-
1
-
-
0000184111
-
Effects of chemical changes on the activity of the ribonucleic acid of the tobacco mosaic virus
-
Schuster,H. and Schramm,G. (1958) Effects of chemical changes on the activity of the ribonucleic acid of the tobacco mosaic virus. Naturforsch., 13B, 697-704.
-
(1958)
Naturforsch.
, vol.13 B
, pp. 697-704
-
-
Schuster, H.1
Schramm, G.2
-
2
-
-
0014223593
-
The reaction of ribonucleosides with nitrous acid. Side products and kinetics
-
Shapiro,R. and Pohl,S.H. (1968) The reaction of ribonucleosides with nitrous acid. Side products and kinetics. Biochemistry, 7, 448-455.
-
(1968)
Biochemistry
, vol.7
, pp. 448-455
-
-
Shapiro, R.1
Pohl, S.H.2
-
4
-
-
0014212023
-
2-cross-linked DNA during transformation of Bacillus subtilis
-
2-cross-linked DNA during transformation of Bacillus subtilis. Biochim. Biophys. Acta, 142, 238-244.
-
(1967)
Biochim. Biophys. Acta
, vol.142
, pp. 238-244
-
-
Becker Jr., E.F.1
-
5
-
-
0000373389
-
Antimicrobial food additives
-
(ed.) 2nd edn. CRC Press, Cleveland, OH
-
Furia,T.E. (ed.) (1972) Antimicrobial food additives. Handbook of Food Additives. 2nd edn. CRC Press, Cleveland, OH, pp. 150-155.
-
(1972)
Handbook of Food Additives
, pp. 150-155
-
-
Furia, T.E.1
-
6
-
-
0038298263
-
Structure and function of cross-linked DNA.I Reversible denaturation and Bacillus subtilis transformation
-
Becker,E.F.Jr, Zimmerman,F.K. and Geiduschek,E.P. (1964) Structure and function of cross-linked DNA.I Reversible denaturation and Bacillus subtilis transformation. J. Mol. Biol., 8, 377-391.
-
(1964)
J. Mol. Biol.
, vol.8
, pp. 377-391
-
-
Becker Jr., E.F.1
Zimmerman, F.K.2
Geiduschek, E.P.3
-
7
-
-
0025823709
-
Nitrous acid cross-links duplex DNA fragments through deoxyguanosine residues at the sequence 5′-CG
-
Kirchner,J.J. and Hopkins,P.B. (1991) Nitrous acid cross-links duplex DNA fragments through deoxyguanosine residues at the sequence 5′-CG. J. Am. Chem. Soc., 113, 4681-4682.
-
(1991)
J. Am. Chem. Soc.
, vol.113
, pp. 4681-4682
-
-
Kirchner, J.J.1
Hopkins, P.B.2
-
8
-
-
0001602760
-
Interstrand cross-linking of duplex DNA by nitrous acid: Covalent structure of the dG-to-dG cross-link at the sequence 5′-CG
-
Kirchner,J.J., Sigurdsson,S.T. and Hopkins,P.B. (1992) Interstrand cross-linking of duplex DNA by nitrous acid: covalent structure of the dG-to-dG cross-link at the sequence 5′-CG. J. Am. Chem. Soc., 114, 4021-4027.
-
(1992)
J. Am. Chem. Soc.
, vol.114
, pp. 4021-4027
-
-
Kirchner, J.J.1
Sigurdsson, S.T.2
Hopkins, P.B.3
-
9
-
-
0017767390
-
Isolation and identification of cross-linked nucleosides from nitrous acid treated deoxribonucleic acid
-
Shapiro,R., Dubelman,S., Feinberg,A.M., Crain,P.F. and McCloskey,J.A. (1977) Isolation and identification of cross-linked nucleosides from nitrous acid treated deoxribonucleic acid. J. Am. Chem. Soc., 99, 302-303.
