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Volumn 186, Issue 14, 2004, Pages 4575-4584

Mu-like prophage strong gyrase site sequences: Analysis of properties required for promoting efficient Mu DNA replication

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIOPHAGE MU; CYTOLYSIS; DNA REPLICATION; ESCHERICHIA COLI; HAEMOPHILUS INFLUENZAE; MOLECULAR CLONING; NEISSERIA MENINGITIDIS; NONHUMAN; PLASMID; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROPHAGE; REPORTER GENE; SALMONELLA ENTERICA; SALMONELLA TYPHI;

EID: 3142516478     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.186.14.4575-4584.2004     Document Type: Article
Times cited : (4)

References (36)
  • 1
    • 0037059610 scopus 로고    scopus 로고
    • Phage genomics: Small is beautiful
    • Brussow, H., and R. W. Hendrix. 2002. Phage genomics: small is beautiful. Cell 108:13-16.
    • (2002) Cell , vol.108 , pp. 13-16
    • Brussow, H.1    Hendrix, R.W.2
  • 2
    • 0037825641 scopus 로고    scopus 로고
    • Prophages and bacterial genomics: What have we learned so far?
    • Casjens, S. 2003. Prophages and bacterial genomics: what have we learned so far? Mol. Microbiol. 49:277-300.
    • (2003) Mol. Microbiol. , vol.49 , pp. 277-300
    • Casjens, S.1
  • 3
    • 85158020392 scopus 로고    scopus 로고
    • Transcription of phage Mu DNA
    • R. Craigie (ed.). ASM Press, Washington, D.C.
    • Chaconas, G., and R. M. Harshey. 2002. Transcription of phage Mu DNA, p. 384-402. In R. Craigie (ed.), Mobile DNA II. ASM Press, Washington, D.C.
    • (2002) Mobile DNA II , pp. 384-402
    • Chaconas, G.1    Harshey, R.M.2
  • 4
    • 0030698083 scopus 로고    scopus 로고
    • In vivo cleavage of Escherichia coli BIME-2 repeats by DNA gyrase: Genetic characterization of the target and identification of the cut site
    • Espeli, O., and F. Boccard. 1997. In vivo cleavage of Escherichia coli BIME-2 repeats by DNA gyrase: genetic characterization of the target and identification of the cut site. Mol. Microbiol. 26:767-777.
    • (1997) Mol. Microbiol. , vol.26 , pp. 767-777
    • Espeli, O.1    Boccard, F.2
  • 7
    • 0001373485 scopus 로고
    • Nalidixic acid resistance: A second genetic character involved in DNA gyrase activity
    • Gellert, M., K. Mizuuchi, M. H. O'Dea, T. Itoh, and J. I. Tomizawa. 1977. Nalidixic acid resistance: a second genetic character involved in DNA gyrase activity. Proc. Natl. Acad. Sci. USA 74:4772-4776.
    • (1977) Proc. Natl. Acad. Sci. USA , vol.74 , pp. 4772-4776
    • Gellert, M.1    Mizuuchi, K.2    O'Dea, M.H.3    Itoh, T.4    Tomizawa, J.I.5
  • 9
    • 0033514996 scopus 로고    scopus 로고
    • Evolutionary relationships among diverse bacteriophages and prophages: All the world's a phage
    • Hendrix, R. W., M. C. Smith, R. N. Burns, M. E. Ford, and G. F. Hatfull. 1999. Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage. Proc. Natl. Acad. Sci. USA 96:2192-2197.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 2192-2197
    • Hendrix, R.W.1    Smith, M.C.2    Burns, R.N.3    Ford, M.E.4    Hatfull, G.F.5
  • 10
    • 0033587704 scopus 로고    scopus 로고
    • A model for the mechanism of strand passage by DNA gyrase
    • Kampranis, S. C., A. D. Bates, and A. Maxwell. 1999. A model for the mechanism of strand passage by DNA gyrase. Proc. Natl. Acad. Sci. USA 96:8414-8419.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 8414-8419
    • Kampranis, S.C.1    Bates, A.D.2    Maxwell, A.3
  • 11
    • 0034062859 scopus 로고    scopus 로고
    • Molecular and biological analysis of eight genetic islands that distinguish Neisseria meningitidis from the closely related pathogen Neisseria gonorrhoeae
    • Klee, S. R., X. Nassif, B. Kusecek, P. Merker, J. L. Beretti, M. Achtman, and C. R. Tinsley. 2000. Molecular and biological analysis of eight genetic islands that distinguish Neisseria meningitidis from the closely related pathogen Neisseria gonorrhoeae. Infect. Immun. 68:2082-2095.
