Introduction to the DNA chips analysis;Úvod do technologie DNA čipů

Lekar a Technika

Volumn 35, Issue 3, 2004, Pages 67-75

  Svoboda, Marek ^a   Michálek, Jaroslav ^b  

^a MASARYK MEMORIAL CANCER INSTITUTE   (Czech Republic)

^b MASARYK UNIVERSITY   (Czech Republic)

Author keywords

DNA analysis; DNA chips; Gene expression profiling; Microarrays

Indexed keywords

ARTICLE; DNA DETERMINATION; DNA MICROARRAY; GENE EXPRESSION; GENE MAPPING; GENE SEQUENCE; GENETIC CODE; HUMAN GENOME; MEDICAL RESEARCH; QUANTITATIVE ANALYSIS; TECHNOLOGY;

EID: 2942724490     PISSN: 03015491     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (50)

1. Watson, J. D., Crick, F. H.: Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Acid. G. D. Nature, Vol. 248, 1953, pp. 737-738.
2. Lander, E. S., Linton, L. M., Birren, B.: Initial Sequencing and Analysis of the Human Genome. Nature, Vol. 409, 2001, pp. 860-921.
3. Venter, J. C., Adams, M. D., Myers, E. W. et al.: The Sequence of the Human Genome, Science, Vol. 291, 2001, pp. 1304-1351.
4. TIGR - The The Institute for Genomic Research, Web: www.tigr.org.
5. Chakravarti, A.: Single Nucleotide Polymorphisms: ...to a Future of Genetic Medicine. Nature, Vol. 409, 2001, pp. 822-823.
6. Hacia, J. G.: Resequencing and Mutational Analysis Using Oligonucleotide Microarrays. Nature Genet., Vol. 21, Suppl. 1, 1999, pp. 42-47.
7. Schena, M., Shalon, D., Dawis, R. V., Brown, P. Q.: Quantitative Monitoring of Gene Expression Patterns with a Complementary DNA Microarray. Science, Vol. 270, 1995, pp. 467-470.
8. Arcellana-Panlilio, M., Robbins, S. M.: Cutting-edge Technology: I. Global Gene Expression Profiling Using DNA Microarrays. Am. J. Physiol. Gastrointest. Liver Physiol., Vol. 282, 2002, pp. G397-402.
9. Alizadeh, A. A., Ross, D. T., Perou, C. M., van de Rijn, M.: Towards a Novel Classification of Human Malignancies Based on Gene Expression Patterns, J. Pathol., Vol. 195, 2001, pp. 41-52.
10. Duggan, D. J., Bittner, M., Chen, Y., et al.: Expression Profiling Using cDNA Microarrays, Nature Genet., Vol. 21, Suppl. 1, 1999, pp. 10-14.
11. Deyholos, M. K., Galbraith, D. W.: High-density Microarrays for Gene Expression Analysis, Cytometry, Vol. 43, 2001, pp. 229-238.
12. Lipshutz, R. J., Fodor, S. P. A., Gingeras, T. R., Lockhart, D. J.: High Density Synthetic Oligonucleotide Arrays, Nature Genet., Vol. 21, Suppl. 1, 1999, pp. 20-24.
13. Phimister, B.: A Note on Nomenclature. Nature Genet, Vol. 21, Suppl. 1, 1999, p. 1.
14. Schena, M., Dawis, R. W.: Technology Standards for Microarray Research. In: Microarray Biochip Technology (Ed.: Schena, M.), Eaton Publishing, Sunnyvale, USA, 2000, pp. 1-19.
15. Eickhoff, H., Schneider, U., Nordhoff, E. et al.: Technology Development for DNA Chips. In: DNA Arrays - Technologies and Experimental Strategies (Ed.: Grigorenko, V. E.), CRC Press, Boca Raton, USA, 2002, pp. 1-9.
16. van Hal, N. L., Vorst, O., van Houwelingen, A. M. et al.: The Application of DNA Microarrays in Gene Expression Analysis. J. Biotechnol, Vol. 78, 2000, pp. 271-280.
17. Shalon, D., Smith, S. J., Brown, P. O.: A DNA Microarray System for Analyzing Complex DNA Samples Using Two Color Fluorescent Probe Hybridization. Genome Methods, Vol. 6, 1996, pp. 301-306.
18. Schena, M., Shalon, D., Heller, R. et al.: Parallel Human Genome Analysis: Microarray-based Expression Monitoring of 1000 Genes. Proc. Natl. Acad. Sci. USA, Vol. 93, 1996, pp. 10614-10619.
19. th International Congress of Human Genetics, Wienna, Austria, 2001.
20. Benters, R., Niemeyer, C. M., Drutschmann, D. et al.: DNA Microarrays with PAMAM Dendritic Linker Systems. Nucleic Acids Res., Vol. 30, 2002, pp. E10/7.
21. Rose, D.: Microfluidic Technologies and Instrumentation for Printing DNA Microarrays. In: Microarray Biochip Technology (Ed.: Schena, M.), Eaton Publishing, Sunnyvale, USA, 2000, pp. 19-39.
22. Mace, L. M., Montagu, J., Rose, D. S. et al.: Novel Microarray Printing and Detection Technologies. In: Microarray Biochip Technology (Ed.: Schena, M.), Eaton Publishing, Sunnyvale, USA, 2000, pp. 39-65.
23. Cheung, V.G., Morley, M., Aguilar, F., et al.: Making and Reading Microarrays, Nature Genet., Vol. 21, Supl. 1, 1999, pp. 15-19.
