Analysis of gene expression in the bovine corpus luteum through generation and characterisation of 960 ESTs

Biochimica et Biophysica Acta - Gene Structure and Expression

Volumn 1679, Issue 1, 2004, Pages 10-17

  Casey, Orla M ^a,b   Fitzpatrick, Richard ^a   McInerney, James O ^c   Morris, Dermot G ^a   Powell, Richard ^b   Sreenan, Joseph M ^a  

^a TEAGASC   (Ireland)

^b NATIONAL UNIVERSITY OF IRELAND   (Ireland)

^c NATIONAL UNIVERSITY OF IRELAND   (Ireland)

Author keywords

Bioinformatics; Bovine (Bos taurus); Corpus luteum; Expressed sequence tag; Northern blot

Indexed keywords

CHOLESTEROL; GROWTH FACTOR; MESSENGER RNA; NUCLEOTIDE; PROGESTERONE; SOMATOMEDIN C; SQUALENE MONOOXYGENASE;

AMINO ACID SEQUENCE; ANIMAL CELL; APOPTOSIS; ARTICLE; CONTROLLED STUDY; CORPUS LUTEUM; DATA BASE; DNA SEQUENCE; DOWN REGULATION; ESTRUS CYCLE; EXTRACELLULAR MATRIX; GENE EXPRESSION; GENETIC ANALYSIS; LIPID METABOLISM; LUTEAL CELL; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; SCREENING TEST; STEROIDOGENESIS;

ANIMALS; CATTLE; CORPUS LUTEUM; DNA PROBES; DNA, COMPLEMENTARY; EXPRESSED SEQUENCE TAGS; FEMALE; GENE EXPRESSION PROFILING; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION;

BOS; BOS TAURUS; BOVINAE;

EID: 3042735782     PISSN: 01674781     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbaexp.2004.03.011     Document Type: Article

References (46)

