Simultaneous identification of orthopoxviruses and alphaviruses by oligonucleotide macroarray with special emphasis on detection of variola and Venezuelan equine encephalitis viruses

Journal of Virological Methods

Volumn 131, Issue 2, 2006, Pages 160-167

  Fitzgibbon, Joseph E ^a   Sagripanti, Jose Luis ^a  

^a EDGEWOOD CHEMICAL BIOLOGICAL CENTER   (United States)

Author keywords

Detection; Diagnosis; Smallpox; Variola; Venezuelan equine encephalitis

Indexed keywords

DIGOXIGENIN; VIRUS DNA;

ALPHA VIRUS; AMPLICON; ARTICLE; DNA MICROARRAY; GENE AMPLIFICATION; GENE SEQUENCE; NONHUMAN; NUCLEIC ACID HYBRIDIZATION; NUCLEOTIDE BINDING SITE; ORTHOPOXVIRUS; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; SMALLPOX VIRUS; VENEZUELAN EQUINE ENCEPHALOMYELITIS ALPHAVIRUS; VIRUS DETECTION; VIRUS IDENTIFICATION; VIRUS STRAIN;

ALPHAVIRUS; DIGOXIGENIN; DNA, VIRAL; ENCEPHALITIS VIRUS, VENEZUELAN EQUINE; NUCLEIC ACID HYBRIDIZATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; ORTHOPOXVIRUS; POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; STAINING AND LABELING; VARIOLA VIRUS;

ALPHAVIRUS; DNA VIRUSES; EQUIDAE; ORTHOPOXVIRUS; VARIOLA; VARIOLA VIRUS; VENEZUELAN EQUINE ENCEPHALITIS VIRUS;

EID: 30644475694     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2005.08.007     Document Type: Article

References (25)

1. G. Brightwell, J.M. Brown, and D.M. Coates Genetic targets for the detection and amplification of Venezuelan equine encephalitis viruses Arch. Virol. 143 1998 731 742
2. J.J. Esposito, and J.C. Knight Orthopoxvirus DNA: a comparison of restriction profiles and maps Virology 143 1 1985 230 251
3. M.J. Espy, F.R. Cockerill III, R.F. Meyer, M.D. Bowen, G.A. Poland, T.L. Hadfield, and T.F. Smith Detection of smallpox virus DNA by light cycler PCR J. Clin. Microbiol. 40 2002 1985 1988
4. F. Fenner The eradication of smallpox Prog. Med. Virol. 23 1977 1 21
5. D.A. Henderson The history of smallpox eradication Henry E. Sigerist Suppl. Bull. Hist. Med. 4 1980 99 114
6. D.A. Henderson Countering the posteradication threat of smallpox and poli Clin. Infect. Dis. 34 1 2002 79 83
7. M.S. Ibrahim, J.J. Esposito, P.B. Jahrling, and R.S. Lofts The potential of 5′ nuclease PCR for detecting a single-base polymorphism in orthopoxvirus Mol. Cell Probes 11 2 1997 143 147
8. M.S. Ibrahim, D.A. Kulesh, S.S. Saleh, I.K. Damon, J.J. Esposito, A.L. Schmaljohn, and P. Jahrling Real-time PCR assay to detect smallpox virus J. Clin. Microbiol. 41 8 2003 3835 3839
9. D.M. Knipe P.M. Howley Fields Virology fourth ed. 2001 Lippincott Williams and Wilkins Philadelphia
10. D.A. Kulesh, R.O. Baker, B.M. Loveless, D. Norwood, S.H. Zwiers, E. Mucker, C. Hartmann, R. Herrera, D. Miller, D. Christensen, L.P. Wasieloski, J. Huggins, and P.B. Jahrling Smallpox and pan-orthopox virus detection by real-time 3′-minor groove binder TaqMan assays on the Roche LightCycler and the Cepheid Smart Cycler platforms J. Clin. Microbiol. 42 2 2004 601 609
11. M. Laassri, V. Chizhikov, M. Mikheev, Schelkunov, and K. Chumakov Detection and discrimination of orthopoxviruses using microarrays of immobilized oligonucleotides J. Virol. Methods 112 2003 67 78
12. A.J. Lambert, D.A. Martin, and R.S. Lanciotti Detection of North American eastern and western equine encephalitis viruses by nuclei acid amplification assays J. Clin. Microbiol. 41 1 2003 379 385
13. S. Lapa, M. Mikheev, S. Shchelkunov, V. Mikhailovich, A. Sobolev, V. Blinov, I. Babkin, A. Guskov, E. Sokunova, A. Zasedatelev, L. Sandakhchiev, and A. Mitzabekov Species-level identification of orthopoxviruses with an oligonucleotide microchip J. Clin. Microbiol. 40 3 2002 753 757
14. V.N. Loparev, R.F. Massung, J.J. Esposito, and H. Meyer Detection and differentiation of old world orthopoxviruses: restriction fragment polymorphism of the crmB gene region J. Clin. Microbiol. 39 1 2001 94 100
15. T. Maniatis, E.F. Fritsch, and J. Sambrook Molecular Cloning. A Laboratory Manual first ed. 1982 Cold Spring Harbor Laboratory NY
16. S.S. Marennikova, F.G. Nagieva, G.R. Matsevich, E.M. Shelikhina, A.A. Khabakhpasheva, and G.M. Platonova Monoclonal antibodies to monkey pox virus: preparation and application Acta Virol. 32 1 1988 19 26
17. R.F. Massung, L.I. Liu, J. Qi, J.C. Knight, T.E. Yuran, A.R. Kerlavage, J.M. Parsons, J.C. Venter, and J.J. Esposito Analysis of the complete genome of smallpox variola major virus strain Banglasesh-1975 Virology 201 1994 215 240
18. H. Meyer, M. Pfeffer, and H.J. Rziha Sequence alterations within and downstream of the A-type inclusion protein genes allow differentiation of orthopoxvirus species by polymerase chain reaction J. Gen. Virol. 75 1994 1975 1981
19. V.B. Mukinda, G. Mwema, M. Kilundu, D.L. Heymann, A.S. Khan, and J.J. Esposito Re-emergence of human monkeypox in Zaire in 1996. Monkeypox epidemiological working group Lancet 349 9063 1997 1449 1450
20. J.F. Obijeski, E.L. Palmer, L.G. Gafford, and C.C. Randall Plyacrylamide gel electrophoresis of fowlpox and vaccinia virus proteins Virology 51 2 1973 512 516
21. M. Pfeffer, B. Proebster, R.M. Kinney, and O.R. Kaaden Genus-specific detection of alphaviruses by a semi-nested reverse transcription-polymerase chain reaction Am. J. Trop. Med. Hyg. 57 1997 709 718
22. J.S. Porterfield Antigenic Characteristics and Classification of Togaviridae. The Togaviruses: Biology, Structure, Replication 1980 Academic Press New York pp. 13-46
23. J.T. Roehrig, and R.A. Bolin Monoclonal antibodies capable of distinguishing epizootic from enzootic varieties of subtype 1 Venezuelan equine encephalitis viruses in a rapid indirect immunofluorescence assay J. Clin. Microbiol. 35 1997 1887 1890
24. Schwarz, T.F., Siegl, G. (Eds.), 1997. Imported Virus Infections. Springer, Wien New York Arch. Virol. Suppl. 11.
25. US Army MR Institute of Infectious Diseases, 1998. In: Eitzen, E., Pavlin, J., Cieslak, T., Christopher, G., Culpepper, R. (Eds.) Medical Management of Biological Casualties Handbook, third ed. Fort Detrick, Maryland.