Selection of Proteins and Peptides from Libraries Displayed on Filamentous Bacteriophage

Applied Biochemistry and Biotechnology - Part B Molecular Biotechnology

Volumn 6, Issue 2, 1996, Pages 155-162

  McGregor, Duncan ^a  

^a Scotgen Ltd   (United Kingdom)

Author keywords

VH, antibody heavy chain variable sequence region; VL, antibody light chain variable sequence region

Indexed keywords

FILAMENTOUS BACTERIOPHAGE;

PEPTIDE; PEPTIDE LIBRARY; VIRUS PROTEIN;

BACTERIOPHAGE; GENETICS; REVIEW;

BACTERIOPHAGES; PEPTIDE LIBRARY; PEPTIDES; VIRAL PROTEINS;

EID: 0030253986     PISSN: 10736085     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF02740770     Document Type: Review

References (54)

1. Burton, D. R. and Barbas, C. F., III (1994) Human antibodies from combinatorial libraries [Review], in Advances In Immunology vol. 41 (Dixon, F. J., ed.), Academic, Orlando, FL, pp. 191-280.
2. Clackson, T. and Wells, J. A. (1994) In vitro selection from protein and peptide libraries [Review]. TIBTECH 12, 173-183.
3. Gallop, M. A., Barret, R. W., Dower, W. J., Fodor, S. P. A., and Gordon, E. M. (1994) Applications of combinatorial technologies to drug discovery. 1. Background and peptide combinatorial libraries [Review]. J. Medicinal. Chem. 37, 1233-1251.
4. Winter, G., Griffiths, A. D., Hawkins, R. E., and Hoogenboom, H. R. (1994) Making antibodies by phage display technology [Review]. Annu. Rev. Immunol. 433-455.
5. Smith, G. P. (1985) Filamentous fusion phage: novel expression vectors that display cloned antigens on the virion surface. Science 228, 1315-1317.
6. Parmley, S. F. and Smith, G. P. (1988) Antibody selectable filamentous fd phage vectors: affinity purification of target genes. Gene 73, 305-318.
7. Matthews, D. J. and Wells, J. A. (1993) Substrate phage: selection of protease substrates by monovalent phage display. Science 260, 1113-1117.
8. Jellis, C. L., Cradick, T. J., Rennert, P., Salinas, P., Boyd, J., Amirault, T., and Gray, G. S. (1993) Defining critical residues in the epitope for a HIV-neutralizing monoclonal antibody using phage display and peptide array technologies. Gene 137, 63-68.
9. Hoess, R., Brinkmann, U., Handel, T., and Pastan, I. (1993) Identification of a peptide which binds to the carbohydrate-specific monoclonal antibody B3. Gene 128, 43-49.
10. O'Neil, K. T., Hoess, R. H., Jackson, S. A., Ramachandran, N. S., Mousa, S. A., and Degrado, W. F. (1992) Identification of novel peptide antagonists for GPIIb/IIIa from a conformationally constrained phage peptide library. Proteins 14, 509-515.
11. Kay, B. K., Adey, N. B., He, Y. S., Manfredi, J. P., Mataragnon, A. H., and Fowlkes, D. M. (1993) An M13 phage library displaying random 38-amino acid peptides as a source of novel sequences with affinity to selected targets. Gene 128, 59-65.
12. Rickles, R. J., Botfield, M. C., Weng, Z., Taylor, J. A., Green, O. M., Brugge, J. S., and Zoller, M. J. (1994) Identification of Src, Fyn, Lyn, PI3K and Ab1 SH3 domain ligands using phage display libraries. EMBO J. 13, 5598-5604.
13. Doorbar, J. and Winter, G. (1994) Isolation of a peptide antagonist to the thrombin receptor using phage display. J. Mol. Biol. 244, 361-369.
14. Daniels, D. A. and Lane, D. P. (1994) The characterisation of p53 binding phage isolated from phage peptide display libraries. J. Mol. Biol. 243, 639-652.
15. Motti, C., Nuzzo, M., Meola, A., Galfre, G., Felici, F., Cortese, R., Nicosia, A., and Monaci, P. (1994) Recognition by human sera and immunogenicity of HBsAg mimotopes selected from an M13 phage display library. Gene 146, 191-198.
16. McCafferty, J., Griffiths, A. D., Winter, G., and Chiswell, D. J. (1990) Phage antibodies: filamentous phage displaying antibody variable domains. Nature 348, 552-554.
17. Barbas, C. F., III, Kang, A. S., Lerner, R. A., and Benkovic, S. J. (1991) Assembly of combinatorial antibody libraries on phage surfaces: the gene III site. Proc. Natl. Acad. Sci. USA 88, 7978-7982.
