Comparative radiation hybrid map of canine chromosome 1 incorporating SNP and indel polymorphisms

Genomics

Volumn 84, Issue 2, 2004, Pages 248-264

  Housley, Donna J E ^a   Ritzert, Elizabeth ^a   Venta, Patrick J ^a  

^a MICHIGAN STATE UNIVERSITY   (United States)

Author keywords

Chromosome mapping; Chromosomes, mammalian; DNA; Dogs; Evolution, molecular; Gene order; Genetic markers; Genome; Polymorphism, single nucleotide; Sequence analysis; Sequence tagged sites

Indexed keywords

ARTICLE; CHROMOSOME 1; EVOLUTIONARY HOMOLOGY; GENE INSERTION; GENE MAPPING; GENE SEQUENCE; MAMMAL; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RADIATION HYBRID MAPPING; SINGLE NUCLEOTIDE POLYMORPHISM; TANDEM REPEAT; UNINDEXED SEQUENCE;

ANIMALS; CHROMOSOMES, HUMAN; CHROMOSOMES, MAMMALIAN; DOGS; HUMANS; MOLECULAR SEQUENCE DATA; POLYMORPHISM, SINGLE NUCLEOTIDE; RADIATION HYBRID MAPPING; SHORT INTERSPERSED NUCLEOTIDE ELEMENTS; SPECIES SPECIFICITY;

CANIS FAMILIARIS; INSERTION SEQUENCES; MAMMALIA;

EID: 3042604501     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ygeno.2004.04.001     Document Type: Article

References (35)

