Isolation and characterization of hematopoietic transcription factor complexes by in vivo biotinylation tagging and mass spectrometry

Annals of the New York Academy of Sciences

Volumn 1054, Issue , 2005, Pages 55-67

  Grosveld, Frank ^a   Rodriguez, Patrick ^a   Meier, Natalia ^a   Krpic, Sanja ^a   Pourfarzad, Farzin ^a   Papadopoulos, Petros ^a   Kolodziej, Katarzyna ^a   Patrinos, George P ^a   Hostert, Arnd ^a   Strouboulis, John ^a  

^a ERASMUS MEDICAL CENTER   (Netherlands)

Author keywords

Biotinylation tagging; Erythroid; GATA 1; Hematopoietic transcription; Peptide tags; Tagged transcription factor

Indexed keywords

BACTERIAL ENZYME; BIRA BIOTIN LIGASE; CYCLIN DEPENDENT KINASE 9; GAMMA GLOBIN; LIGASE; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR ETO 2; TRANSCRIPTION FACTOR FOG 1; TRANSCRIPTION FACTOR GATA 1; TRANSCRIPTION FACTOR GFI 1B; TRANSCRIPTION FACTOR LDB 1; TRANSCRIPTION FACTOR LMO4; TRANSCRIPTION FACTOR MECP1; TRANSCRIPTION FACTOR TAL 1; UNCLASSIFIED DRUG;

BIOTINYLATION; CELL DIFFERENTIATION; CELL MATURATION; CELL PROLIFERATION; CHROMATIN ASSEMBLY AND DISASSEMBLY; COMPLEX FORMATION; CONFERENCE PAPER; ERYTHROID CELL; GENE CONTROL; GENE REPRESSION; GENETIC TRANSCRIPTION; GLOBIN GENE; HEMATOPOIESIS; HUMAN; IN VIVO STUDY; ISOLATION PROCEDURE; MASS SPECTROMETRY; NONHUMAN; PROMOTER REGION; PROTEIN EXPRESSION; TECHNOLOGY;

BACTERIA (MICROORGANISMS);

EID: 29744468976     PISSN: 00778923     EISSN: None     Source Type: Book Series    
DOI: 10.1196/annals.1345.008     Document Type: Conference Paper

References (28)