-
(1977)
J. Am. Chem. Soc.
, vol.99
, pp. 302-303
-
-
Shapiro, R.1
Dubelman, S.2
Feinberg, A.M.3
Crain, P.F.4
McCloskey, J.A.5
-
10
-
-
3042788019
-
Interstrand cross-linking of duplex DNA by nitrous acid: Determination of the sequence preference at nucleotide resolution
-
Sarma,R.H. and Sarma,M.H. (eds), Adenine Press, Albany
-
Kirchner,J.J., Solomon,M.S. and Hopkins,P.B. (1992) Interstrand cross-linking of duplex DNA by nitrous acid: determination of the sequence preference at nucleotide resolution. In Sarma,R.H. and Sarma,M.H. (eds), Structure and Function, Volume 1: Nucleic Acids. Adenine Press, Albany, pp. 171-182.
-
(1992)
Structure and Function, Volume 1: Nucleic Acids
, pp. 171-182
-
-
Kirchner, J.J.1
Solomon, M.S.2
Hopkins, P.B.3
-
11
-
-
0029105327
-
Combined quantum and molecular mechanical study of DNA cross-linking by nitrous acid
-
Elcock,A.H., Lyne,P.D., Mulholland,A.J., Nandra,A. and Richards,W.G. (1995) Combined quantum and molecular mechanical study of DNA cross-linking by nitrous acid. J. Am. Chem. Soc., 117, 4706-4707.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 4706-4707
-
-
Elcock, A.H.1
Lyne, P.D.2
Mulholland, A.J.3
Nandra, A.4
Richards, W.G.5
-
12
-
-
0033516280
-
Chemical synthesis and preliminary structural characterization of a nitrous acid interstrand cross-linked duplex DNA
-
Harwood,E.A., Sigurdsson,S.T., Edfeldt,N.B.F., Reid,B.R. and Hopkins,P.B. (1999) Chemical synthesis and preliminary structural characterization of a nitrous acid interstrand cross-linked duplex DNA. J. Am. Chem. Soc., 121, 5081-5082.
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 5081-5082
-
-
Harwood, E.A.1
Sigurdsson, S.T.2
Edfeldt, N.B.F.3
Reid, B.R.4
Hopkins, P.B.5
-
13
-
-
0026951903
-
Gradient-tailored excitation for single quantum NMR spectroscopy of aqueous solutions
-
Piotto,M., Saudek,V. and Sklénar,V. (1992) Gradient-tailored excitation for single quantum NMR spectroscopy of aqueous solutions. J. Biomol. NMR, 2, 661-665.
-
(1992)
J. Biomol. NMR
, vol.2
, pp. 661-665
-
-
Piotto, M.1
Saudek, V.2
Sklénar, V.3
-
15
-
-
0029011701
-
A second generation force field for the simulation of proteins, nucleic acids and organic molecules
-
Cornell,W.D., Cieplak,P., Bayly,C.I., Gould,I.R., Merz,K.M.,Jr, Ferguson,D.M., Spellmeyer,D.C., Fox,T., Caldwell,J.W. and Kollman,P.A. (1995) A second generation force field for the simulation of proteins, nucleic acids and organic molecules. J. Am. Chem. Soc., 117, 5179-5197.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz Jr., K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
16
-
-
0029593488
-
The structure of a novel DNA duplex formed by human centromere d(TGGAA) repeats with possible implications for chromosome attachment during mitosis
-
Zhu,L., Chou,S.-H. and Reid,B.R. (1995) The structure of a novel DNA duplex formed by human centromere d(TGGAA) repeats with possible implications for chromosome attachment during mitosis. J. Mol. Biol., 254, 623-637.