1. Calvert C.A., Hall G., Jacobs G., Pickus C. Clinical and pathologic findings in Doberman pinschers with occult cardiomyopathy that died suddenly or developed congestive heart failure: 54 cases (1984-1991). J. Am. Vet. Med. Assoc. 210:1997;505-511
2. Padgett G.A., Mostosky U.V. The mode of inheritance of craniomandibular osteopathy in West Highland White terrier dogs. Am. J. Med. Genet. 25:1986;9-13
3. Messina D.N., Speer M.C., Pericak-Vance M.A., McNally E.M. Linkage of familial dilated cardiomyopathy with conduction defect and muscular dystrophy to chromosome 6q23. Am. J. Hum. Genet. 61:1997;909-917
4. Brouillette J.A., Andrew J.R., Venta P.J. Estimate of nucleotide diversity in dogs with a pool-and-sequence method. Mamm. Genome. 11:2000;1079-1086
5. Lingaas F., et al. A canine linkage map: 39 linkage groups. J. Anim. Breeding Genet. 118:2001;3-19
6. Guyon R., et al. A 1-Mb resolution radiation hybrid map of the canine genome. Proc. Natl. Acad. Sci. USA. 100:2003;5296-5301
7. Mellersh C.S., et al. An integrated linkage-radiation hybrid map of the canine genome. Mamm. Genome. 11:2000;120-130
8. Priat C., et al. A whole-genome radiation hybrid map of the dog genome. Genomics. 54:1998;361-378
9. Sidjanin D.J., et al. Canine CNGB3 mutations establish cone degeneration as orthologous to the human achromatopsia locus ACHM3. Hum. Mol. Genet. 11:2002;1823-1833
10. Sargan D.R., et al. Use of flow-sorted canine chromosomes in the assignment of canine linkage, radiation hybrid, and syntenic groups to chromosomes: refinement and verification of the comparative chromosome map for dog and human. Genomics. 69:2000;182-195
11. Roberts M.C., et al. Characterization and radiation hybrid mapping of expressed sequence tags from the canine brain. Mamm. Genome. 14:2003;203-213
12. Hoffman S.M., Fernandez-Salguero P., Gonzalez F.J., Mohrenweiser H.W. Organization and evolution of the cytochrome P450 CYP2A-2B-2F subfamily gene cluster on human chromosome 19. J. Mol. Evol. 41:1995;894-900
13. Kirkness E.F., et al. The dog genome: survey sequencing and comparative analysis. Science. 301:2003;1898-1903
14. Sachidanandam R., et al. A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature. 409:2001;928-933
15. Breen M., et al. Chromosome-specific single-locus FISH probes allow anchorage of an 1800-marker integrated radiation-hybrid/linkage map of the domestic dog genome to all chromosomes. Genome Res. 11:2001;1784-1795
16. Brouillette J.A., Venta P.J. Within-breed heterozygosity of canine single nucleotide polymorphisms identified by across-breed comparison. Anim. Genet. 33:2002;464-467
17. Wright S. The genetical structure of populations. Ann. Eugen. 15:1951;323-354
18. Batzer M.A., et al. Dispersion and insertion polymorphism in two small subfamilies of recently amplified human Alu repeats. J. Mol. Biol. 247:1995;418-427
19. Salem A.H., Kilroy G.E., Watkins W.S., Jorde L.B., Batzer M.A. Recently integrated Alu elements and human genomic diversity. Mol. Biol. Evol. 20:2003;1349-1361
20. Batzer M.A., et al. African origin of human-specific polymorphic Alu insertions. Proc. Natl. Acad. Sci. USA. 91:1994;12288-12292
21. Hamdi H., Nishio H., Zielinski R., Dugaiczyk A. Origin and phylogenetic distribution of Alu DNA repeats: irreversible events in the evolution of primates. J. Mol. Biol. 289:1999;861-871
22. Deininger P.L., Batzer M.A. Alu repeats and human disease. Mol. Genet. Metab. 67:1999;183-193
23. Lin L., et al. The sleep disorder canine narcolepsy is caused by a mutation in the hypocretin (orexin) receptor 2 gene. Cell. 98:1999;365-376
24. Matise T.C., et al. Systematic evaluation of map quality: human chromosome 22. Am. J. Hum. Genet. 70:2002;1398-1410
25. Langford C.F., Fischer P.E., Binns M.M., Holmes N.G., Carter N.P. Chromosome-specific paints from a high-resolution flow karyotype of the dog. Chromosome Res. 4:1996;115-123
26. Lercher M.J., Hurst L.D. Human SNP variability and mutation rate are higher in regions of high recombination. Trends Genet. 18:2002;337-340
27. Krajinovic M., et al. Linkage of familial dilated cardiomyopathy to chromosome 9. Heart Muscle Disease Study Group. Am. J. Hum. Genet. 57:1995;846-852
28. Venta P.J., Brouillette J.A., Yuzbasiyan-Gurkan V., Brewer G.J. Gene-specific universal mammalian sequence-tagged sites: application to the canine genome. Biochem. Genet. 34:1996;321-341
29. Shubitowski D.M., Venta P.J., Douglass C.L., Zhou R.X., Ewart S.L. Polymorphism identification within 50 equine gene-specific sequence tagged sites. Anim. Genet. 32:2001;78-88
30. Lunetta K.L., Boehnke M., Lange K., Cox D.R. Selected locus and multiple panel models for radiation hybrid mapping. Am. J. Hum. Genet. 59:1996;717-725
31. Kent W.J., et al. The Human Genome Browser at UCSC. Genome Res. 12:2002;996-1006
32. Nei M., Li W.H. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. USA. 76:1979;5269-5273
33. Francisco L.V., Langston A.A., Mellersh C.S., Neal C.L., Ostrander E.A. A class of highly polymorphic tetranucleotide repeats for canine genetic mapping. Mamm. Genome. 7:1996;359-362
34. Venta P.J., Cao Y. A PCR-RSP Csp61 site in the canine DLA-DQA1 gene. Anim. Genet. 30:1999;67
35. Venta P.J., Cao Y. AIRS-PCR for the canine DLA-DQA1 F141L polymorphism. Anim. Genet. 29:1998;475