Human infection with a P[14], G3 lapine rotavirus

Virology

Volumn 325, Issue 1, 2004, Pages 11-17

  De Leener, Karolien ^a   Rahman, Mustafizur ^a,b   Matthijnssens, Jelle ^a   Van Hoovels, Lieve ^a   Goegebuer, Truus ^a   Van Der Donck, Ingrid ^a   Van Ranst, Marc ^a  

^a REGA INSTITUTE FOR MEDICAL RESEARCH   (Belgium)

^b ICDDR B Centre for Health and Population Research   (Bangladesh)

Author keywords

Diarrhea; G type; Interspecies transmission; NSP4; P type; Phylogeny; Rabbit; Rotavirus; Sequencing; VP4; VP7

Indexed keywords

ARTICLE; CASE REPORT; DIARRHEA; FECES ANALYSIS; HOSPITALIZATION; HUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRESCHOOL CHILD; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; ROTAVIRUS; UNITED STATES; VIRUS ISOLATION; VIRUS TRANSMISSION;

ANTIGENS, VIRAL; BASE SEQUENCE; CAPSID PROTEINS; CHILD; GENOTYPE; GLYCOPROTEINS; HUMANS; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, VIRAL; ROTAVIRUS; ROTAVIRUS INFECTIONS; TOXINS, BIOLOGICAL; VIRAL NONSTRUCTURAL PROTEINS;

ANIMALIA; LAPINE ROTAVIRUS; LEPORIDAE; ORYCTOLAGUS CUNICULUS; ROTAVIRUS; ROTAVIRUS A;

EID: 3042656665     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.virol.2004.04.020     Document Type: Article

References (42)

