Development of sequence-characterized amplified region (SCAR) markers for resistance gene Pc94 to crown rust in oat

Canadian Journal of Plant Pathology

Volumn 26, Issue 1, 2004, Pages 89-96

  Chong, J ^a   Reimer, E ^a   Somers, D ^a   Aung, T ^a   Penner, G A ^a  

^a Cereal Research Centre   (Canada)

Author keywords

Amplified fragment length polymorphism; DNA markers; Oat crown rust; Resistance gene; Sequence characterized amplified region

Indexed keywords

AVENA; AVENA SATIVA; AVENA STRIGOSA; FUNGI; PUCCINIA; PUCCINIA CORONATA; PUCCINIA CORONATA F. SP. AVENAE;

EID: 3042571555     PISSN: 07060661     EISSN: 17152992     Source Type: Journal    
DOI: 10.1080/07060660409507118     Document Type: Article

References (36)

1. Aung, T., Chong, J., and Leggett, M., The transfer of crown rust resistance Pc94 from a wild diploid to cultivated hexaploid oat. Proceedings of the 9th European and Mediterranean Cereal Rusts and Powdery Mildews Conference. Sept.2-61996, Lunteren, Netherlands. Edited by:Kema, G. H. J., Niks, R. E., and Daamen, R. A., pp. 167–171. Wageningen, Netherlands:European and Mediterranean Cereal Rust Foundation.
2. Browning, J. A., Simons, M. D., Frey, K. J., and Murphy, H. C., 1969. Regional deployment for conservation of oat crown rust resistance genes. Iowa Agric. Home Econ. Exp. Stn. Spec. Rep., 64:49–56.
3. Bush, A. L., and Wise, R. P., 1998. High-resolution mapping adjacent to the Pc71 crown-rust resistance locus in hexaploid oat. Mol. Breed., 4:13–21.
4. Chen, G., Portyanko, V. A., Rines, H. W., Phillips, R. L., Leonard, K. J., Ochocki, G. E., and Stuthman, D. D., Quantitative trait loci (QTLs) for partial resistance to crown rust in oats. Proceedings. 6th International Oat Conference, Lincoln University. Nov.13–162000, Lincoln, New Zealand. Edited by:Cross, R. J., pp. 129–132. Christchurch, New Zealand:New Zealand Institute for Crop and Food Research Limited.
5. Cho, Y. G., Blair, M. W., Panaud, O., and McCouch, S. R., 1996. Cloning and mapping of variety specific rice genomic DNA sequences:amplified fragment length polymorphisms (AFLPs) from silver-stained polyacrylamide gels. Genome, 39:373–378.
6. Chong, J., 2000a. Incidence and virulence of Puccinia coronata f. sp. avenae in Canada from 1996 to 1998. Can. J. Plant Pathol., 22:99–109.
7. Chong, J., 2000b. Inheritance of resistance to two Puccinia coronata isolates in a partial resistant oat line MN841801. Acta Phytopathol. Entomol. Hung., 35:37–40.
8. Chong, J., and Aung, T., Interaction of the crown rust resistance gene Pc94 with several Pc genes. Proceedings. 9th European and Mediterranean Cereal Rusts and Powdery Mildews Conference. Sept.2–61996, Lunteren, Netherlands. Edited by:Kema, G. H. J., Niks, R. E., and Daamen, R. A., pp. 172–173. Wageningen, Netherlands:European and Mediterranean Cereal Rust Foundation.
9. Chong, J., and Brown, P. D., 1996. Genetics of resistance to Puccinia coronata f. sp. avenae in two Avena sativa accessions. Can. J. Plant Pathol., 18:286–292.
10. Chong, J., and Kolmer, J. A., 1993. Virulence dynamics and phenotypic diversity of Puccinia coronata f. sp. avenae in Canada from 1974 to 1990. Can. J. Bot., 71:248–255.
11. Chong, J., Leonard, K. J., and Salmeron, J. J., 2000. A North American system of nomenclature for Puccinia coronata f. sp. avenae. Plant Dis., 84:580–585.
12. De Koeyer, D., Orr, W., Lybaert, A., Deyl, J., Chenier, C., Tinker, N., McElroy, A., Chong, J., and Molnar, S., SCAR markers linked to the Pc68 resistance allele are an effective tool for selection. Proceedings. 6th International Oat Conference, Lincoln University. Nov.13–162000, Lincoln, New Zealand. Edited by:Cross, R. J., pp. 138–141. Christchurch, New Zealand:New Zealand Institute for Crop and Food Research Limited.
13. Fleischmann, G., and McKenzie, R. I. H., 1965. Yield losses in Garry oats infected with crown rust. Phytopathology, 55:767–770.
14. Frey, K. J., Browning, J. A., and Simons, M. D., 1980. Management systems for host genes to control disease loss. Indian J. Genet. Plant Breed., 39:10–21.
15. Hartl, L., Mohler, V., Zeller, F. J., Hsam, S. L. K., and Schweizer, G., 1999. Identification of AFLP markers closely linked to the powdery mildew resistance genes Pm1c and Pm4a in common wheat (Triticum aestivum L.). Genome, 42:322–329.
