A comparison of five methods for selecting tagging single-nucleotide polymorphisms

BMC Genetics

Volumn 6, Issue SUPPL.1, 2005, Pages

  Burkett, Kelly M ^a   Ghadessi, Mercedeh ^b   McNeney, Brad ^b   Graham, Jinko ^b   Daley, Denise ^a,c  

^a UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^b SIMON FRASER UNIVERSITY   (Canada)

^c CASE WESTERN RESERVE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALLELE; ARTICLE; CASE CONTROL STUDY; CONTROLLED STUDY; DISEASE ASSOCIATION; GENE LINKAGE DISEQUILIBRIUM; GENETIC ALGORITHM; GENETIC ANALYSIS; GENETIC ASSOCIATION; HAPLOTYPE; HUMAN; INTERMETHOD COMPARISON; SIMULATION; SINGLE NUCLEOTIDE POLYMORPHISM; WORKSHOP; COMPARATIVE STUDY; GENETIC PROCEDURES; GENETICS; REPRODUCIBILITY;

GENETIC TECHNIQUES; HUMANS; POLYMORPHISM, SINGLE NUCLEOTIDE; REPRODUCIBILITY OF RESULTS;

EID: 30344441392     PISSN: None     EISSN: 14712156     Source Type: Journal    
DOI: 10.1186/1471-2156-6-S1-S71     Document Type: Article

References (5)

1. Stram DO, Haiman CA, Hirschhorn JN, Altshuler D, Kolonel LN, Henderson BE, Pike MC: Choosing haplotype-tagging SNPs based on unphased genotype data using a preliminary sample of unrelated subjects with an example from the Multiethnic Cohort Study. Hum Hered 2003, 55:27-36.
2. Chapman JM, Cooper JD, Todd JA, Clayton DG: Detecting disease associations due to linkage disequilibrium using haplotype tags: A class of tests and the determinants of statistical power. Hum Hered 2003, 56:18-31.
3. Cousin E, Genin E, Mace S, Ricard S, Chansac C, del Zompo M, Deleuze JF: Association studies in candidate genes: Strategies to select SNPs to be tested. Hum Hered 2003, 56:151-159.
4. Zhai W, Todd MJ, Nielsen R: Is haplotype block identification useful for association mapping studies? Genet Epidemiol 2004, 27:80-83.
5. Zhang K, Deng M, Chen T, Waterman MS, Sun F: A dynamic programming algorithm for haplotype block partitioning. Proc Natl Acad Sci USA 2002, 99:7335-7339.