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Volumn 44, Issue 3, 2004, Pages 1010-1023

Development and use of hydrophobic surface area (HSA) descriptors for computer-assisted quantitative structure-activity and structure-property relationship studies

Author keywords

[No Author keywords available]

Indexed keywords

GRAM-POSITIVE BACTERIA; INTERMOLECULAR INTERACTIONS; MOLECULAR CONNECTIVITY (MC); MOLECULAR DESCRIPTORS;

EID: 2942717194     PISSN: 00952338     EISSN: None     Source Type: Journal    
DOI: 10.1021/ci034284t     Document Type: Article
Times cited : (36)

References (60)
  • 2
    • 0004315104 scopus 로고    scopus 로고
    • Mannhold, R., Kubinyi, H., Timmerman, H., Eds.; Wiley-VCH: Weinheim, Federal Republic of Germany, Methods and Principles in Medicinal Chemistry
    • Todeschini, R.; Consonni, V. Handbook of Molecular Descriptors; Mannhold, R., Kubinyi, H., Timmerman, H., Eds.; Wiley-VCH: Weinheim, Federal Republic of Germany, Methods and Principles in Medicinal Chemistry, Vol. 11, 2000.
    • (2000) Handbook of Molecular Descriptors , vol.11
    • Todeschini, R.1    Consonni, V.2
  • 5
    • 0001638258 scopus 로고
    • Yalkowsky, S. H., Sinkula, A. A., Valvani, S. C., Eds.; Marcel Dekker: New York, NY
    • Pearlman, R. S. In Physical Chemical Properties of Drugs; Yalkowsky, S. H., Sinkula, A. A., Valvani, S. C., Eds.; Marcel Dekker: New York, NY, 1980; pp 321-347.
    • (1980) Physical Chemical Properties of Drugs , pp. 321-347
    • Pearlman, R.S.1
  • 7
    • 84986487067 scopus 로고
    • Atomic charge calculations for quantitative structure-property relationships
    • Dixon, S. L.; Jurs, P. C. Atomic Charge Calculations for Quantitative Structure-Property Relationships. J. Comput. Chem. 1992, 13, 492-504.
    • (1992) J. Comput. Chem. , vol.13 , pp. 492-504
    • Dixon, S.L.1    Jurs, P.C.2
  • 9
    • 0141890762 scopus 로고    scopus 로고
    • On the physical interpretation of QSAR models
    • Stanton, D. T. On the Physical Interpretation of QSAR Models. J. Chem. Inf. Comput. Sci. 2003, 43, 1423-1433.
    • (2003) J. Chem. Inf. Comput. Sci. , vol.43 , pp. 1423-1433
    • Stanton, D.T.1
  • 10
    • 1542741027 scopus 로고    scopus 로고
    • Development of a quantitative structure-activity relationship model for inhibition of gram-positive bacterial cell growth By biarylamides
    • in press
    • Stanton, D. T.; Madhav, P. J.; Wilson, L. J.; Morris, T. W.; Hershberger, P. M.; Parker, C. N. Development of a Quantitative Structure-Activity Relationship Model for Inhibition of Gram-positive Bacterial Cell Growth by Biarylamides. J. Chem. Inf. Comput. Sci., in press.
    • J. Chem. Inf. Comput. Sci.
    • Stanton, D.T.1    Madhav, P.J.2    Wilson, L.J.3    Morris, T.W.4    Hershberger, P.M.5    Parker, C.N.6
  • 11
    • 0001273361 scopus 로고
    • Computer-assisted study of the relationship between molecular structure and surface tension of organic compounds
    • Stanton, D. T.; Jurs, P. C. Computer-Assisted Study of the Relationship Between Molecular Structure and Surface Tension of Organic Compounds. J. Chem. Inf. Comput. Sci. 1992, 32, 109-115.
    • (1992) J. Chem. Inf. Comput. Sci. , vol.32 , pp. 109-115
    • Stanton, D.T.1    Jurs, P.C.2
  • 12
    • 84862369995 scopus 로고    scopus 로고
    • Glossary of terms used in computational drug design
    • accessed January 2004