    • (2000) Infect. Immun. , vol.68 , pp. 2082-2095
    • Klee, S.R.1    Nassif, X.2    Kusecek, B.3    Merker, P.4    Beretti, J.L.5    Achtman, M.6    Tinsley, C.R.7
  • 12
    • 0022361531 scopus 로고
    • Sites of reaction of Escherichia coli DNA gyrase on pBR322 in vivo as revealed by oxolinic acid-induced plasmid linearization
    • Lockshon, D., and D. R. Morris. 1985. Sites of reaction of Escherichia coli DNA gyrase on pBR322 in vivo as revealed by oxolinic acid-induced plasmid linearization. J. Mol. Biol. 181:63-74.
    • (1985) J. Mol. Biol. , vol.181 , pp. 63-74
    • Lockshon, D.1    Morris, D.R.2
  • 15
    • 4444363101 scopus 로고    scopus 로고
    • Overexpression and purification of bacterial DNA gyrase
    • M. A. Bjornsti and N. Osheroff (ed.). Humana Press, Totowa, N.J.
    • Maxwell, A., and A. J. Howells. 1999. Overexpression and purification of bacterial DNA gyrase, p. 135-144. In M. A. Bjornsti and N. Osheroff (ed.), DNA topoisomerase protocols, vol. 1. DNA topology and enzymes, vol. 94. Humana Press, Totowa, N.J.
    • (1999) DNA Topoisomerase Protocols, Vol. 1. DNA Topology and Enzymes , vol.94 , pp. 135-144
    • Maxwell, A.1    Howells, A.J.2
  • 16
    • 0036299014 scopus 로고    scopus 로고
    • Bacteriophage Mu genome sequence: Analysis and comparison with Mu-like prophages in Haemophilus, Neisseria and Deinococcus
    • Morgan, G. J., G. F. Hatfull, S. Casjens, and R. W. Hendrix. 2002. Bacteriophage Mu genome sequence: analysis and comparison with Mu-like prophages in Haemophilus, Neisseria and Deinococcus. J. Mol. Biol. 317:337-359.
    • (2002) J. Mol. Biol. , vol.317 , pp. 337-359
    • Morgan, G.J.1    Hatfull, G.F.2    Casjens, S.3    Hendrix, R.W.4
  • 17
    • 0018422012 scopus 로고
    • Site-specific cleavage of DNA by E. coli DNA gyrase
    • Morrison, A., and N. R. Cozzarelli. 1979. Site-specific cleavage of DNA by E. coli DNA gyrase. Cell 17:175-184.
    • (1979) Cell , vol.17 , pp. 175-184
    • Morrison, A.1    Cozzarelli, N.R.2
  • 18
    • 0019320808 scopus 로고
    • Interaction between DNA gyrase and its cleavage site on DNA
    • Morrison, A., N. P. Higgins, and N. R. Cozzarelli. 1980. Interaction between DNA gyrase and its cleavage site on DNA. J. Biol. Chem. 255:2211-2219.
    • (1980) J. Biol. Chem. , vol.255 , pp. 2211-2219
    • Morrison, A.1    Higgins, N.P.2    Cozzarelli, N.R.3
  • 19
    • 0022429185 scopus 로고
    • Mapping of DNA gyrase cleavage sites in vivo: Oxolinic acid induced cleavages in plasmid pBR322
    • O'Connor, M. B., and M. H. Malamy. 1985. Mapping of DNA gyrase cleavage sites in vivo: oxolinic acid induced cleavages in plasmid pBR322. J. Mol. Biol. 181:545-550.