1. Hansel W., Blair R.M. Bovine corpus luteum: a historic overview and implications for future research. Theriogenology. 45:1996;1267-1294
2. Fields M.J., Fields P.A. Morphological characteristics of the bovine corpus luteum during the estrous cycle and pregnancy. Theriogenology. 45:1996;1295-1325
3. Reynolds L.P., Redmer D.A. Growth and development of the corpus luteum. J. Reprod. Fertil. Suppl. 54:1999;181-191
4. Diaz F.J., Anderson L.E., Wu Y.L., Rabot A., Tsai S.J., Wiltbank M.C. Regulation of progesterone and prostaglandin F2alpha production in the CL. Mol. Cell. Endocrinol. 191:2002;65-80
5. Milvae R.A., Hinckley S.T., Carlson J.C. Luteotropic and luteolytic mechanisms in the bovine corpus luteum. Theriogenology. 45:1996;1327-1349
6. Pate J.L. Cellular components involved in luteolysis. J. Anim. Sci. 72:1994;1884-1890
7. Webb R., Woad K.J., Armstrong D.G. Corpus luteum (CL) function: local control mechanisms. Domest. Anim. Endocrinol. 23:2002;277-285
8. Juengel J.L., Niswender G.D. Molecular regulation of luteal progesterone synthesis in domestic ruminants. J. Reprod. Fertil. Suppl. 54:1999;193-205
9. Reinhart A.J., Williams S.C., Stocco D.M. Transcriptional regulation of the StAR gene. Mol. Cell. Endocrinol. 151:1999;161-169
10. Garrett J.E., Geisert R.D., Zavy M.T., Morgan G.L. Evidence for maternal regulation of early conceptus growth and development in beef cattle. J. Reprod. Fertil. 84:1988;437-446
11. Starbuck G.R., Darwash A.O., Mann G.E., Lamming G.E. The detection and treatment of post insemination progesterone insufficiency in dairy cows. BSAS Occas. Publ. 26:2001;447-450
12. Butler W.R., Calaman J.J., Beam S.W. Plasma and milk urea nitrogen in relation to pregnancy rate in lactating dairy cattle. J. Anim. Sci. 74:1996;858-865
13. Adams M.D., Kelley J.M., Gocayne J.D., Dubnick M., Polymeropoulos M.H., Xiao H., Merril C.R., Wu A., Olde B., Moreno R.F., et al. Complementary DNA sequencing: expressed sequence tags and human genome project. Science. 252:1991;1651-1656
14. Ma R.Z., van Eijk M.J., Beever J.E., Guerin G., Mummery C.L., Lewin H.A. Comparative analysis of 82 expressed sequence tags from a cattle ovary cDNA library. Mamm. Genome. 9:1998;545-549
15. Sonstegard T.S., Capuco A.V., White J., Van Tassell C.P., Connor E.E., Cho J., Sultana R., Shade L., Wray J.E., Wells K.D., Quackenbush J. Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index. Mamm. Genome. 13:2002;373-379
16. Ponsuksili S., Wimmers K., Adjaye J., Schellander K. A source for expression profiling in single preimplantation bovine embryos. Theriogenology. 57:2002;1611-1624
17. Taniguchi Y., Lejukole H.Y., Yamada T., Akagi S., Takahashi S., Shimizu M., Yasue H., Sasaki Y. Analysis of expressed sequence tags from a cDNA library of somatic nuclear transfer-derived cloned bovine whole foetus. Anim. Genet. 32:2001;1-6
18. Smith T.P., Grosse W.M., Freking B.A., Roberts A.J., Stone R.T., Casas E., Wray J.E., White J., Cho J., Fahrenkrug S.C., Bennett G.L., Heaton M.P., Laegreid W.W., Rohrer G.A., Chitko-McKown C.G., Pertea G., Holt I., Karamycheva S., Liang F., Quackenbush J., Keele J.W. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Genome Res. 11:2001;626-630
19. Bonsdorff T., Eggen A., Gautier M., Asheim H.C., Ronningen K., Lingaas F., Olsaker I. Identification and physical mapping of genes expressed in the corpus luteum in cattle. Anim. Genet. 34:2003;325-333
20. Band M.R., Olmstead C., Everts R.E., Liu Z.L., Lewin H.A. A 3800 gene microarray for cattle functional genomics: comparison of gene expression in spleen, placenta, and brain. Anim. Biotechnol. 13:2002;163-172
21. Ishiwata H., Katsuma S., Kizaki K., Patel O.V., Nakano H., Takahashi T., Imai K., Hirasawa A., Shiojima S., Ikawa H., Suzuki Y., Tsujimoto G., Izaike Y., Todoroki J., Hashizume K. Characterization of gene expression profiles in early bovine pregnancy using a custom cDNA microarray. Mol. Reprod. Dev. 65:2003;9-18
22. Dorroch U., Goldammer T., Brunner R.M., Kata S.R., Kuhn C., Womack J.E., Schwerin M. Isolation and characterization of hepatic and intestinal expressed sequence tags potentially involved in trait differentiation between cows of different metabolic type. Mamm. Genome. 12:2001;528-537
23. Looft C., Reinsch N., Karall-Albrecht C., Paul S., Brink M., Thomsen H., Brockmann G., Kuhn C., Schwerin M., Kalm E. A mammary gland EST showing linkage disequilibrium to a milk production QTL on bovine Chromosome 14. Mamm. Genome. 12:2001;646-650