-
(1995)
J. Mol. Biol.
, vol.254
, pp. 623-637
-
-
Zhu, L.1
Chou, S.-H.2
Reid, B.R.3
-
17
-
-
17544394367
-
Hairpin loops consisting of single adenine residues closed by sheared A+A and G·G pairs formed by the DNA triplets AAA and GAG: Solution structure of the d(GTACAAAGTAC) hairpin
-
Chou,S.-H., Zhu,L., Gao,Z., Cheng,J.-W. and Reid,B.R. (1996) Hairpin loops consisting of single adenine residues closed by sheared A+A and G·G pairs formed by the DNA triplets AAA and GAG: solution structure of the d(GTACAAAGTAC) hairpin. J. Mol. Biol., 264, 981-1001.
-
(1996)
J. Mol. Biol.
, vol.264
, pp. 981-1001
-
-
Chou, S.-H.1
Zhu, L.2
Gao, Z.3
Cheng, J.-W.4
Reid, B.R.5
-
18
-
-
0029779952
-
Structural variation among retroviral primer-DNA junctions: Solution structure of the HIV-1 (-)-strand Okazaki fragment r(gcca)d(CTGC)·d(GCAGTGGC)
-
Fedoroff,O.Y., Salazar,M. and Reid,B.R. (1996) Structural variation among retroviral primer-DNA junctions: solution structure of the HIV-1 (-)-strand Okazaki fragment r(gcca)d(CTGC)·d(GCAGTGGC). Biochemistry, 35, 11070-11080.
-
(1996)
Biochemistry
, vol.35
, pp. 11070-11080
-
-
Fedoroff, O.Y.1
Salazar, M.2
Reid, B.R.3
-
19
-
-
0031558792
-
Centromeric pyrimidine strands fold into an intercalated motif by forming a double hairpin with a novel T:G:G:T tetrad: Solution structure of the d(TCCCGTTTCCA) dimer
-
Gallego,J., Chou,S.-H. and Reid,B.R. (1997) Centromeric pyrimidine strands fold into an intercalated motif by forming a double hairpin with a novel T:G:G:T tetrad: solution structure of the d(TCCCGTTTCCA) dimer. J. Mol. Biol., 273, 840-856.
-
(1997)
J. Mol. Biol.
, vol.273
, pp. 840-856
-
-
Gallego, J.1
Chou, S.-H.2
Reid, B.R.3
-
20
-
-
0029267350
-
An improved NOESY simulation program for partially relaxed spectra: BIRDER
-
Zhu,L. and Reid,B.R. (1995) An improved NOESY simulation program for partially relaxed spectra: BIRDER. J. Magn. Reson. Ser. B, 106, 227-235.
-
(1995)
J. Magn. Reson. Ser. B
, vol.106
, pp. 227-235
-
-
Zhu, L.1
Reid, B.R.2
-
21
-
-
0029071401
-
Conformational flexibility in DNA duplexes containing single G·G mismatches
-
Lane,A.N. and Peck,B. (1995) Conformational flexibility in DNA duplexes containing single G·G mismatches. Eur. J. Biochem, 230, 1073-1087.
-
(1995)
Eur. J. Biochem.
, vol.230
, pp. 1073-1087
-
-
Lane, A.N.1
Peck, B.2
-
22
-
-
0030448134
-
Solution structure of two mismatches G·G and I·I in the K-ras gene context by nuclear magnetic resonance and molecular dynamics
-
Faibis,V., Cognet,J.A.H., Boulard,Y., Sowers,L.C. and Fazakerly,G.V. (1996) Solution structure of two mismatches G·G and I·I in the K-ras gene context by nuclear magnetic resonance and molecular dynamics. Biochemistry, 35, 14452-14464.
-
(1996)
Biochemistry
, vol.35
, pp. 14452-14464
-
-
Faibis, V.1
Cognet, J.A.H.2
Boulard, Y.3
Sowers, L.C.4
Fazakerly, G.V.5
-
24
-
-
0015930114
-
Determination of the preferred conformations constrained along the C-4′-C-5′ and C-5′-O-5′ bonds of β -5′-nucleotides in solution
-
Sarma,R.H., Mynott,R.J., Wood,D.J. and Hruska,F.E. (1973) Determination of the preferred conformations constrained along the C-4′-C-5′ and C-5′-O-5′ bonds of β-5′ -nucleotides in solution. J. Am. Chem. Soc., 95, 6457-6459.