18. AB Assembly and enrichment in a monovalent phage display system. BioTechnology 9, 1373-1377.
19. Williamson, R. A., Burioni, R., Sanna, P. P., Partridge, L. J., Barbas, C. F., III and Burton, D. R. (1993) Human monoclonal antibodies against a plethora of viral pathogens from single combinatorial libraries. Proc. Natl. Acad. Sci. USA 90, 4141-4145.
20. Marks, J. D., Hoogenboom, H. R., Bonnert, T. P., McCafferty, J., Griffiths, A. D., and Winter, G. (1991) By-passing immunization. Human antibodies from V-gene libraries displayed on phage. J. Mol. Biol. 222, 581-597.
21. Nissim, A., Hoogenboom, H. R., Tomlinson, I. M., Flynn, G., Midgley, C., Lane, D., and Winter, G. (1994) Antibody fragments from a 'single pot' phage display library as immunochemical reagents. EMBO J. 13, 692-698.
22. Janda, K. D., Lo, C. H., Li, T., Barbas, C. F., III, Wirsching, P., and Lerner, R. A. (1994) Direct selection for a catalytic mechanism from combinatorial antibody libraries. Proc. Natl. Acad. Sci. USA 91, 2532-2536.
23. Griffiths, A. D., Williams, S. C., Hartley, O., Tomlinson, I. M., Waterhouse, P., Crosby, W. L., Kontermann, R. E., Jones, P. T., Low, N. M., Allison, T. J., Prospero, T. D., Hoogenboom, H. R., Nissim, A., Cox, J. P. L., Harrison, J. L., Zaccolo, M., Gherardi, E., and Winter, G. (1994) Isolation of high affinity human antibodies directly from large synthetic repertoires. EMBO J. 13, 3245-3260.
24. Gram, H., Marconi, L. A., Barbas, C. F., III, Collet, T. A., Lerner, R. A., and Kang, A. S. (1992) In vitro selection and affinity maturation of antibodies from a naive combinatorial immunoglobulin library. Proc. Natl. Acad. Sci. USA 89, 3576-3580.
25. Irving, R. and Hudson, P. (1995) Superseding hybridoma technology with phage display libraries, in Monoclonal Antibodies: The Second Generation (Zola, H., ed.), BIOS Scientific, Oxford, UK.
26. Crameri, A. and Stemmer, W. P. C. (1995) Combinatorial multiple cassette mutagenesis creates all the permutations of mutant and wild-type sequences. BioTechniques 18, 194-196.
27. Glaser, S. M., Yelton, D. E., and Huse, W. D. (1992) Antibody engineering by codon-based mutagenesis in a filamentous phage vector system. J. Immunol. 149, 3903-3913.
28. Marks, J. D., Griffiths, A. D., Malmqvist, M., Clackson, T. P., Bye, J. M., and Winter, G. (1992) By-passing immunisation: building high affinity human antibodies by chain shuffling. Bio/Technology 10, 779-783.
29. Barbas, C. F., III, Crowe, J. E., Jr., Cababa, D., Jones, T., Zebedee, S. L., Murphy, B. R., Chanock, R. M., and Burton, D. R. (1992) Human monoclonal Fab fragments derived from a combinatorial library bind to respiratory syncitial virus F glycoprotein and neutralise infectivity. Proc. Natl. Acad. Sci. USA 89, 10,164-10,168.
30. Meulemans, E. V., Slobbe, R., Wasterval, P., Ramackers, F. C., and van Eys, G. J. (1994) Selection of phage-displayed antibodies specific for a cytoskeletal antigen by competitive elution with a monoclonal antibody. J. Mol. Biol. 244, 353-360.
31. Jespers, L. S., Roberts, A., Mahler, S. M., Winter, G., and Hoogenboom, H. R. (1994) Guiding selection of human antibodies from phage display repertoires to a single epitope of an antigen. Bio/Technology 12, 899-903.
32. Lowman, H. B. and Wells, J. A. (1993) Affinity maturation of human growth hormone by monovalent phage display. J. Mol. Biol. 234, 564-578.
33. Corey, D. R., Shiau, A. K., Yang, Q., Janowski, B. A., and Craik, C. S. (1993) Trypsin display on the surface of bacteriophage. Gene 128, 129-134.
34. Pannekoek, H., van Meijer, M., Schleef, R. R., Loskutoff, D. J., and Barbas, C. F., III. (1993) Functional display of human plasminogen-activator inhibitor 1. Gene 128, 135-140.
35. Robertson, M. W. (1993) Phage and Escherichia coli expression of the human high affinity immunoglobulin E receptor alpha-subunit ectodomain. Domain localization of the IgE-binding site. J. Biol. Chem. 268, 12,736-12,743.
36. Saggio, I., Gloaguen, I., and Laufer, R. (1995) Functional phage display of ciliary neurotrophic factor. Gene 152, 35-39.