    • (1985) J. Mol. Biol. , vol.181 , pp. 545-550
    • O'Connor, M.B.1    Malamy, M.H.2
  • 20
    • 0141818904 scopus 로고    scopus 로고
    • A biochemical analysis of the interaction of DNA gyrase with the bacteriophage Mu, pSC101 and pBR322 strong gyrase sites: The role of DNA sequence in modulating gyrase supercoiling and biological activity
    • Oram, M., A. J. Howells, A. Maxwell, and M. L. Pato. 2003. A biochemical analysis of the interaction of DNA gyrase with the bacteriophage Mu, pSC101 and pBR322 strong gyrase sites: the role of DNA sequence in modulating gyrase supercoiling and biological activity. Mol. Microbiol. 50:333-347.
    • (2003) Mol. Microbiol. , vol.50 , pp. 333-347
    • Oram, M.1    Howells, A.J.2    Maxwell, A.3    Pato, M.L.4
  • 21
    • 0028233250 scopus 로고
    • Evidence for a conformational change in the DNA gyrase-DNA complex from hydroxyl radical footprinting
    • Orphanides, G., and A. Maxwell. 1994. Evidence for a conformational change in the DNA gyrase-DNA complex from hydroxyl radical footprinting. Nucleic Acids Res. 22:1567-1575.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 1567-1575
    • Orphanides, G.1    Maxwell, A.2
  • 24
    • 0037123778 scopus 로고    scopus 로고
    • Path of DNA within the Mu transpososome: Transposase interactions bridging two Mu ends and the enhancer trap five DNA supercoils
    • Pathania, S., M. Jayaram, and R. M. Harshey. 2002. Path of DNA within the Mu transpososome: transposase interactions bridging two Mu ends and the enhancer trap five DNA supercoils. Cell 109:425-436.
    • (2002) Cell , vol.109 , pp. 425-436
    • Pathania, S.1    Jayaram, M.2    Harshey, R.M.3
  • 25
    • 0001798652 scopus 로고
    • Bacteriophage Mu
    • D. Berg and M. M. Howe (ed.). American Society for Microbiology, Washington, D.C.
    • Pato, M. L. 1989. Bacteriophage Mu, p. 23-52. In D. Berg and M. M. Howe (ed.), Mobile DNA. American Society for Microbiology, Washington, D.C.
    • (1989) Mobile DNA , pp. 23-52
    • Pato, M.L.1
  • 26
    • 0033858188 scopus 로고    scopus 로고
    • Genetic analysis of the strong gyrase site (SGS) of bacteriophage Mu: Localization of determinants required for promoting Mu replication
    • Pato, M. L., and M. Banerjee. 2000. Genetic analysis of the strong gyrase site (SGS) of bacteriophage Mu: localization of determinants required for promoting Mu replication. Mol. Microbiol. 37:800-810.
    • (2000) Mol. Microbiol. , vol.37 , pp. 800-810
    • Pato, M.L.1    Banerjee, M.2
  • 27
    • 0029827620 scopus 로고    scopus 로고
    • The Mu strong gyrase-binding site promotes efficient synapsis of the prophage termini
    • Pato, M. L., and M. Banerjee. 1996. The Mu strong gyrase-binding site promotes efficient synapsis of the prophage termini. Mol. Microbiol. 22:283-292.
    • (1996) Mol. Microbiol. , vol.22 , pp. 283-292
    • Pato, M.L.1    Banerjee, M.2
  • 28
    • 0032881215 scopus 로고    scopus 로고
    • Replacement of the bacteriophage Mu strong gyrase site and effect on Mu DNA replication
    • Pato, M. L., and M. Banerjee. 1999. Replacement of the bacteriophage Mu strong gyrase site and effect on Mu DNA replication. J. Bacteriol. 181:5783-5789.
