In vivo targeting of organic calcium sensors via genetically selected peptides

Chemistry and Biology

Volumn 11, Issue 3, 2004, Pages 347-356

  Marks, Kevin M ^a   Rosinov, Michael ^a   Nolan, Garry P ^a  

^a STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CALCIUM; FLUORESCENT DYE; PEPTIDE; PEPTIDE LIBRARY; TEXAS RED; XANTHENE DERIVATIVE;

AMINO ACID SEQUENCE; ARTICLE; BACTERIOPHAGE; BACTERIOPHAGE M13; CHEMISTRY; DIMERIZATION; GENETIC PROCEDURES; GENETICS; INSTRUMENTATION; METABOLISM; METHODOLOGY; MOLECULAR GENETICS; PROTEIN BINDING; SPECTROFLUOROMETRY;

AMINO ACID SEQUENCE; BACTERIOPHAGE M13; BACTERIOPHAGES; BIOSENSING TECHNIQUES; CALCIUM; DIMERIZATION; FLUORESCENT DYES; MOLECULAR SEQUENCE DATA; PEPTIDE LIBRARY; PEPTIDES; PROTEIN BINDING; SPECTROMETRY, FLUORESCENCE; XANTHENES;

EID: 3042826388     PISSN: 10745521     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.chembiol.2004.03.004     Document Type: Article

References (36)