-
(1973)
J. Am. Chem. Soc.
, vol.95
, pp. 6457-6459
-
-
Sarma, R.H.1
Mynott, R.J.2
Wood, D.J.3
Hruska, F.E.4
-
25
-
-
0000265069
-
Conformational analysis of nucleic acids. Determination of backbone geometry of single-helical RNA and DNA in aqueous solution
-
Altona,C. (1982) Conformational analysis of nucleic acids. Determination of backbone geometry of single-helical RNA and DNA in aqueous solution. Recl. Trav. Chim. Pays-Bas, 101, 413-433.
-
(1982)
Recl. Trav. Chim. Pays-Bas
, vol.101
, pp. 413-433
-
-
Altona, C.1
-
27
-
-
0024293254
-
31p chemical shifts of double-helical nucleic acids
-
31p chemical shifts of double-helical nucleic acids. Biochemistry, 27, 7223-7237.
-
(1988)
Biochemistry
, vol.27
, pp. 7223-7237
-
-
Gorenstein, D.G.1
Schroeder, S.A.2
Fu, J.M.3
Metz, J.T.4
Roongta, V.5
Jones, C.L.6
-
28
-
-
0025734548
-
The three-dimensional structure of a DNA hairpin in solution: Two-dimensional NMR studies and structural analysis of d(ATCCTATTTATAGGAT)
-
Blommers,M.J.J., van de Ven,F.J.M., van der Marel,G.A., van Boom,J.H. and Hilbers,C.W. (1991) The three-dimensional structure of a DNA hairpin in solution: two-dimensional NMR studies and structural analysis of d(ATCCTATTTATAGGAT). Eur. J. Biochem., 201, 33-51.
-
(1991)
Eur. J. Biochem.
, vol.201
, pp. 33-51
-
-
Blommers, M.J.J.1
van de Ven, F.J.M.2
van der Marel, G.A.3
van Boom, J.H.4
Hilbers, C.W.5
-
29
-
-
3042777528
-
Sequence context effect on the structure of nitrous acid induced DNA interstrand cross-links
-
Edfeldt,N.B.F., Harwood,E.A., Sigurdsson,S.Th., Hopkins,P.B. and Reid,B.R. (2004) Sequence context effect on the structure of nitrous acid induced DNA interstrand cross-links. Nucleic Acids Res., 32, 2795-2801.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 2795-2801
-
-
Edfeldt, N.B.F.1
Harwood, E.A.2
Sigurdsson, S.Th.3
Hopkins, P.B.4
Reid, B.R.5
-
30
-
-
0016277532
-
The tautomeric form of inosine in aqueous solution
-
Evans,F.E. and Sarma,R.H. (1974) The tautomeric form of inosine in aqueous solution. J. Mol. Biol., 89, 249-253.
-
(1974)
J. Mol. Biol.
, vol.89
, pp. 249-253
-
-
Evans, F.E.1
Sarma, R.H.2
-
31
-
-
0024121469
-
Calibration of DNA curvature and a unified description of sequence-directed bending
-
Koo,H.-S. and Crothers,D.M. (1988) Calibration of DNA curvature and a unified description of sequence-directed bending. Proc. Natl Acad. Sci. USA, 85, 1763-1767.
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 1763-1767
-
-
Koo, H.-S.1
Crothers, D.M.2
-
32
-
-
0001883517
-
Base-pair opening in double-stranded nucleic acids
-
Eckstein,F. and Lilley,D.M.J. (eds), Springer-Verlag, Heidelberg
-
Guéron,M. and Leroy,J.-L. (1992) Base-pair opening in double-stranded nucleic acids. In Eckstein,F. and Lilley,D.M.J. (eds), Nucleic Acids and Molecular Biology, vol. 6, Springer-Verlag, Heidelberg, pp. 1-22.