1. Altschul S., Gish F.W., Miller W., Myers E.W., Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 215:1990;403-410
2. Banyai K., Gentsch J.R., Griffin D.D., Holmes J.L., Glass R.I., Szucs G. Genetic variability among serotype G6 human rotaviruses: identification of a novel lineage isolated in Hungary. J. Med. Virol. 71:2003;124-134
3. Bishop R.F. Natural history of human rotavirus infection. Arch. Virol. 12:1996;119-128
4. Browning G.F., Chalmers R.M., Fitzgerald T.A., Snodgrass D.R. Serological and genomic characterization of L338, a novel equine group A rotavirus G serotype. J. Gen. Virol. 72:1991;1059-1064
5. Browning G.F., Fitzgerald T.A., Chalmers R.M., Snodgrass D.R. A novel group A rotavirus G serotype: serological and genomic characterization of equine isolate FI23. J. Clin. Microbiol. 29:1991;2043-2046
6. Bryden A.S., Thouless M.E., Flewett T.H. Rotavirus and rabbits. Vet. Rec. 99:1976;323
7. Ciarlet M., Estes M.K., Conner M.E. Comparative amino acid sequence analysis of the outer capsid protein VP4 from four lapine rotavirus strains reveals identity with genotype P[14] human rotaviruses. Arch. Virol. 142:1997;1059-1069
8. Ciarlet M., Liprandi F., Conner M.E., Estes M.K. Species specificity and interspecies relatedness of NSP4 genetic groups by comparative NSP4 and sequence analysis of animal rotaviruses. Arch. Virol. 145:2000;371-383
9. Estes M.K. Rotaviruses and their replication. Fields B.N., Knipe D.M., Howley P.M. 3rd ed. Fields Virology. vol. 2:1996;1625-1655 Lippincott-Raven Publishers, Philadelphia
10. Gentsch J.R., Woods P.A., Ramachandran M., Das B.K., Leite J.P., Alfieri A., Kumar R., Bhan M.K., Glass R.I. Review of G and P typing results from a global collection of rotavirus strains: implications for vaccine development. J. Infect. Dis. 174(Suppl. 1):1996;S30-S36
11. Gerna G., Sarasini A., Parea M., Arista S., Miranda P., Brussow H., Hoshino Y., Flores J. Isolation and characterization of two distinct human rotavirus strains with G6 specificity. J. Clin. Microbiol. 30:1992;9-16
12. Gerna G., Steele A.D., Hoshino Y., Sereno M., Garcia D., Sarasini A., Flores J. A comparison of the VP7 gene sequences of human and bovine rotaviruses. J. Gen. Virol. 75:1994;1781-1784
13. Gorziglia M., Nishikawa K., Fukuhara N. Evidence of duplication and deletion in super short segment 11 of rabbit rotavirus Alabama strain. Virology. 170:1989;587-590
14. Green K.Y., Hoshino Y., Ikegami N. Sequence analysis of the gene encoding the serotype-specific glycoprotein (VP7) of two new human rotavirus serotypes. Virology. 168:1989;429-433
15. Griffin D.D., Nakagomi T., Hoshino Y., Nakagomi O., Kirkwood C.D., Parashar U.D., Glass R.I., Gentsch J.R. Characterization of nontypeable rotavirus strains from the United States: identification of a new rotavirus reassortant (P2A[6], G12) and rare P3[9] strains related to bovine rotaviruses. Virology. 294:2002;256-269
16. Herring A.J., Inglis N.F., Ojeh C.K., Snodgrass D.R., Menzies J.D. Rapid diagnosis of rotavirus infection by direct detection of viral nucleic acid in silver-stained polyacrylamide gels. J. Clin. Microbiol. 16:1982;473-477
17. Holmes J.L., Kirkwood C.D., Gerna G., Clemens J.D., Rao M.R., Naficy A.B., Abu-Elyazeed R., Savarino S.J., Glass R.I., Gentsch J.R. Characterization of unusual G8 rotavirus strains isolated from Egyptian children. Arch. Virol. 144:1999;1381-1396
18. Hoshino Y., Wyatt R.G., Greenberg H.B., Flores J., Kapikian A.Z. Serotypic similarity and diversity of rotaviruses of mammalian and avian origin as studied by plaque-reduction neutralization. J. Infect. Dis. 149:1984;694-702
19. Iturriza-Gomara M., Anderton E., Kang G., Gallimore C., Phillips W., Desselberger U., Gray J. Evidence for genetic linkage between the gene segments encoding NSP4 and VP6 proteins in common and reassortant human rotavirus strains. J. Clin. Microbiol. 41:2003;3566-3573
20. Kang G., Green J., Gallimore C.I., Brown D.W. Molecular epidemiology of rotaviral infection in South Indian children with acute diarrhea from 1995-1996 to 1998-1999. J. Med. Virol. 67:2002;101-105
21. Kapikian A.Z., Hoshino Y., Chanock R.M., Perez-Schael I. Efficacy of a quadrivalent rhesus rotavirus-based human rotavirus vaccine aimed at preventing severe rotavirus diarrhea in infants and young children. J. Infect. Dis. 174:1996;65-72