24. Okamoto, T., Suzuki, T., Yamamoto, N.: Microarray Fabrication with Covalent Attachment of DNA Using Bubble Jet Technology, Nature Biotechnol., Vol. 18, 2000, pp. 438-441.
25. Allain, L. R., Askari, M., Stokes, D. L., Vo-Dinh, T.: Microarray Sampling-platform Fabrication Using Bubble-jet Technology for a Biochip System. Fresenius J. Anal. Chem., Vol. 371, 2001, pp. 146-150.
26. Ye, R. W., Wang, T., Bedzyk, L., Croker, K. M.: Applications of DNA Microarrays in Microbial Systems, J. Microbiol. Methods, Vol. 47, 2001, pp. 257-272.
27. Gress, T. M., Hoheisel, J. D., Lennon, G. G., et al.: Hybridization Fingerprinting of High-density cDNA-library Arrays with cDNA Pools Derived from Whole Tissues. Mammalian Genome, Vol. 3, 1992, pp. 609-619.
28. Schulze, A., Downward, J.: Navigating Gene Expression Using Microarrays - A Technology Review. Nature Cell Biol., Vol. 3, 2001, pp. E190-195.
29. Dorris, D., Ramakrishnan, R., Sendera, T. et. al.: Oligonucleotide Array Technologies for Gene Expression Profiling. In: DNA Arrays -Technologies and Experimental Strategies (Ed.: Grigorenko, V. E.). CRC Press, Boca Raton, USA, 2002, pp. 25-39.
30. DeRisi, J. L., Iyer, V. R., Brown, P. O.: Exploring the Metabolic and Genetic Control of Gene Expression on a Genomic Scale. Science, Vol. 278, 1997, pp. 680-686.
31. Affymetrix, www.affymetrix.com
32. Bruchová, B., Brdička, R.: Čipové technologie v genetickém testováni. Postgraduálni medicina, roč. 5, 2002, s. 520-524.
33. Fodor, S. P. A., Read, J. L., Pirrung, M. C. et al.: Light-directed, Spatially Addressable Parallel Chemical Synthesis. Science, Vol. 251, 1991, pp. 767-773.
34. Warrington, J. A., Dee, S., Trulson, M.: Large-scale Genomic Analysis Using Affymetrix GeneChip Probe Arrays. In: Microarray Biochip Technology (Ed.: Schena, M.). Eaton Publishing, Sunnyvale, USA, 2000, pp. 119-149.
35. Southern, E., Mir, K., Shchepinv, M.: Molecular Interactions on Microarrays. Nature Genet., Vol. 21, Suppl. 1, 1999, pp. 5-9.
36. Incyte Genomics and Agilent Technologies: www.incyte.com, www.chem.agilent.com.
37. Nanogen: www.nanogen.com.
38. Khodarev, N. N., Yu, J., Nodzenski, J. S. et al.: Method of RNA Purification from Endothelial Cells for DNA Array Experiments. Biotechniques, Vol. 32, 2002, pp. 316-320.
39. Emmert-Buck, M. R., Bonner, R. F., Smith, P. D. et al.: Laser Capture Microdissection. Science, Vol. 274, 1996, pp. 998-1001.
40. Bonner, R. F., Emmert-Buck, M. R., Cole, K. et al.: Laser Capture Microdissection: Molecular Analysis of Tissue. Science, Vol. 278, 1997, pp. 1481-1483.
41. Perou, C. M., Sorlie, T., Eisen, M. B. et al.: Molecular Portraits of Human Breast Tumors. Nature, Vol. 406, 2000, pp. 747-752.
42. Eberwine, J., Yeh, H., Miyashiro, K. et al.: Analysis of Gene Expression in Single Live Neurons, Proc. Natl. Acad. Sci. USA, Vol. 89, 1992, pp. 3010-3014.
43. Van Gelder, R., von Zastrow, M., Yool, A. et al.: Amplified RNA Synthesized from Limited Quantities of Heterogenous DNA. Proc. Natl. Acad. Sci. USA, Vol. 87, 1990, pp. 1663-1667.
44. Basarsky, T., Verdnik, D., Ye Zhai, J., Wellis, D.: Overview of a Microarray Scanner: Design Essentials for an Integrated Acquisition and Analysis Platform. In: Microarray Blochip Microarray Biochip Technology (Ed.: Schena, M.), Eaton Publishing, Sunnyvale, USA, 2000, pp. 265-285.
45. Graves, D. J., Su, H. J., Addya, S. et al.: Four-laser Scanning Confocal System for Microarray Analysis. Biotechniques, Vol. 32, 2002, pp. 346-354.
46. Zlatanova, J., Mirzabekov, A.: Gel-immobilized Microarrays of Nucleic Acids and Proteins. In: DNA Arrays - Methods and Protocols (Ed: Rampal, J.B.), Humana Press Inc., Totowa, 2001, pp. 17-39.
47. Stanford Medical School: http://cmgm.stanford.edu/Pbrown/index.html and http://cmgm.stanford.edu/pbrown/scanner.html
48. Albert Einstein College of Medicine: http://sequence.aecom.yu.edu/bio- inf/funcgenomic.html
49. Thompson, A.: It's Easy to Build your Own Microarrayer!, Trends in Microbiology, Volume 9, 2001, pp, 154-156.
50. Brdička, R.: Biočipová revoluce v DNA laboratořich? Vesmir, Vol. 77, 1998, pp. 447-449.