Improving the prediction of the clinical outcome of breast cancer using evolutionary algorithms

Soft Computing

Volumn 10, Issue 4, 2006, Pages 338-345

  Wahde, Mattias ^a   Szallasi, Z ^b  

^a CHALMERS UNIVERSITY OF TECHNOLOGY   (Sweden)

^b BOSTON CHILDREN S HOSPITAL   (United States)

Author keywords

Breast cancer; Data classification; Evolutionary algorithms

Indexed keywords

EID: 29544449017     PISSN: 14327643     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00500-005-0492-x     Document Type: Article

References (15)

1. Ben-Dor A et al (2000) Tissue classification with gene expression profiles. J Comp Biol 7:559-584
2. Brown MP et al (2000) Knowledge-based analysis of microarray gene expression data by using support vector machines. Proc Natl Acad Sci U S A. 97(1):262-267
3. Deutsch JM (2003) Evolutionary algorithms for finding optimal gene sets in microarray prediction. Bioinformatics 19:45-52
4. Fogel DB (1999) Evolutionary computation: Toward a new philosophy of machine intelligence. 2nd edn. Wiley-IEEE Press
5. Fogel G, Corne DW (2002) Evolutionary computation in bioinformatics. Morgan Kaufmann
6. Haykin S (1998) Neural Networks: A Comprehensive Foundation, 2nd edn. Prentice-Hall, Englewood Cliffs
7. Khan J et al (2001) Classification and diagnostic prediction of cancers using expression profiling and artificial neural networks. Nat Med 7:673-679
8. Li L et al (2002) Gene selection for sample classification based on gene expression data: Study of sensitivity to choice of parameters of the GA/ KNN method. Bioinformatics 17:1131-1142
9. Mitchell M (1996) An Introduction to genetic algorithms. MIT Press, Cambridge
10. Ooi CH, Tan P (2003) Genetic algorithms applied to multi-class prediction for the analysis of gene expression data. Bioinformatcs 19:37-44
11. Ramaswamy S et al (2003) A molecular signature of metastasis in primary solid tumors. Nat Genet 33(1):49-54
12. van't Veer LJ et al (2002) Gene expression profiling predicts clinical outcome of breast cancer. Nature 415:530-536
13. van de Vijver MJ et al (2002) A gene-expression signature as a predictor of survival in breast cancer. N Engl J Med 347:1999-2009
14. Vogelstein B, Kinzler KW (1998) The genetic basis of human cancer. McGraw-Hill, New York
15. Yuen T et al (2002) Accuracy and calibration of commercial oligonucleotide and custom cDNA microarrays. Nucleic Acids Res 30(10):e48