24. Sambrook J., Fritsch E.F., Maniatis T. Molecular Cloning: A Laboratory Manual. 1990;Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
25. Davey G.C., Caplice N.C., Martin S.A., Powell R. A survey of genes in the Atlantic salmon (Salmo salar) as identified by expressed sequence tags. Gene. 263:2001;121-130
26. Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 215:1990;403-410
27. Ireland J.J., Murphee R.L., Coulson P.B. Accuracy of predicting stages of bovine estrous cycle by gross appearance of the corpus luteum. J. Dairy Sci. 63:1980;155-160
28. TM Users Guide. 8.1 ed. 2001;Statistical Analysis Systems Institute, Cary, NC
29. Dworkin M.B., Dawid I.B. Use of a cloned library for the study of abundant poly(A)+RNA during Xenopus laevis development. Dev. Biol. 76:1980;449-464
30. Nelson P.S., Hawkins V., Schummer M., Bumgarner R., Ng W.L., Ideker T., Ferguson C., Hood L. Negative selection: a method for obtaining low-abundance cDNAs using high-density cDNA clone arrays. Genet. Anal. 15:1999;209-215
31. Lin C.T., Sargan D.R. Generation and analysis of canine retinal ESTs: isolation and expression of retina-specific gene transcripts. Biochem. Biophys. Res. Commun. 282:2001;394-403
32. Martin S.A., Caplice N.C., Davey G.C., Powell R. EST-based identification of genes expressed in the liver of adult Atlantic salmon (Salmo salar). Biochem. Biophys. Res. Commun. 293:2002;578-585
33. Bazer F.W. The Endocrinology of Pregnancy. 1998;177-197 Humana Press, Totowa, NJ
34. Adams M.D., Kerlavage A.R., Fleischmann R.D., Fuldner R.A., Bult C.J., Lee N.H., Kirkness E.F., Weinstock K.G., Gocayne J.D., White O., et al. Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. Nature. 377:1995;3-174
35. Niswender G.D., Juengel J.L., Silva P.J., Rollyson M.K., McIntush E.W. Mechanisms controlling the function and lifespan of the corpus luteum. Physiol. Rev. 80:2000;1-29
36. Lutz M., Burke L.J., Barreto G., Goeman F., Greb H., Arnold R., Schultheiss H., Brehm A., Kouzarides T., Lobanenkov V., Renkawitz R. Transcriptional repression by the insulator protein CTCF involves histone deacetylases. Nucleic Acids Res. 28:2000;1707-1713
37. Juengel J.L., Garverick H.A., Johnson A.L., Youngquist R.S., Smith M.F. Apoptosis during luteal regression in cattle. Endocrinology. 132:1993;249-254
38. Wittke I., Madge B., Wiedemeyer R., Kimchi A., Schwab M. DAP-5 is involved in MycN/IFNgamma-induced apoptosis in human neuroblastoma cells. Cancer Lett. 162:2001;237-243
39. Komatsu K., Manabe N., Kiso M., Shimabe M., Miyamoto H. Changes in localization of immune cells and cytokines in corpora lutea during luteolysis in murine ovaries. J. Exp. Zool., Suppl. 296:2003;152-159
40. Ono T. The first step of oxygenation in cholesterol biosynthesis. Biochem. Biophys. Res. Commun. 292:2002;1283-1288
41. Johnson M.C., Devoto L., Retamales I., Kohen P., Troncoso J.L., Aguilera G. Localization of insulin-like growth factor (IGF-I) and IGF-I receptor expression in human corpora lutea: role on estradiol secretion. Fertil. Steril. 65:1996;489-494
42. Fraser H.M., Lunn S.F., Kim H., Duncan W.C., Rodger F.E., Illingworth P.J., Erickson G.F. Changes in insulin-like growth factor-binding protein-3 messenger ribonucleic acid in endothelial cells of the human corpus luteum: a possible role in luteal development and rescue. J. Clin. Endocrinol. Metab. 85:2000;1672-1677
43. Oh Y., Nagalla S.R., Yamanaka Y., Kim H.S., Wilson E., Rosenfeld R.G. Synthesis and characterization of insulin-like growth factor-binding protein (IGFBP)-7. Recombinant human mac25 protein specifically binds IGF-I and -II. J. Biol. Chem. 271:1996;30322-30325
44. Hwa V., Oh Y., Rosenfeld R.G. The insulin-like growth factor-binding protein (IGFBP) superfamily. Endocr. Rev. 20:1999;761-787
45. Wandji S.A., Gadsby J.E., Barber J.A., Hammond J.M. Messenger ribonucleic acids for MAC25 and connective tissue growth factor (CTGF) are inversely regulated during folliculogenesis and early luteogenesis. Endocrinology. 141:2000;2648-2657
46. Sprenger C.C., Damon S.E., Hwa V., Rosenfeld R.G., Plymate S.R. Insulin-like growth factor binding protein-related protein 1 (IGFBP-rP1) is a potential tumor suppressor protein for prostate cancer. Cancer Res. 59:1999;2370-2375