1. Schlossmann J., Feil R., Hofmann F. Signaling through NO and cGMP-dependent protein kinases. Ann. Med. 35:2003;21-27.
2. Zaccolo M., Magalhaes P., Pozzan T. Compartmentalisation of cAMP and Ca(2+) signals. Curr. Opin. Cell Biol. 14:2002;160-166.
3. Li Y., Hough C.J., Suh S.W., Sarvey J.M., Fredrickson C.J. Rapid translocation of Zn(2+) from presynaptic terminals into postsynaptic hippocampal neurons after physiological stimulation. J. Neurophysiol. 86:2001;2597-2604.
4. Hunter T. Signaling - 2000 and beyond. Cell. 100:2000;113-127.
5. Dolmetsch R.E., Lewis R.S., Goodnow C.C., Healy J.I. Differential activation of transcription factors induced by Ca2+ response amplitude and duration. Nature. 386:1997;855-858.
6. Bers D.M. Dynamic imaging in living cells. windows into local signaling Sci. STKE. 177:2003;PE13.
7. Perez O.D., Nolan G.P. Simultaneous measurement of multiple active kinase states using polychromatic flow cytometry. Nat. Biotechnol. 20:2002;155-162.
8. Tsien R.Y. The green fluorescent protein. Annu. Rev. Biochem. 67:1998;509-544.
9. Miyawaki A., Llopis J., Heim R., McCaffery J.M., Adams J.A., Ikura M., Tsien R.Y. Fluorescent indicators for Ca2+ based on green fluorescent proteins and calmodulin. Nature. 388:1997;882-887.
10. Zhang J., Campbell R.E., Ting A.Y., Tsien R.Y. Creating new fluorescent probes for cell biology. Nat. Rev. Mol. Cell Biol. 3:2002;906-918.
11. Miyawaki A., Griesbeck O., Heim R., Tsien R.Y. Dynamic and quantitative Ca2+ measurements using improved cameleons. Proc. Natl. Acad. Sci. USA. 96:1999;2135-2140.
12. Haugland R. Handbook of Fluorescent Probes and Research Products. 2002;Molecular Probes, Eugene, OR.
13. Haugland R.P. Intracellular ion indicators. Mason W. Fluorescent and Luminescent Probes for Biological Activity. 1999;40-50 Academic Press, San Diego, CA.
14. Griffin B.A., Adams S.R., Jones J., Tsien R.Y. Fluorescent labeling of recombinant proteins in living cells with FlAsH. Methods Enzymol. 327:2000;565-578.
15. Stroffekova K., Proenza C., Beam K.G. The protein-labeling reagent FLASH-EDT2 binds not only to CCXXCC motifs but also non-specifically to endogenous cysteine-rich proteins. Pflugers Arch. 442:2001;859-866.
16. Rozinov M.N., Nolan G.P. Evolution of peptides that modulate the spectral qualities of bound, small-molecule fluorophores. Chem. Biol. 5:1998;713-728.
17. Bodenmuller H., Schilling E., Zachmann B., Schaller H.C. The neuropeptide head activator loses its biological activity by dimerization. EMBO J. 5:1986;1825-1829.
18. Gururaja T.L., Narasimhamurthy S., Payen D.G., Anderson D.C. A novel artificial loop scaffold for the noncovalent constraint of peptides. Chem. Biol. 7:2000;515-527.
19. Barbas C.I., Burton D.R., Scott J.K., Silverman G.J. Phage Display. A Laboratory Manual:2001;Cold Spring Harbor Press, Cold Spring Harbor, NY.
20. McGregor D. Selection of proteins and peptides from libraries displayed on filamentous bacteriophage. Mol. Biotechnol. 6:1996;155-162.
21. Hoogenboom H.R., de Bruine A.P., Hufton S.E., Hoet R.M., Arends J.W., Roovers R.C. Antibody phage display technology and its applications. Immunotechnology. 4:1998;1-20.
22. Ladner R.C. Constrained peptides as binding entities. Trends Biotechnol. 13:1995;426-430.
23. McLafferty M.A., Kent R.B., Ladner R.C., Markland W. M13 bacteriophage displaying disulfide-constrained microproteins. Gene. 128:1993;29-36.
24. Herron J.N., Terry A.H., Johnston S., He X.M., Guddat L.W., Voss E.W. Jr., Edmundson A.B. High resolution structures of the 4-4-20 Fab-fluorescein complex in two solvent systems. effects of solvent on structure and antigen-binding affinity Biophys. J. 67:1994;2167-2183.
25. Vogel K.W., Briesewitz R., Wandless T.J., Crabtree G.R. Calcineurin inhibitors and the generalization of the presenting protein strategy. Adv. Protein Chem. 56:2001;253-291.
26. Weissleder R., Ntziachristos V. Shedding light onto live molecular targets. Nat. Med. 9:2003;123-128.
27. Baird G.S., Zacharias D.A., Tsien R.Y. Biochemistry, mutagenesis, and oligomerization of DsRed, a red fluorescent protein from coral. Proc. Natl. Acad. Sci. USA. 97:2000;11984-11989.
28. Campbell R.E., Tour O., Palmer A.E., Steinbach P.A., Baird G.S., Zacharias D.A., Tsien R.Y. A monomeric red fluorescent protein. Proc. Natl. Acad. Sci. USA. 99:2002;7877-7882.
29. Berridge M.J., Lipp P., Bootman M.D. The versatility and universality of calcium signalling. Nat. Rev. Mol. Cell Biol. 1:2000;11-21.
30. Callewaert G., Eilers J., Konnerth A. Axonal calcium entry during fast 'sodium' action potentials in rat cerebellar Purkinje neurones. J. Physiol. 495:1996;641-647.
31. Konishi M., Hollingworth S., Harkins A.B., Baylor S.M. Myoplasmic calcium transients in intact frog skeletal muscle fibers monitored with the fluorescent indicator furaptra. J. Gen. Physiol. 97:1991;271-301.
32. Parker I., Choi J., Yao Y. Elementary events of InsP3-induced Ca2+ liberation in Xenopus oocytes. hot spots, puffs and blips Cell Calcium. 20:1996;105-121.
33. Dawson A.P., Lea E.J., Irvine R.F. Kinetic model of the inositol trisphosphate receptor that shows both steady-state and quantal patterns of Ca2+ release from intracellular stores. Biochem. J. 370:2003;621-629.
34. Baird G.S., Zacharias D.A., Tsien R.Y. Circular permutation and receptor insertion within green fluorescent proteins. Proc. Natl. Acad. Sci. USA. 96:1999;11241-11246.
35. Nakai J., Ohkura M., Imoto K. A high signal-to-noise Ca(2+) probe composed of a single green fluorescent protein. Nat. Biotechnol. 19:2001;137-141.
36. Titus J.A., Haugland R., Sharrow S.O., Segal D.M. Texas red, a hydrophilic, red-emitting fluorophore for use with fluorescein in dual parameter flow microfluorometric and fluorescence microscopic studies. J. Immunol. Methods. 50:1982;193-204.