16. Knox, R. E., Menzies, J. G., Howes, N. K., Clarke, J. M., Aung, T., and Penner, G. A., 2002. Genetic analysis of resistance to loose smut and an associated DNA marker in durum wheat doubled haploids. Can. J. Plant Pathol., 24:316–322.
17. Lander, E. S., Green, P., Abrahamson, J., Barlow, A., Daly, M. J., Lincoln, S. E., and Newburg, L., 1987. Mapmaker:an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics, 1:174–181.
18. Leonard, K. J., 2002. Oat lines with effective adult plant resistance to crown rust. Plant Dis., 86:593–598.
19. Meksem, K., Leister, D., Peleman, J., Zabeau, M., Salamini, F., and Gebhardt, C., 1995. A high-resolution map of the vicinity of the RI locus on chromosome V of potato based on RFLP and AFLP markers. Mol. Gen. Genet., 249:74–81.
20. Murphy, H. C., 1935. Physiologic specialization in Puccinia coronata avenae. U.S. Dep. Agric. Bull., 433:1–48.
21. O'Donoughue, L. S., Souza, E., Tanksley, S. D., and Sorrells, M. E., 1994. Relationships among North American oat cultivars based on restriction fragment length polymorphisms. Crop Sci., 34:1251–1258.
22. O'Donoughue, L. S., Chong, J., Wight, C. P., Fedak, G., and Molnar, S. J., 1996. Localization of stem rust resistance genes and associated molecular markers in cultivated oat. Phytopathology, 86:719–727.
23. Paran, I., and Michelmore, R. W., 1993. Development of reliable PCR-based markers linked to downy mildew resistance genes in lettuce. Theor. Appl. Genet., 85:985–993.
24. Pedersen, W. L., and Leath, S., 1988. Pyramiding major genes for resistance to maintain residual effects. Annu. Rev. Phytopathol., 26:496–500.
25. Penner, G. A., Chong, J., Lévesque-Lemay, M., Molnar, S. J., and Fedak, G., 1993a. Identification of a RAPD marker linked to the stem rust gene Pg3. Theor. Appl. Genet., 85:702–705.
26. Penner, G. A., Chong, J., Wight, C. P., Molnar, S. J., and Fedak, G., 1993b. Identification of an RAPD marker for the crown rust resistance gene Pc68 in oats. Genome, 36:818–820.
27. Penner, G. A., Bush, A., Wise, R., Kim, W., Domier, L., Kasha, K., Laroche, A., Scoles, G., Molnar, S., and Fedak, G., 1993c. Reproducibility of random amplified polymorphic DNA (RAPD) analysis among laboratories. PCR Methods Appl., 2:341–345.
28. Portyanko, V. A., Chen, G., Rines, H. W., Phillips, R. L., Leonard, K. J., Ochocki, G. E., and Stuthman, D. D., Genetic basis of partial resistance to crown rust in cultivated oat 'MN841801-1' [online]. Proceedings. Plant and Animal Genome IX Conference. Jan.13–172001, San Diego, Calif. Available at http://www.intl-pag.org/pag/9/abstracts/P5c_43.html [accessed 8 Jan. 2004].
29. Qu, L.-J., Foote, T. N., Roberts, M. A., Money, T. A., Aragon-Alcaide, L., Snape, J. W., and Moore, G., 1998. A simple PCR-based method for scoring the ph1b deletion in wheat. Theor. Appl. Genet., 96:371–375.
30. Richter, K., Schondelmaier, J., and Jung, C., 1998. Mapping of quantitative trait loci affecting Drechslera teres resistance in barley with molecular markers. Theor. Appl. Genet., 97:1225–1234.
31. Rooney, W. L., Rines, H. W., and Phillips, R. L., 1994. Identification of RFLP markers linked to crown rust resistance genes Pc91 and Pc92 in oat. Crop Sci., 34:940–944.
32. Shan, X., Blake, T. K., and Talbert, L. E., 1999. Conversion of AFLP markers to sequence-specific PCR markers in barley and wheat. Theor. Appl. Genet., 98:1072–1078.
33. Simons, M. D., 1985. “ Crown rust ”. In The cereal rusts, Edited by:Bushnell, W. R., and Roelfs, A. P., Vol. II, 131–172. New York:Academic Press.
34. Spielmeyer, W., Green, A. G., Bittisnich, D., Mendham, N., and Lagudah, E. S., 1998. Identification of quantitative trait loci contributing to Fusarium wilt resistance on an AFLP linkage map of flax (Linum usitatissimum). Theor. Appl. Genet., 97:633–641.
35. Toojinda, T., Baird, E., Booth, A., Broers, L., Hayes, P., Powell, W., Thomas, W., Vivar, H., and Young, G., 1998. Introgression of quantitative trait loci (QTLs) determining stripe rust resistance in barley:an example of marker-assisted line development. Theor. Appl. Genet., 96:123–131.
36. Vos, P., Hogers, R., Bleeker, M., Reijans, M., Van de Lee, T., Hornes, M., Frijters, A., Peleman, J., Kuiper, M., and Zabeau, M., 1995. AFLP:a new technique for DNA fingerprinting. Nucleic Acids Res., 23:4407–4414.