    • International Union of Pure and Applied Chemistry, Chemistry and Human Health Division. Glossary of Terms Used in Computational Drug Design (IUPAC Recommendations 1997). http://www.iupac.org/ reports/1997/6905vandewaterbeemd/ glossary.html (accessed January 2004).
    • IUPAC Recommendations 1997
  • 13
    • 24544469216 scopus 로고
    • oct from Structures
    • oct from Structures. Chem. Rev. 1993, 93, 1281-1306.
    • (1993) Chem. Rev. , vol.93 , pp. 1281-1306
    • Leo, A.J.1
  • 14
    • 8644243613 scopus 로고
    • Partition coefficients and their uses
    • Leo, A.; Hansch, C.; Elkins, D. Partition Coefficients and Their Uses. Chem. Rev. 1971, 71, 525-616.
    • (1971) Chem. Rev. , vol.71 , pp. 525-616
    • Leo, A.1    Hansch, C.2    Elkins, D.3
  • 15
    • 0031309190 scopus 로고    scopus 로고
    • 3D-modelling and prediction by WHIM descriptors. Part 8. Toxicity and physico-chemical properties of environmental priority chemicals by 2D-TI and 3D-WHIM descriptors
    • Todeschini, R.; Vighi, M.; Finizio, A.; Gramatica, P. 3D-Modelling and Prediction by WHIM Descriptors. Part 8. Toxicity and Physico-Chemical Properties of Environmental Priority Chemicals by 2D-TI and 3D-WHIM Descriptors. SAR QSAR Environ. Res. 1997, 7, 173-193.
    • (1997) SAR QSAR Environ. Res. , vol.7 , pp. 173-193
    • Todeschini, R.1    Vighi, M.2    Finizio, A.3    Gramatica, P.4
  • 16
    • 0028293252 scopus 로고
    • The conformation-dependent lipophilicity of morphine glucuronides as calculated from their molecular lipophilicity potential
    • Gaillard, P.; Carrupt, P.; Testa, B. The Conformation-Dependent Lipophilicity of Morphine Glucuronides as Calculated From Their Molecular Lipophilicity Potential. Bioorg. Med. Chem. Lett. 1994, 4, 737-742.
    • (1994) Bioorg. Med. Chem. Lett. , vol.4 , pp. 737-742
    • Gaillard, P.1    Carrupt, P.2    Testa, B.3
  • 17
    • 0026568839 scopus 로고
    • Relationship between partitioning properties and (calculated) molecular surface. SPR investigation of imidazoquinazolone derivatives
    • Takacs-Novaki, K.; Nagy, P.; Jozani, M.; Orfi, L.; Dunn, W. J. III; Szasz, G. Relationship Between Partitioning Properties and (Calculated) Molecular Surface. SPR Investigation of Imidazoquinazolone Derivatives. Acta Pharm. Hungarica 1992, 61, 55-64.
    • (1992) Acta Pharm. Hungarica , vol.61 , pp. 55-64
    • Takacs-Novaki, K.1    Nagy, P.2    Jozani, M.3    Orfi, L.4    Iii, D.W.J.5    Szasz, G.6
  • 18
    • 0025336485 scopus 로고
    • Relationships between octanol water partition-coefficients and total molecular-surface area and total molecular volume of hydrophobic organic chemicals
    • Debruijn, J.; Hermens, J. Relationships Between Octanol Water Partition-Coefficients and Total Molecular-Surface Area and Total Molecular Volume of Hydrophobic Organic Chemicals. Quant Struct. Act. Relat. 1990, 9, 11-21.
    • (1990) Quant Struct. Act. Relat. , vol.9 , pp. 11-21
    • Debruijn, J.1    Hermens, J.2
  • 19
    • 0024529655 scopus 로고
    • Surface area and hydrophobicity of small molecules
    • Dunn, W. J. III Surface Area and Hydrophobicity of Small Molecules. Prog. Clin. Biol. Res. 1989, 291, 47-51.
    • (1989) Prog. Clin. Biol. Res. , vol.291 , pp. 47-51
    • Dunn III, W.J.1
  • 20
    • 0023680873 scopus 로고
    • The relationship between chemical structure and the logarithm of the partition coefficient
    • Koehler, M. G.; Grigoras, S.; Dunn, W. J. III The Relationship Between Chemical Structure and the Logarithm of the Partition Coefficient. Quant. Struct.-Act. Relat. 1988, 7, 150-159.