37. Gram, H., Strittmatter, U., Lorenz, M., Gluck, D., and Zenke, G. (1993) Phage display as a rapid gene expression system: production of bioactive cytokine-phage and generation of neutralizing monoclonal antibodies. J. Immunol. Methods 161, 169-176.
38. Jespers, L. S., Messens, J. H., De Keyser, A., Eeckhout, D., Van Den Brande, I., Gansemans, Y. G., Lauwereys, M. J., Vlasuk, G. P., and Stanssens, P. E. (1995) Surface expression and ligand-based selection of cDNAs fused to filamentous phage gene VI. Bio/Technology 13, 378-382.
39. Crameri, R., Jaussi, R., Menz, G., and Blaser, K. (1994) Display of expression products of cDNA libraries on phage surfaces. A versatile screening system for selective isolation of genes by specific gene-product/ligand interaction. Eur. J. Biochem. 226, 53-58.
40. Jacobsen, K. and Frykberg, L. (1995) Cloning of ligand-binding domains of bacterial receptors by phage display. BioTechniques 18, 878-885.
41. Hawkins, R. E., Russell, S. J., and Winter, G. (1992) Selection of phage antibodies by binding affinity. Mimicking affinity maturation. J. Mol. Biol. 226, 889-896.
42. Barrett, R. W., Cwirla, S. E., Ackerman, M. S., Olson, A. M., Peters, E. A., and Dower, W. J. (1992) Selective enrichment and characterization of high affinity ligands from collections of random peptides on filamentous phage. Anal. Biochem. 204, 357-364.
43. Dyson, M. R., Germaschewski, V., and Murray, K. (1995) Direct measurement via phage titre of the dissociation constants in solution of fusion phage-substrate complexes. Nucl. Acids Res. 23, 1531-1535.
44. Kretzschmar, T., Zimmermann, C., and Geiser, M. (1995) Selection procedures for non-matured phage antibodies: a quantitative comparison and optimisation strategies. Anal. Biochem. 224, 413-419.
45. Ørum, H., Anderson, P. S., Øster, A., Johansen, L. K., Ruse, E., Bjørnvad, M., Svendson, I., and Engberg, J. (1993) Efficient methods for constructing comprehensive murine Fab libraries displayed on phage. Nucl. Acids Res. 21, 4491-4498.
46. Söderlind, E., Lagerkvist, A. C. S., Duñeas, M., Malmborg, A., Ayala, M., Danielsson, L., and Borrebaeck, C. A. (1993) Chaperonin assisted phage display of antibody fragments on filamentous bacteriophage. Bio/Technology 11, 503-507.
47. Soumillion, P., Jespers, L., Bouchet, M., Marchand-Brynaert, J., Winter, G., and Fastrez, J. (1994) Selection of beta-lactamase on filamentous bacteriophage by catalytic activity. J. Mol. Biol. 237, 415-422.
48. Raconjac, J. R. and Model, P. (1994) The influence of the reducing agent dithiothreitol in vitro on infectivity of f1 particles. Gene 142, 153, 154.
49. Kremser, A. and Rasched, I. (1994) The adsorption protein of filamentous phage fd: assignment of its disulfide bridges and identification of the domain incorporated in the coat. Biochemistry 33, 13,954-13,958.
50. Dueñas, M. and Borrebaeck, C. A. K. (1994) Clonal selection and amplification of phage displayed antibodies by linking antigen recognition and phage replication. Bio/Technology 12, 999-1002.
51. Ames, R. S., Tornetta, M. A., Jones, C. S., and Tsui, P. (1994) Isolation of neutralizing anti-C5a monoclonal antibodies from a filamentous phage monovalent Fab display library. J. Immunol 152, 4572-4581.
52. Portolano, S., McLachlan, S. M., and Rapoport, B. (1993) High affinity, thyroid-specific human autoantibodies displayed on the surface of filamentous phage use V genes similar to other autoantibodies. J. Immunol. 151, 2839-2851.
53. Marks, J. D., Ouwehand, W. H., Bye, J. M., Finnern, R., Gorrick, B. D., Voak, D., Thorpe, S. J., Hughes-Jones, N. C., and Winter, G. (1993) Human antibody fragments specific for human blood group antigens from a phage display library. Bio/Technology 11, 1145-1149.
54. Kruif, J., Terstappen, L., Boel, E., and Logtenberg, T. (1995) Rapid selection of cell subpopulation specific human monoclonal antibodies from a synthetic phage antibody library. Proc. Natl. Acad. Sci. USA 92, 3938-3942.