard J., Andersen G.L. Identification by subtractive hybridization of sequences specific for Salmonella enterica serovar Enteritidis. Appl. Environ. Microbiol. 67:2001;4984-4991
3. Akopyants N.S., Fradkov A., Diatchenko L., Hill J.E., Siebert P.D., Lukyanov S.A., Sverdlov E.D., Berg D.E. PCR-based subtractive hybridization and differences in gene content among strains of Helicobacter pylori. Proc. Nat. Acad. Sci. USA. 95:1998;13108-13113
4. Bargagli R., Broady P.A., Walton D.W.H. Preliminary investigation of the thermal biosystem of Mount Rittmann fumaroles (Northern Victoria Land, Antarctica). Antarctic Sci. 8:1996;121-126
5. Bonaccorso A., Maione M., Pertusati P.C., Privitera E., Ricci C.A. Fumarolic activity at Mount Rittmann volcano (Northern Victoria Land, Antarctica). Mem. Soc. Geol. It. 46:1991;453-456
6. Broady P., Given D., Greenfield L., Thompson K. The biota and environment of fumaroles on Mt. Melbourne, Northern Victoria Land. Polar. Biol. 7:1987;97-113
7. Broady P.A. Soils heated by volcanism. Friedman E.I. Antarctic Microbiology. 1993;413-432 Wiley-Liss, New York
8. De Clerck E., De Vos P. Study of the bacterial load in a gelatine production process, focussed on Bacillus and related endosporeforming genera. Syst. Appl. Microbiol. 25:2002;611-618
9. E. De Clerck, T. Vanhoutte, T. Hebb, J. Geerinck, J. Devos, P. De Vos, Isolation, characterisation and identification of bacterial contaminants in semi-final gelatine extracts, Appl. Environ. Microbiol., in press
10. E. De Clerck, M. Rodriguez-Diaz, T. Vanhoutte, J. Heyrman, N.A. Logan, P. De Vos, Anoxybacillus contaminans sp. nov. and Bacillus gelatini sp. nov., isolated from contaminated gelatine batches, Int. J. Syst. Evol. Microbiol., in press
11. Devreese B., Vanrobaeys F., Van Beeumen J. Automated nanoflow liquid chromatography/tandem mass spectrometric identification of proteins from Shewanella putrefaciens separated by two-dimensional polyacrylamide gel electrophoresis. Rapid Commun. Mass Spectrom. 15:2001;50-56
12. Ezaki T., Hashimoto Y., Yabuuchi E. Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int. J. Syst. Bacteriol. 39:1989;224-229
13. Gish W., States D.J. Identification of protein coding regions by database similarity search. Nat. Genet. 3:1993;266-272
14. Herman L.M.F., Vaerewijck M.J.M., Moermans R.J.B., Waes G.M.A.V.J. Identification and detection of Bacillus sporothermodurans spores in 1, 10, and 100 milliliters of raw milk by PCR. Appl. Environ. Microbiol. 63. 1997;3139-3143
15. Heyndrickx M., Vauterin L., Vandamme P., Kersters K., De Vos P. Applicability of combined amplified ribosomal DNA restriction analysis (ARDRA) patterns in bacterial phylogeny and taxonomy. J. Microbiol. Meth. 26:1996;247-259
16. Heyrman J., Swings J. 16S rDNA sequence analysis of bacterial isolates from biodeteriorated murals paintings in the Servilia tomb (necropolis of Carmona, Seville, Spain). Syst. Appl. Microbiol. 24:2001;417-422
17. Jeno P., Mini T., Moes S., Hintermann E., Horst M. Internal sequences from proteins digested in polyacrylamide gels. Anal. Biochem. 224:1995;75-82
18. Logan N.A., Lebbe L., Hoste B., Goris J., Forsyth G., Heyndrickx M., Murray B.L., Syme N., Wynn-Williams D.D., De Vos P. Aerobic endospore forming bacteria from geothermal environments in Northern Victoria Land, Antarctica, and Candlemas Island, South Sandwich Archipelago, with the proposal of Bacillus fumarioli sp. nov. Int. J. Syst. Evol. Microbiol. 50:2000;1741-1753
19. N.A. Logan, E. De Clerck, L. Lebbe, A. Verhelst, J. Goris, G. Forsyth, M. Rodriguez-Diaz, M. Heyndrickx, P. De Vos, Paenibacillus cineris sp. nov. and Paenibacillus cookii sp. nov. from Antarctic volcanic soils and a gelatine processing plant. Int. J. Syst. Evol. Microbiol., in press
20. Mackey A.J., Haystead T.A., Pearson W.R. Getting more from less: Algorithms for rapid protein identification with multiple short peptide sequences. Mol. Cell Proteom. 1:2002;139-147
21. Pearson W.R., Lipman D.J. Improved tools for biological sequence comparison. Proc. Nat. Acad. Sci. USA. 85:1988;2444-2448
22. Pitcher D.G., Saunders N.A., Owen R.J. Rapid extraction of bacterial genomic DNA with guanidium thiocyanate. Lett. Appl. Microbiol. 8:1989;151-156
23. Pot B., Vandamme P., Kersters K. Analysis of electrophoretic whole-organism protein fingerprints. Goodfellow M., O'Donnell A.G. Chemical Methods in Prokaryotic Systematics. 1994;493-521 Wiley, Chichester
24. Radnedge L., Agron P.G., Hill K.K., Jackson P.J., Ticknor L.O., Keim P., Andersen G.L. Genome differences that distinguish Bacillus anthracis from Bacillus cereus and Bacillus thuringiensis. Appl. Environ. Microbiol. 69:2003;2755-2764
25. Sambrook J., Fritsch E.F., Maniatis T. Molecular Cloning: A Laboratory Manual. 1989;Cold Spring Harbor Laboratory Press, New York
26. Stackebrandt E., Frederiksen W., Garrity G.M., Grimont P.A.D., Kämpfer P., Maiden M.C.J., Nesme X., Rossello-Mora R., Swings J., Trüper H.G., Vauterin L., Ward A.C., Whitman W.B. Report of the ad hoc committee for the reevaluation of the species definition in bacteriology. Int. J. Syst. Evol. Microbiol. 52:2002;1043-1047
27. Versalovic J., Schneider M., De Bruijn F.J., Lupski J.R. Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction. Meth. Mol. Cell. Biol. 5:1994;25-40
28. Weiner L., Model P. Role of an Escherichia coli stress-response operon in stationary-phase survival. Proc. Natl. Acad. Sci. USA. 91:1994;2191-2195
29. Willems A., Doignon-Bourcier F., Goris J., Coopman R., De Lajudie P., De Vos P., Gillis M. DNA-DNA hybridization study of Bradyrhizobium strains. Int. J. Syst. Evol. Microbiol. 51:2001;1315-1322
30. Yang P., Vauterin L., Vancanneyt M., Swings J., Kersters K. Application of fatty acid methyl esters for the taxonomic analysis of the genus Xanthomonas. Syst. Appl. Microbiol. 16:1993;47-71