Detection of Microcystis in lake sediment using molecular genetic techniques

World Journal of Microbiology and Biotechnology

Volumn 21, Issue 8-9, 2005, Pages 1559-1568

  Innok, Sasidhorn ^a   Matsumura, Masatoshi ^b   Boonkerd, Nantakorn ^a   Teaumroong, Neung ^a  

^a SURANAREE UNIVERSITY OF TECHNOLOGY   (Thailand)

^b UNIVERSITY OF TSUKUBA   (Japan)

Author keywords

Denaturing gradient gel electrophoresis (DGGE); DNA dependent RNA polymerase (rpoC1); Microcystis viridis; rRNA intergenic spacer analysis (RISA); Terminal restriction fragment length polymorphism (T RFLP)

Indexed keywords

DNA; GENETIC ENGINEERING; LAKES; SEDIMENTS; ULTRASONICS;

DENATURING GRADIENT GEL ELECTROPHORESIS (DGGE); DNA DEPENDENT RNA POLYMERASE; MICROCYSTIS VIRIDIS; RRNA INTERGENIC SPACER ANALYSIS (RISA); TERMINAL RESTRICTION FRAGMENT LENGTH POLYMORPHISM (T-RFLP);

MICROORGANISMS;

CYANOBACTERIA; MICROCYSTIS; MICROCYSTIS SP.; MICROCYSTIS VIRIDIS;

EID: 30044437841     PISSN: 09593993     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11274-005-7893-y     Document Type: Article

References (26)