1. CANTOR, A.B. & S.H. ORKIN. 2002. Transcriptional regulation of erythropoiesis: an affair involving multiple partners. Oncogene 21: 3368-3376.
2. AKASHI, K. et al. 2003. Transcriptional accessibility for genes of multiple tissues and hematopoietic lineages is hierarchically controlled during early hematopoiesis. Blood 101: 383-389.
3. FERREIRA, R., K. OHNEDA, M. YAMAMOTO & S. PHILIPSEN. 2005. GATA1 function, a paradigm for transcription factors in hematopoiesis. Mol. Cell. Biol. 25: 1215-1227.
4. SCHATZ, P.J. 1993. Use of peptide libraries to map the substrate specificity of a peptide-modifying enzyme: a 13 residue consensus peptide specifies biotinylation in Escherichia coli. Biotechnology (N Y) 11: 1138-1143.
5. BECKETT, D., E. KOVALEVA & P.J. SCHATZ. 1999. A minimal peptide substrate in biotin holoenzyme synthetase-catalyzed biotinylation. Protein Sci. 8: 921-929.
6. DE BOER, E. et al. 2003. Efficient biotinylation and single-step purification of tagged transcription factors in mammalian cells and transgenic mice. Proc. Natl. Acad. Sci. USA 100: 7480-7585.
7. RODRIGUEZ, P., E. BONTE, J. KRIJGSVELD, et al. 2005. GATA-1 forms distinct activating and repressive complexes in erythroid cells. EMBO J. 24: 2354-2366.
8. WELCH, J.J. et al. 2004. Global regulation of erythroid gene expression by transcription factor GATA-1. Blood 104: 3136-3147.
9. TORIGOI, E., I.M. BENNANI-BAITI, C. ROSEN, et al. 2000. Chip interacts with diverse homeodomain proteins and potentiates bicoid activity in vivo. Proc. Natl. Acad. Sci. USA 97: 2686-2691.
10. RAMAIN, P., R. KHECHUMIAN, K. KHECHUMIAN, et al. 2000. Interactions between chip and the achaete/scute-daughterless heterodimers are required for pannier-driven pro-neural patterning. Mol. Cell 6: 781-790.
11. TOLHUIS, B., R.J. PALSTRA, E. SPLINTER, et al. 2002. Looping and interaction between hypersensitive sites in the active beta-globin locus. Mol. Cell 10: 1453-1465.
12. MUKHOPADHYAY, M., A. TEUFEL, T. YAMASHITA, et al. 2003. Functional ablation of the mouse Ldb1 gene results in severe patterning defects during gastrulation. Development 130: 495-505.
13. WARREN, A.J., W.H. COLLEDGE, M.B. CARLTON, et al. 1994. The oncogenic cysteine-rich LIM domain protein rbtn2 is essential for erythroid development. Cell 78: 45-57.
14. ROBB, L., I. LYONS, R. LI, et al. 1995. Absence of yolk sac hematopoiesis from mice with a targeted disruption of the scl gene. Proc. Natl. Acad. Sci. USA 92: 7075-7079.
15. PORCHER, C., W. SWAT, K. ROCKWELL, et al. 1996. The T cell leukemia oncoprotein SCL/tal-1 is essential for development of all hematopoietic lineages. Cell 86: 47-57.
16. WADMAN, I.A., H. OSADA, G.G. GRUTZ, et al. 1997. The LIM-only protein Lmo2 is a bridging molecule assembling an erythroid, DNA-binding complex which includes the TAL1, E47, GATA-1 and Ldb1/NLI proteins. EMBO J. 16: 3145-3157.
17. BRAND, M., J.A. RANISH, N.T. KUMMER, et al. 2004. Dynamic changes in transcription factor complexes during erythroid differentiation revealed by quantitative proteomics. Nat. Struct. Mol. Biol. 11: 73-80.
18. LAHLIL, R., F. LECUYER, S. HERBLOT & T. HOANG. 2004. SCL assembles a multifactoral complex that determines glycophorin A expression. Mol. Cell Biol. 24: 1439-1452.
19. ANGUITA, E., J. HUGHES, C. HEYWORTH, et al. 2004. Globin gene activation during haemopoiesis is driven by protein complexes nucleated by GATA-1 and GATA-2. EMBO J. 23: 2841-2852.
20. DAVIS, J.N., L. MCGHE & S. MEYERS. 2003. The Eto (MTG8) gene family. Gene 303: 1-10.
21. BETTENCOURT-DIAS, M., R. GIET, R. SINKA, et al. 2004. Genome-wide survey of protein kinases required for cell cycle progression. Nature 432: 980-987.
22. GRAÑA, X., A. DE LUCA, N. SANG et al. 1994. PITALRE, a nuclear CDC2-related protein kinase that phosphorylates the retinoblastoma protein in vitro. Proc. Natl. Acad. Sci. USA 91: 3834-3838.
23. WHYATT, D.J., A. KARIS, I.C. HARKES, et al. 1997. The level of the tissue-specific factor GATA-1 affects the cell-cycle machinery. Genes Funct. 1: 11-24.
24. GERING, M. & R. PATIENT. 2005. Hedgehog signaling is required for adult blood stem cell formation in zebrafish embryos. Dev. Cell B: 389-400.
25. PALSTRA, R.J., B. TOLHUIS, E. SPLINTER, et al. 2003. The beta-globin nuclear compartment in development and erythroid differentiation. Nat. Genet. 35: 190-194.
26. PATRINOS, G.P., M. DE KROM, E. DE BOER, et al. 2004. Multiple interactions between regulatory regions are required to stabilize an active chromatin hub. Genes Dev. 18: 1495-1509.
27. BERRY, M., F. GROSVELD & N.A. DILLON. 1992. A single point mutation is the cause of the Greek form of Hereditary Persistence of foetal haemoglobin. Nature 358: 499-502.
28. GIRAUD, S., A. HURLSTONE, S. AVRIL & O. COQUERET. 2004. Implication of BRG1 and cdk9 in the STAT3-mediated activation of the p21waf1 gene. Oncogene 23: 7391-7398.