-
(1992)
Nucleic Acids and Molecular Biology
, vol.6
, pp. 1-22
-
-
Guéron, M.1
Leroy, J.-L.2
-
33
-
-
0029585833
-
Solution structure of a cisplatin-induced DNA interstrand cross-link
-
Huang,H., Zhu,L., Reid,B.R., Drobny,G.P. and Hopkins,P.B. (1995) Solution structure of a cisplatin-induced DNA interstrand cross-link. Science, 270, 1842-1845.
-
(1995)
Science
, vol.270
, pp. 1842-1845
-
-
Huang, H.1
Zhu, L.2
Reid, B.R.3
Drobny, G.P.4
Hopkins, P.B.5
-
34
-
-
0033560940
-
Crystal structure of a double-stranded DNA containing a cisplatin interstrand cross-link at 1.63 Å resolution: Hydration at the platinated site
-
Coste,F., Malinge,J.-M., Serre,L., Shepard,W., Roth,M., Leng,M. and Zelwer,C. (1999) Crystal structure of a double-stranded DNA containing a cisplatin interstrand cross-link at 1.63 Å resolution: hydration at the platinated site. Nucleic Acids Res., 27, 1837-1846.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 1837-1846
-
-
Coste, F.1
Malinge, J.-M.2
Serre, L.3
Shepard, W.4
Roth, M.5
Leng, M.6
Zelwer, C.7
-
35
-
-
0032431057
-
Crystal structure of the Oxytricha nova telomere end binding protein complexed with single stranded DNA
-
Horvath,M.P., Schweiker,V.L., Bevilacqua,J.M., Ruggles,J.A. and Schultz,S.C. (1999) Crystal structure of the Oxytricha nova telomere end binding protein complexed with single stranded DNA. Cell, 95, 963-974.
-
(1999)
Cell
, vol.95
, pp. 963-974
-
-
Horvath, M.P.1
Schweiker, V.L.2
Bevilacqua, J.M.3
Ruggles, J.A.4
Schultz, S.C.5
-
36
-
-
0031667109
-
Structures of HhaI methyltransferase complexed with substrates containing mismatches at the target base
-
O'Gara,M., Horton,J.R., Roberts,R.J. and Cheng,X. (1998) Structures of HhaI methyltransferase complexed with substrates containing mismatches at the target base. Nature Struct. Biol., 5, 872-877.
-
(1998)
Nature Struct. Biol.
, vol.5
, pp. 872-877
-
-
O'Gara, M.1
Horton, J.R.2
Roberts, R.J.3
Cheng, X.4
-
37
-
-
0034719372
-
DNA-bound structures and mutants reveal abasic DNA binding by APE1 DNA repair and coordination
-
Mol,C.D., Izumi,T., Mitra,S. and Tainer,J.A. (2000) DNA-bound structures and mutants reveal abasic DNA binding by APE1 DNA repair and coordination. Nature, 403, 451-456.
-
(2000)
Nature
, vol.403
, pp. 451-456
-
-
Mol, C.D.1
Izumi, T.2
Mitra, S.3
Tainer, J.A.4
-
38
-
-
0031016727
-
Effects of nitrous acid treatment on the survival and mutagenesis of Escherichia coli cells lacking base excision repair (hypoxanthine-DNA glycosylase-ALK A protein) and/or nucleotide excision repair
-
Sidorkina,O., Saparbaev,M. and Laval,J. (1997) Effects of nitrous acid treatment on the survival and mutagenesis of Escherichia coli cells lacking base excision repair (hypoxanthine-DNA glycosylase-ALK A protein) and/or nucleotide excision repair. Mutagenesis, 12, 23-27.