1. R.I. Amann W. Ludwig K.-H. Schleifer 1995 Phylogenetic identification and in situ detection of individual microbial cells without cultivation Microbiology and Molecular Biology Reviews 59 143 169
2. J. Borneman E.W. Triplett 1997 Molecular microbial diversity in soils from eastern Amazonia: evidence for unusual microorganisms and population shifts associated with deforestation Applied and Environmental Microbiology 63 2647 2653
3. W.W. Carmicheal 1994 The toxins of cyanobacteria Scientific American 270 78 86
4. J.P. Clapp 1995 The identification of root-associated fungi by polymerase chain reaction-single-strand conformational polymorphism (PCR-SSCP) A.D.L. Akkermans J.D. Van Elsas F.J. De Bruijn Molecular Microbial Ecology Manual, Vol. 3.4.7 Kluwer Academic Publishers Dordrecht, The Netherlands 1 18 ISBN 0792334116
5. V.P. Edgcomb J.H. [tmp] McDonald R. Devereux D.W. Smith 1999 Estimation of bacterial cell numbers in humic acid-rich Salt marsh sediments with probes directed to 16S ribosomal DNA Applied and Environmental Microbiology 65 1516 1526
6. G.E. Fogg W.D.P. Stewart P. Fay A.E. Walsby 1973 The Blue Green Algae Academic Press London and New York 93 128 ISBN 0-12-261650-2
7. Ichimura T. 1979 Isolation and culture methods of freshwater algae. In Methods in Phycological Studies, eds. Nishizawa, K., Chihara, M. pp. 294-305. Kyoritsu-Shuppan, Tokyo
8. M. Kaebernick B.A. Neilan T. Borner E. Dittmann 2000 Light and the transcriptional response of the microcystin biosynthesis gene cluster Applied and Environmental Microbiology 66 3387 3392
9. R. Kurmayer G. Christiansen I Chorus 2003 The abundance of microcystin-producing genotypes correlates positively with colony size in Microcystis and determines its microcystin net production in Lake Wannsee Applied and Environmental Microbiology 69 787 795
10. R. Kurmayer T. Kutzenberger 2003 Application of real-time PCR for quantification of microcystin genotypes in a population of the toxic cyanobacterium Microcystis sp Applied and Environmental Microbiology 69 6723 6730
11. J.G. Martinez S.G. Acinas A.I. Anton F.R. Valera 1999 Use of the 16S-23S ribosomal genes spacer region in studies of prokaryotic diversity Journal of Microbiological Methods 36 55 64
12. F. Martin-Laurent L. Philippot S. Hallet R. Chaussod J.C. Germon G. Soulas G. Catroux 2001 DNA extraction from soils: old bias for new microbial diversity analysis methods Applied and Environmental Microbiology 67 2354 2359
13. K. Nakano T.J. Lee M. Matsumura 2001 In situ algal bloom control by the integration of ultrasonic radiation and jet circulation to flushing Environmental Science and Technology 35 4941 4946
14. B. Palenik R. Haselkorn 1992 Multiple evolutionary origins of prochlorophytes, the chlorophyll-containing prokaryotes Nature 355 265 267
15. L. Ranjard F. Poly J. Combrisson A. Richaume F. Gourbiere J. Thioulouse S. Nazaret 2000a Heterogenous cell density and genetic structure of bacterial pools associated with various soil microenvironments as determined by enumeration and DNA fingerprinting approach (RISA) Microbial Ecology 39 263 272
16. L. Ranjard E. Brothier S. Nazaret 2000b Sequencing bands of ribosomal intergenic spacer analysis fingerprints for characterization and microscale distribution of soil bacterium populations responding to mercury spiking Applied and Environmental Microbiology 66 5334 5339
17. A. Richmond 1986 CRC Handbook of Microalgal Mass Culture CRC Press Inc. Boca Raton, Florida, USA ISBN 0-84933240-0
18. R. Rippka J. Deruelles J.B. Waterbury M. Herdman R.Y. Stainer 1979 Generic assignments, strain histories and properties of pure cultures of cyanobacteria Journal of General Microbiology 111 1 61
19. R. Rippka M. Herdman 1992 Pasteur Culture Collection (PCC) of Cyanobacterial Strains in Axenic Culture Catalogue of strains, Institute Pasteur Paris, France Vol. 1.
20. R.Y. Stanier R. Kunisawa M. Mendel G. Cohen-Bazire 1971 Purification and properties of unicellular blue-green algae (order Chroococcales) Bacteriological Reviews 35 171 205
21. N. Teaumroong S. Innok S. Chunleuchanon N. Boonkerd 2002 Diversity of nitrogen-fixing cyanobacteria under various ecosystems of Thailand: I. Morphology, physiology and genetic diversity World Journal of Microbiology and Biotechnology 18 673 682
22. A. Teske C. Wawer G Muyzer N.B. Ramsing 1996 Distribution of sulfate-reducing bacteria in a stratified Fjord (Mariager Fjord, Denmark) as evaluated by most-probable number counts and denaturing gradient gel electrophoresis of PCR-amplified ribosomal DNA fragment Applied and Environmental Microbiology 62 1405 1415
23. S.M. Tiquia J. Lloyd D.N.A. Herms H.A.J. Hoiting F.C. Michel 2002 Effect of mulching and fertilization on soil nutrients, microbial activity and rhizosphere bacterial community structure determined by analysis of TRFLPs of PCR-amplified 16S rRNA genes Applied Soil Ecology 21 31 48
24. G. Toledo B. Palenik 1997 Synechococcus diversity in the California current as seen by RNA polymerase (rpoC1) gene sequences of isolated strains Applied and Environmental Microbiology 63 4298 4303
25. M. Watanabe 1996 Isolation, cultivation and classification of bloom-forming Microcystis in Japan M.F. Watanabe K.I. Harada W.W. Carmicheal H. Fujiki Toxic Microcystis CRC Press Boca Raton, Fla 13 34 ISBN 0849376939
26. K.M. Wilson M.A. Schembri P.D. Baker C.P. Saint 2000 Molecular characterization of the toxic cyanobacterium Cylindrospermopsis raciborskii and design of a species-specific PCR Applied and Environmental Microbiology 66 332 338