-
1
-
-
9144242657
-
Comprehensive analysis of the base composition around the transcription start site in Metazoa
-
S. Aerts, G. Thijs, M. Dabrowski, Y. Moreau, and B.D. Moor Comprehensive analysis of the base composition around the transcription start site in Metazoa BMC Genomics 5 2004 34
-
(2004)
BMC Genomics
, vol.5
, pp. 34
-
-
Aerts, S.1
Thijs, G.2
Dabrowski, M.3
Moreau, Y.4
Moor, B.D.5
-
2
-
-
25444524842
-
PSSM-based prediction of DNA binding sites in proteins
-
S. Ahmad, and A. Sarai PSSM-based prediction of DNA binding sites in proteins BMC Bioinformatics 6 2005 33
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 33
-
-
Ahmad, S.1
Sarai, A.2
-
3
-
-
0025878149
-
Amino acid substitution matrices from an information theoretic perspective
-
S.F. Altschul Amino acid substitution matrices from an information theoretic perspective J. Mol. Biol. 219 1991 555 565
-
(1991)
J. Mol. Biol.
, vol.219
, pp. 555-565
-
-
Altschul, S.F.1
-
4
-
-
0027516090
-
A protein alignment scoring system sensitive at all evolutionary distances
-
S.F. Altschul A protein alignment scoring system sensitive at all evolutionary distances J. Mol. Evol. 36 1993 290 300
-
(1993)
J. Mol. Evol.
, vol.36
, pp. 290-300
-
-
Altschul, S.F.1
-
5
-
-
19544383635
-
Identification and measurement of neighbor-dependent nucleotide substitution process
-
P. Arndt, and T. Hwa Identification and measurement of neighbor-dependent nucleotide substitution process Bioinformatics 21 2005 2322 2328
-
(2005)
Bioinformatics
, vol.21
, pp. 2322-2328
-
-
Arndt, P.1
Hwa, T.2
-
6
-
-
0037352074
-
Computer model for recognition of functional transcription start sites in RNA Polymerase II promoters of vertebrates
-
V.B. Bajic, S.H. Seah, A. Chong, S.P.T. Krishnan, J.L.T. Koh, and V. Brusic Computer model for recognition of functional transcription start sites in RNA Polymerase II promoters of vertebrates J. Mol. Graph. 21 2002 323 332
-
(2002)
J. Mol. Graph.
, vol.21
, pp. 323-332
-
-
Bajic, V.B.1
Seah, S.H.2
Chong, A.3
Krishnan, S.P.T.4
Koh, J.L.T.5
Brusic, V.6
-
7
-
-
8444235368
-
Content analysis of the core promoter region of human genes
-
V.B. Bajic, V. Choudhary, and C.K. Hock Content analysis of the core promoter region of human genes In Silico Biol. 4 2003 0011
-
(2003)
In Silico Biol.
, vol.4
, pp. 0011
-
-
Bajic, V.B.1
Choudhary, V.2
Hock, C.K.3
-
8
-
-
0025278259
-
Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences
-
P. Bucher Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences J. Mol. Biol. 212 1990 563 578
-
(1990)
J. Mol. Biol.
, vol.212
, pp. 563-578
-
-
Bucher, P.1
-
10
-
-
0036123111
-
Computational detection and location of transcription start sites in mammalian genomic DNA
-
T.A. Down, and T.J.P. Hubbard Computational detection and location of transcription start sites in mammalian genomic DNA Genome Res. 12 2002 458 461
-
(2002)
Genome Res.
, vol.12
, pp. 458-461
-
-
Down, T.A.1
Hubbard, T.J.P.2
-
11
-
-
0026458378
-
Amino acid substitution matrices from protein blocks
-
S. Henikoff, and J.G. Henikoff Amino acid substitution matrices from protein blocks Proc. Natl. Acad. Sci. U.S.A. 89 1992 10915 10919
-
(1992)
Proc. Natl. Acad. Sci. U.S.A.