22. Kumar S., Tamura K., Jakobsen I.B., Nei M. MEGA2: molecular evolutionary genetics analysis software. Bioinformatics. 17:2001;1244-1245
23. Li B., Clark H.F., Gouvea V. Amino acid sequence similarity of the VP7 protein of human rotavirus HCR3 to that of canine and feline rotaviruses. J. Gen. Virol. 75:1994;215-219
24. Liprandi F., Gerder M., Bastidas Z., Lopez J.A., Pujol F.H., Ludert J.E., Joelsson D.B., Ciarlet M.A. Novel type of VP4 carried by a porcine rotavirus strain. Virology. 315:2003;373-380
25. Martella V., Ciarlet M., Camarda A., Pratelli A., Tempesta M., Greco G., Cavalli A., Elia G., Decaro N., Terio V., Bozzo G., Camero M., Buonavoglia C. Molecular characterization of the VP4, VP6, VP7, and NSP4 genes of lapine rotaviruses identified in Italy: emergence of a novel VP4 genotype. Virology. 314:2003;358-370
26. Mphahlele M.J., Steele A.D. Relative frequency of human rotavirus VP4 (P) genotypes recovered over a ten-year period from South African children with diarrhea. J. Med. Virol. 47:1995;1-5
27. Nakagomi T., Nakagomi O. Human rotavirus HCR3 possesses a genomic RNA constellation indistinguishable from that of feline and canine rotaviruses. Arch. Virol. 145:2000;2403-2409
28. Nakagomi O., Mochizuki M., Aboudy Y., Shif I., Silberstein I., Nakagomi T. Hemagglutination by a human rotavirus isolate as evidence for transmission of animal rotaviruses to humans. J. Clin. Microbiol. 30:1992;1011-1013
29. Nakagomi T., Tsunemitsu H., Imagawa H., Nakagomi O. Genomic RNA constellation of recently emerging serotype G14 equine rotavirus strains in Japan that is highly homologous with prototype G3 and G14 strains previously identified in the United States of America. Arch. Virol. 148:2003;925-935
30. Nicholas K.B., Nicholas H.B., Deerfield D.W. GeneDoc: analysis and visualization of genetic variation. Embnet News. 4:1997;14
31. Okada J., Urasawa T., Kobayashi N., Taniguchi K., Hasegawa A., Mise K., Urasawa S. New P serotype of group A human rotavirus closely related to that of a porcine rotavirus. J. Med. Virol. 60:2000;63-69
32. Palombo E.A. Genetic analysis of Group A rotaviruses: evidence for interspecies transmission of rotavirus genes. Virus Genes. 24:2002;11-20
33. Palombo E.A., Bishop R.F. Genetic and antigenic characterization of a serotype G6 human rotavirus isolated in Melbourne, Australia. J. Med. Virol. 47:1995;348-354
34. Parashar U.D., Hummelman E.G., Bresee J.S., Miller M.A., Glass R.I. Global illness and deaths caused by rotavirus disease in children. Emerging Infect. Dis. 9:2003;565-572
35. Rao C.D., Gowda K., Reddy B.S. Sequence analysis of VP4 and VP7 genes of nontypeable strains identifies a new pair of outer capsid proteins representing novel P and G genotypes in bovine rotaviruses. Virology. 276:2000;104-113
36. Santos N., Volotao E.M., Soares C.C., Albuquerque M.C., da Silva F.M., de Carvalho T.R., Pereira C.F., Chizhikov V., Hoshino Y. Rotavirus strains bearing genotype G9 or P[9] recovered from Brazilian children with diarrhea from 1997 to 1999. J. Clin. Microbiol. 39:2001;1157-1160
37. Sato K., Inaba Y., Miura Y., Tokuhisa S., Matumoto M. Isolation of lapine rotavirus in cell cultures. Arch. Virol. 71:1982;267-271
38. Sereno M.M., Gorziglia M.I. The outer capsid protein VP4 of murine rotavirus strain Eb represents a tentative new P type. Virology. 199:1994;500-504
39. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24:1997;4876-4882
40. Thouless M.E., DiGiacomo R.F., Neuman D.S. Isolation of two lapine rotaviruses: characterization of their subgroup, serotype and RNA electropherotypes. Arch. Virol. 89:1986;161-170
41. Urasawa T., Taniguchi K., Kobayashi N., Mise K., Hasegawa A., Yamazi Y., Urasawa S. Nucleotide sequence of VP4 and VP7 genes of a unique human rotavirus strain Mc35 with subgroup I and serotype 10 specificity. Virology. 195:1993;766-771
42. Wen L., Nakayama M., Yamanishi Y., Nishio O., Fang Z.Y., Nakagomi O., Araki K., Nishimura S., Hasegawa A., Muller W.E., Ushijima H. Genetic variation in the VP7 gene of human rotavirus serotype 3 (G3 type) isolated in China and Japan. Arch. Virol. 142:1997;1481-1489