    • (1988) Quant. Struct.-act. Relat. , vol.7 , pp. 150-159
    • Koehler, M.G.1    Grigoras, S.2    Dunn III, W.J.3
  • 21
    • 37049076677 scopus 로고
    • A surface area approach to determination of partition coefficients
    • Camilleri, P.; Watts, S. A.; Boraston, J. A. A Surface Area Approach to Determination of Partition Coefficients. J. Chem. Soc., Perkin Trans. 1988, 2, 1699-1707.
    • (1988) J. Chem. Soc., Perkin Trans. , vol.2 , pp. 1699-1707
    • Camilleri, P.1    Watts, S.A.2    Boraston, J.A.3
  • 22
    • 0023263358 scopus 로고
    • The role of solvent-accessible surface area in determining partition coefficients
    • Dunn, W. J. III; Koehler, M. G.; Grigoras, S. The Role of Solvent-Accessible Surface Area in Determining Partition Coefficients. J. Med. Chem. 1987, 30, 1121-1126.
    • (1987) J. Med. Chem. , vol.30 , pp. 1121-1126
    • Dunn III, W.J.1    Koehler, M.G.2    Grigoras, S.3
  • 23
    • 0023399173 scopus 로고
    • Correlation of octanol/water partition coefficients and total molecular surface area for highly hydrophobic aromatic compounds
    • Doucette, W. J.; Andren, A. W. Correlation of Octanol/Water Partition Coefficients and Total Molecular Surface Area for Highly Hydrophobic Aromatic Compounds. Environ. Sci. Technol. 1987, 21, 821-824.
    • (1987) Environ. Sci. Technol. , vol.21 , pp. 821-824
    • Doucette, W.J.1    Andren, A.W.2
  • 24
    • 0021876826 scopus 로고
    • Estimation of hydrophobicity based on the solvent-accessible surface area of molecules
    • Iwase, K.; Komatsu, K.; Hirono, S.; Nakagawa, S.; Moriguchi, I. Estimation of Hydrophobicity Based on the Solvent-Accessible Surface Area of Molecules. Chem. Pharm. Bull. 1985, 33, 2114-2121.
    • (1985) Chem. Pharm. Bull. , vol.33 , pp. 2114-2121
    • Iwase, K.1    Komatsu, K.2    Hirono, S.3    Nakagawa, S.4    Moriguchi, I.5
  • 25
    • 0017143716 scopus 로고
    • Partition coefficients and surface areas of some alkylbenzenes
    • Yalkowsky, S. H.; Valvani, S. C. Partition Coefficients and Surface Areas of Some Alkylbenzenes. J. Med. Chem. 1976, 19, 727-728.
    • (1976) J. Med. Chem. , vol.19 , pp. 727-728
    • Yalkowsky, S.H.1    Valvani, S.C.2
  • 26
    • 0017126788 scopus 로고
    • Dependence of hydrophobicity of apolar molecules on their Molecular volume
    • Leo, A.; Hansch, C.; Jow, P. Y. C. Dependence of Hydrophobicity of Apolar Molecules on Their Molecular Volume. J. Med. Chem. 1976, 19, 611-615.
    • (1976) J. Med. Chem. , vol.19 , pp. 611-615
    • Leo, A.1    Hansch, C.2    Jow, P.Y.C.3
  • 27
    • 0037498039 scopus 로고    scopus 로고
    • ADME evaluation in drug discovery. 2. Prediction of partition coefficient by atom-additive approach based on atom-weighted solvent accessible surface areas
    • Hou, T. J.; Xu, X. J. ADME Evaluation in Drug Discovery. 2. Prediction of Partition Coefficient by Atom-Additive Approach Based on Atom-Weighted Solvent Accessible Surface Areas. J. Chem. Inf. Comput. Sci. 2003, 43, 1058-1067.
    • (2003) J. Chem. Inf. Comput. Sci. , vol.43 , pp. 1058-1067
    • Hou, T.J.1    Xu, X.J.2
  • 28
    • 0030640969 scopus 로고    scopus 로고
    • Introduction of solvent-accessible surface area in the calculation of the hydrophobicity parameter log P from an atomistic approach
    • Masuda, T.; Jikihara, T.; Nakamura, K.; Kimura, A.; Takagi, T.; Fujiwara, H. Introduction of Solvent-Accessible Surface Area in the Calculation of the Hydrophobicity Parameter log P from an Atomistic Approach. J. Pharm. Sci. 1997, 86, 57-63.