, vol.89
, pp. 10915-10919
-
-
Henikoff, S.1
Henikoff, J.G.2
-
12
-
-
0035171017
-
PromEC: An updated database of Escherichia coli mRNA promoters with experimentally identified transcriptional start sites
-
R. Hershberg, G. Bejerano, A. Santos-Zavaleta, and H. Margalit PromEC: an updated database of Escherichia coli mRNA promoters with experimentally identified transcriptional start sites Nucleic Acids Res. 29 2001 277
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 277
-
-
Hershberg, R.1
Bejerano, G.2
Santos-Zavaleta, A.3
Margalit, H.4
-
13
-
-
0025259313
-
Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
-
S. Karlin, and S.F. Altschul Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes Proc. Natl. Acad. Sci. U.S.A. 87 1990 2264 2268
-
(1990)
Proc. Natl. Acad. Sci. U.S.A.
, vol.87
, pp. 2264-2268
-
-
Karlin, S.1
Altschul, S.F.2
-
14
-
-
13244276706
-
A nucleotide substitution model with nearest-neighbor interactions
-
G. Lunter, and J. Hein A nucleotide substitution model with nearest-neighbor interactions Bioinformatics 20 2004 i216 i223
-
(2004)
Bioinformatics
, vol.20
-
-
Lunter, G.1
Hein, J.2
-
15
-
-
0036911605
-
Distribution and characterization of regulatory elements in the human genome
-
J. Majewski, and J. Ott Distribution and characterization of regulatory elements in the human genome Genome Res. 12 2002 1827 1836
-
(2002)
Genome Res.
, vol.12
, pp. 1827-1836
-
-
Majewski, J.1
Ott, J.2
-
17
-
-
0036145804
-
A comparison of position-specific score matrices based on sequence and structure alignments
-
A.R. Panchenko, and S.H. Bryant A comparison of position-specific score matrices based on sequence and structure alignments Protein Sci. 11 2002 361 370
-
(2002)
Protein Sci.
, vol.11
, pp. 361-370
-
-
Panchenko, A.R.1
Bryant, S.H.2
-
20
-
-
0037246944
-
PlantProm: A database of plant promoter sequences
-
I.A. Shahmuradov, A.J. Gammerman, J.M. Hancock, P.M. Bramley, and V.V. Solovyev PlantProm: a database of plant promoter sequences Nucleic Acids Res. 31 2003 114 117
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 114-117
-
-
Shahmuradov, I.A.1
Gammerman, A.J.2
Hancock, J.M.3
Bramley, P.M.4
Solovyev, V.V.5
-
21
-
-
0043269205
-
The RNA polymerase II core promoter
-
S.T. Smale, and J.T. Kadonaga The RNA polymerase II core promoter Ann. Rev. Biochem. 72 2003 449 479
-
(2003)
Ann. Rev. Biochem.
, vol.72
, pp. 449-479
-
-
Smale, S.T.1
Kadonaga, J.T.2
-
22
-
-
16344388556
-
The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositions
-
Y.-K. Yu, and S.F. Altschul The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositions Bioinformatics 21 2005 902 911
-
(2005)
Bioinformatics
, vol.21
, pp. 902-911
-
-
Yu, Y.-K.1
Altschul, S.F.2
-
23
-
-
0346734129
-
The compositional adjustment of amino acid substitution matrices
-
Y.-K. Yu, J.C. Wootton, and S.F. Altschul The compositional adjustment of amino acid substitution matrices Proc. Natl. Acad. Sci. U.S.A. 100 2003 15688 15693
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 15688-15693
-
-
Yu, Y.-K.1
Wootton, J.C.2
Altschul, S.F.3
-
24
-
-
16344382055
-
Relation between weight matrix and substitution matrix: Motif search by similarity
-
W.-M. Zheng Relation between weight matrix and substitution matrix: motif search by similarity Bioinformatics 21 2005 938 943
-
(2005)
Bioinformatics
, vol.21
, pp. 938-943
-
-
Zheng, W.-M.1
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