Confirmation of the synonymy of Paratrichodorus christiei (Allen, 1957) Siddiqi, 1974 with P. minor (Colbran, 1956) Siddiqi, 1974 (Nematoda: Triplonchida) based on sequence data obtained for the ribosomal DNA 18S gene

Nematology

Volumn 6, Issue 1, 2004, Pages 145-151

  Boutsika, Konstantina ^a   Blok, Vivian C ^b   Phillips, Mark S ^b   Lewis, Steve A ^c   Robbins, Robert T ^d   Ferraz, Luiz C C B ^e   Brown, Derek J F ^f  

^a FRIEDRICH MIESCHER INSTITUTE FOR BIOMEDICAL RESEARCH   (Switzerland)

^b SCOTTISH CROP RESEARCH INSTITUTE   (United Kingdom)

^c CLEMSON UNIVERSITY   (United States)

^d UNIVERSITY OF ARKANSAS   (United States)

^e UNIVERSITY OF SÃO PAULO   (Brazil)

^f INSTITUTE OF BIODIVERSITY AND ECOSYSTEM RESEARCH   (Bulgaria)

Author keywords

18S sequence; ITS; Pepper ringspot virus; Prismatolaimus intermedius; rDNA; Tobacco rattle virus

Indexed keywords

NEMATODE; PHYLOGENETICS;

ACTINIARIA; ANEMONE; INVERTEBRATA; NEMATODA; NICOTIANA TABACUM; PARATRICHODORUS; PARATRICHODORUS ANEMONES; PARATRICHODORUS MINOR; PARATRICHODORUS PACHYDERMUS; PEPPER RINGSPOT VIRUS; PRISMATOLAIMUS; PRISMATOLAIMUS INTERMEDIUS; TOBACCO RATTLE VIRUS; TRIPLONCHIDA;

EID: 3042570095     PISSN: 13885545     EISSN: None     Source Type: Journal    
DOI: 10.1163/156854104323073017     Document Type: Article

References (34)