    • (1999) J. Bacteriol. , vol.181 , pp. 5783-5789
    • Pato, M.L.1    Banerjee, M.2
  • 29
    • 0025517653 scopus 로고
    • A DNA gyrase-binding site at the center of the bacteriophage Mu genome is required for efficient replicative transposition
    • Pato, M. L., M. M. Howe, and N. P. Higgins. 1990. A DNA gyrase-binding site at the center of the bacteriophage Mu genome is required for efficient replicative transposition. Proc. Natl. Acad. Sci. USA 87:8716-8720.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 8716-8720
    • Pato, M.L.1    Howe, M.M.2    Higgins, N.P.3
  • 30
    • 0022181017 scopus 로고
    • DNA topoisomerase I mutants. Increased heterogeneity in linking number and other replicon-dependent changes in DNA supercoiling
    • Pruss, G. J. 1985. DNA topoisomerase I mutants. Increased heterogeneity in linking number and other replicon-dependent changes in DNA supercoiling. J. Mol. Biol. 185:51-63.
    • (1985) J. Mol. Biol. , vol.185 , pp. 51-63
    • Pruss, G.J.1
  • 31
    • 0024398661 scopus 로고
    • Tryptic fragments of the Escherichia coli DNA gyrase A protein
    • Reece, R. J., and A. Maxwell. 1989. Tryptic fragments of the Escherichia coli DNA gyrase A protein. J. Biol. Chem. 264:19648-19653.
    • (1989) J. Biol. Chem. , vol.264 , pp. 19648-19653
    • Reece, R.J.1    Maxwell, A.2
  • 32
    • 0030808667 scopus 로고    scopus 로고
    • The DNA cleavage reaction of DNA gyrase. Comparison of stable ternary complexes formed with enoxacin and CcdB protein
    • Scheirer, K. E., and N. P. Higgins. 1997. The DNA cleavage reaction of DNA gyrase. Comparison of stable ternary complexes formed with enoxacin and CcdB protein. J. Biol. Chem. 272:27202-27209.
    • (1997) J. Biol. Chem. , vol.272 , pp. 27202-27209
    • Scheirer, K.E.1    Higgins, N.P.2
  • 33
    • 0037243599 scopus 로고    scopus 로고
    • DNA gyrase requirements distinguish the alternate pathways of Mu transposition
    • Sokolsky, T. D., and T. A. Baker. 2003. DNA gyrase requirements distinguish the alternate pathways of Mu transposition. Mol. Microbiol. 47:397-409.
    • (2003) Mol. Microbiol. , vol.47 , pp. 397-409
    • Sokolsky, T.D.1    Baker, T.A.2
  • 34
    • 0001534829 scopus 로고
    • Mechanism of action of nalidixic acid: Purification of Escherichia coli nalA gene product and its relationship to DNA gyrase and a novel nicking-closing enzyme
    • Sugino, A., C. L. Peebles, K. N. Kreuzer, and N. R. Cozzarelli. 1977. Mechanism of action of nalidixic acid: purification of Escherichia coli nalA gene product and its relationship to DNA gyrase and a novel nicking-closing enzyme. Proc. Natl. Acad. Sci. USA 74:4767-4771.
    • (1977) Proc. Natl. Acad. Sci. USA , vol.74 , pp. 4767-4771
    • Sugino, A.1    Peebles, C.L.2    Kreuzer, K.N.3    Cozzarelli, N.R.4
  • 36
    • 0024022068 scopus 로고
    • The partition locus of plasmid pSC101 is a specific binding site for DNA gyrase
    • Wahle, E., and A. Kornberg. 1988. The partition locus of plasmid pSC101 is a specific binding site for DNA gyrase. EMBO J. 7:1889-1895.
    • (1988) EMBO J. , vol.7 , pp. 1889-1895
    • Wahle, E.1    Kornberg, A.2


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