-
(1997)
Mutagenesis
, vol.12
, pp. 23-27
-
-
Sidorkina, O.1
Saparbaev, M.2
Laval, J.3
-
39
-
-
0028130205
-
Molecular models that may account for nitrous acid mutagenesis in organisms containing double-stranded DNA
-
Hartman,Z., Henrikson,E.N., Hartman,P.E. and Cebula,T.A. (1994) Molecular models that may account for nitrous acid mutagenesis in organisms containing double-stranded DNA. Environ. Mol. Mutagen., 24, 168-175.
-
(1994)
Environ. Mol. Mutagen.
, vol.24
, pp. 168-175
-
-
Hartman, Z.1
Henrikson, E.N.2
Hartman, P.E.3
Cebula, T.A.4
-
40
-
-
0028010888
-
HhaI methyltransferase flips its target base out of the DNA helix
-
Klimasauskas,S., Kumar,S., Roberts,R.J. and Cheng,X. (1994) HhaI methyltransferase flips its target base out of the DNA helix. Cell, 76, 357-369.
-
(1994)
Cell
, vol.76
, pp. 357-369
-
-
Klimasauskas, S.1
Kumar, S.2
Roberts, R.J.3
Cheng, X.4
-
41
-
-
0029068629
-
The crystal structure of HaeIII methyltransferase covalently complexed to DNA: An extrahelical cytosine and rearranged base pairing
-
Reinisch,K.M., Chen,L., Verdine,G.L. and Lipscomb,W.N. (1995) The crystal structure of HaeIII methyltransferase covalently complexed to DNA: an extrahelical cytosine and rearranged base pairing. Cell, 82, 143-153.
-
(1995)
Cell
, vol.82
, pp. 143-153
-
-
Reinisch, K.M.1
Chen, L.2
Verdine, G.L.3
Lipscomb, W.N.4
-
42
-
-
0033529716
-
Structure of the DNA repair enzyme endonuclease IV and its DNA complex: Double-nucleotide flipping at abasic sites and three-metal-ion catalysis
-
Hosfield,D.J., Guan,Y., Haas,B.J., Cunningham,R.P. and Tainer,J.A. (1999) Structure of the DNA repair enzyme endonuclease IV and its DNA complex: double-nucleotide flipping at abasic sites and three-metal-ion catalysis. Cell, 98, 397-408.
-
(1999)
Cell
, vol.98
, pp. 397-408
-
-
Hosfield, D.J.1
Guan, Y.2
Haas, B.J.3
Cunningham, R.P.4
Tainer, J.A.5
-
43
-
-
0031827294
-
Structure of a DNA base-excision product resembling a cisplatin inter-strand adduct
-
Barrett,T.E., Savva,R., Barlow,T., Brown,T., Jiricny,J. and Pearl,L.H. (1998) Structure of a DNA base-excision product resembling a cisplatin inter-strand adduct. Nature Struct. Biol., 5, 697-701.
-
(1998)
Nature Struct. Biol.
, vol.5
, pp. 697-701
-
-
Barrett, T.E.1
Savva, R.2
Barlow, T.3
Brown, T.4
Jiricny, J.5
Pearl, L.H.6
-
44
-
-
0029904839
-
A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA
-
Slupphaug,G., Mol,C.D., Kavli,B., Arvai,A.S., Krokan,H.E. and Trainer,J.A. (1996) A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA. Nature, 384, 25-26.
-
(1996)
Nature
, vol.384
, pp. 25-26
-
-
Slupphaug, G.1
Mol, C.D.2
Kavli, B.3
Arvai, A.S.4
Krokan, H.E.5
Trainer, J.A.6
-
45
-
-
0025203162
-
Anisotropic rotation in nucleic acid fragments: Significance for determination of structures from NMR data
-
Birchall,A.J. and Lane,A.N. (1990) Anisotropic rotation in nucleic acid fragments: significance for determination of structures from NMR data. Eur. Biophys. J., 19, 73-78.
-
(1990)
Eur. Biophys. J.
, vol.19
, pp. 73-78
-
-
Birchall, A.J.1
Lane, A.N.2
|