1. ALESHIN, V.V., KEDROVA, O.S., MILYUTINA, I.A., VLADY-CHENSKAYA, N.S. & PETROV, N.B. (1998). Relationships among nematodes based on the analysis of 18S rRNA gene sequences: molecular evidence for monophyly of chromadorian and secernentian nematodes. Russian Journal of Nematology 6, 175-184.
2. ALLEN, M.W. (1957a). A review of the nematode genus Trichodorus with descriptions of ten new species. Nematologica 2, 32-62.
3. ALLEN, M.W. (1957b). Supplement: Dorylaimoidea described since the monographs on Dorylaims and Dorylaimoidea were published in 1936 and 1939. In: Thorne, G. A monograph of the nematodes of the superfamily Dorylaimoidea, 2nd edition. Capita Zoologica 8, pp. 262-263.
4. ALLEN, M.W. (1960). The genera Xiphinema, Longidorus and Trichodorus. In: Sasser, J.N. & Jenkins, W.R. (Eds). Nematology. Fundamentals and recent advances with emphasis on plant parasitic and soil forms. Chapel Hill, USA, The University of North Carolina Press, pp. 227-228.
5. ALTSCHUL, S.F., GISH, W., MILLER, W., MYERS, E.W. & LIPMAN, D.J. (1990). Basic local alignment search tool. Journal of Molecular Biology 215, 403-410.
6. BLAXTER, M.L., DE LEY, P., GAREY, J.R., LIU, L.X., SCHELDEMAN, P., VIERSTRAETE, A., VANFLETEREN, J.R., MACKEY, L.Y., DORRIS, M., FRISSE, L.M., VIDA, J.T. & THOMAS, W.K. (1998). A molecular evolutionary framework for the phylum Nematoda. Nature 392, 71-75.
7. CHRISTIE, J.R. & PERRY, V.G. (1951). A root disease of plants caused by a nematode of the genus Trichodorus. Science 113, 491-493.
8. COLBRAN, R.C. (1956). Studies of plant and soil nematodes. Two new species from Queensland. Queensland Journal of Agricultural Science 13, 123-126.
9. DECRAEMER, W. (1995). The family Trichodoridae: stubby root and virus vector nematodes. Dordrecht, Boston & London, Kluwer Academic Publishers, 360 pp.
10. DEVERBAUX, J.R., HAEBERLI, P. & SMITHIES, O. (1984). A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Research 12, 387-395.
11. ESSER, R.P. (1990). Bureau of Nematology. Tri-ology 29, 1.
12. EVANS, K., TRUDGILL, D.L. & WEBSTER, J.M. (1993). Plant parasitic nematodes in temperate agriculture. Wallingford, UK, CABI Publishing, 648 pp.
13. FELSENSTEIN, J. (1985). Confidence limits on phytogenies: an approach using the bootstrap. Evolution 39, 783-791.
14. FELSENSTEIN, J. (1993). Estimating effective population size from samples of sequences: inefficiency of pairwise and segregating sites as compared to phylogenetic estimates. Genetical Research 59, 139-147.
15. HEYNS, J. (1975). Paratrichodorus christiei. CIH Descriptions of Plant-Parasitic Nematodes 5, No. 69, 4 pp.
16. HOOPER, D.J. (1962). Three new species of Trichodorus (Nematoda: Dorylaimoidea) and observations on T. minor Colbran, 1956. Nematologica 7, 273-280.
17. HOOPER, D.J. (1977). Paratrichodorus (Nanidorus) minor. CIH Descriptions of Plant-Parasitic Nematodes 7, No. 103, 3 pp.
18. HUNT, D.J. (1993). Aphelenchida, Longidoridae and Trichodoridae: their systematics and bionomics. Wallingford, UK, CABI Publishing, 352 pp.
19. JAIRAJPURI, M.S. & AHMAD, W. (1992). Dorylaimida. Free-living, predaceous and plant-parasitic nematodes. New Delhi, India & Oxford, UK. IBH Publishing Co., 458 pp.
20. KAMPFER, S., STURMBAUER, C. & OTT, J. (1998). Phylogenetic analysis of rDNA sequences from adenophorean nematodes and implications for the Adenophorea-Secernentea controversy. Invertebrate Biology 117, 29-36.
21. LOOP, P.A.A. (1975). Taxonomy of Trichodoridae. In: Lamberti, F., Taylor, C.E. & Seinhorst, J.W. (Eds). Nematode vectors of plant viruses. London & New York, Plenum Press, pp. 103-127.
22. PAGE, R.D.M. (1996). TREEVIEW: An application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences 12, 357-358.
23. PERRY, R.N. & JONES, J.T. (1998). The use of molecular biology techniques in plant nematology. Russian Journal of Nematology 6, 47-56.
24. RHOADES, H.L. (1985). Comparison of fenamiphos and Arthrobotrys amerospora for controlling plant nematodes in central Florida. Nematropica 15, 1-7.
25. SIDDIQI, M.R. (1962). Trichodorus pakistanensis n. sp. (Nematoda: Trichodoridae) with observations on T. porosus Allen, 1957, T. mirzai Siddiqi, 1960 and T. minor Colbran, 1956 from India. Nematologica 8, 193-200.
26. SIDDIQI, M.R. (1974). Systematics of the genus Trichodorus Cobb, 1913 (Nematoda: Dorylaimida), with descriptions of three new species. Nematologica 19, 259-278.
27. STANTON, J.M., MCNICOL, C.D. & STEELE, V. (1998). Non-manual lysis of second-stage Meloidogyne juveniles for identification of pure and mixed samples based on the polymerase chain reaction. Australasian Plant Pathology 27, 112-115.
28. STRIMMER, K. & VON HAESELER, A. (1996). Quartet puzzling: a quartet maximum likelihood method for reconstructing tree topologies. Molecular Biology and Evolution 13, 964-969.
29. TAYLOR, C.E. & BROWN, D.J.F. (1997). Nematode vectors of plant viruses. Wallingford, UK, CABI Publishing, 286 pp.
30. THOMPSON, J.D., HIGGINS, D.G. & GIBSON, T.J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22, 4673-4680.
31. THORNE, G. & SWANGER, H.H. (1936). A monograph of the nematode genera Dorylaimus Dujardin, Aporcelaimus n.g., Dorylaimoides n.g. and Pungentus n.g. Capita Zoologica 6, 1-223.
32. VRAIN, T.C., WAKARCHUK, D.A., LEVESQUE, A.C. & HAMILTON R.I. (1992). Intraspecific rDNA restriction fragment length polymorphism in the Xiphinema americanum group. Fundamental and Applied Nematology 15, 563-573.
33. WYSS, U. (1970). Zur Bestimmung von Trichodorus-Arten. Pflanzenkrankheiten und Pflanzenschutz 77, 506-514.
34. YANG, Z.H. (1996). Among-site rate variation and its impact on phylogenetic analyses. Trends in Ecology and Evolution 11, 367-372.