    • (1997) J. Pharm. Sci. , vol.86 , pp. 57-63
    • Masuda, T.1    Jikihara, T.2    Nakamura, K.3    Kimura, A.4    Takagi, T.5    Fujiwara, H.6
  • 29
    • 0036405073 scopus 로고    scopus 로고
    • Database comprising biomolecular descriptors relevant to protein adsorption on microarray surfaces
    • Nicolau, D. V., Jr.; Nicolau, D. V. Database Comprising Biomolecular Descriptors Relevant to Protein Adsorption on Microarray Surfaces. SPIE Proceedings 2002, 3, 109-116.
    • (2002) SPIE Proceedings , vol.3 , pp. 109-116
    • Nicolau Jr., D.V.1    Nicolau, D.V.2
  • 30
    • 0034351504 scopus 로고    scopus 로고
    • A widely applicable set of descriptors
    • Labute, P. A Widely Applicable Set of Descriptors. J. Mol. Graph. Model. 2000, 18, 464-477.
    • (2000) J. Mol. Graph. Model. , vol.18 , pp. 464-477
    • Labute, P.1
  • 31
    • 0034728673 scopus 로고    scopus 로고
    • Prediction of properties from simulations: Free energies of solvation in hexadecane, octanol, and water
    • Duffy, E. M.; Jorgensen, W. L. Prediction of Properties from Simulations: Free Energies of Solvation in Hexadecane, Octanol, and Water. J. Am. Chem. Soc. 2000, 122, 2878-2888.
    • (2000) J. Am. Chem. Soc. , vol.122 , pp. 2878-2888
    • Duffy, E.M.1    Jorgensen, W.L.2
  • 32
    • 10344253046 scopus 로고
    • Development and use of charged partial surface area descriptors in computer-assisted quantitative structure-property relationship studies
    • Stanton, D. T.; Jurs, P. C. Development and Use of Charged Partial Surface Area Descriptors in Computer-Assisted Quantitative Structure-Property Relationship Studies. Anal. Chem. 1990, 62, 2323-2329.
    • (1990) Anal. Chem. , vol.62 , pp. 2323-2329
    • Stanton, D.T.1    Jurs, P.C.2
  • 34
    • 0001509942 scopus 로고    scopus 로고
    • Prediction of physicochemical parameters by atomic contributions
    • Wildman, S. A.; Crippen, G. M. Prediction of Physicochemical Parameters by Atomic Contributions. J. Chem. Inf. Comput. Sci. 1999, 39, 868-873.
    • (1999) J. Chem. Inf. Comput. Sci. , vol.39 , pp. 868-873
    • Wildman, S.A.1    Crippen, G.M.2
  • 35
    • 0037401361 scopus 로고    scopus 로고
    • QSAR studies in substituted l,2,3,4,6,7,12,12a-octa- hydropyrazino[2′,1′:6,1]pyrido[3,4-b]indolesA potent class of neuroleptics
    • Saxena, A. K.; Ram, S.; Saxena, M.; Singh, N.; Prathipati, P.; Jain, P. C.; Singh, H. K.; Anand, N. QSAR Studies in Substituted l,2,3,4,6,7,12,12a-octa- hydropyrazino[2′,1′:6,1]pyrido[3,4-b]indolesA Potent Class of Neuroleptics. Bioorgan. Med. Chem. 2003, 11, 2085-2090.
    • (2003) Bioorgan. Med. Chem. , vol.11 , pp. 2085-2090
    • Saxena, A.K.1    Ram, S.2    Saxena, M.3    Singh, N.4    Prathipati, P.5    Jain, P.C.6    Singh, H.K.7    Anand, N.8
  • 37
    • 0036687414 scopus 로고    scopus 로고
    • Quantitative structure-cytotoxicity relationships of sesquiterpene lactones derived from partial charge (Q)-based fractional accessible surface area descriptors (Q_frASAs)
    • Schmidt, T. J.; Heilmann, J. Quantitative Structure-Cytotoxicity Relationships of Sesquiterpene Lactones derived from partial charge (Q)-based fractional Accessible Surface Area Descriptors (Q_frASAs). Quant. Struct.-Act. Relat. 2002, 21, 276-287.
    • (2002) Quant. Struct.-Act. Relat. , vol.21 , pp. 276-287
    • Schmidt, T.J.1    Heilmann, J.2
  • 38
    • 0036827078 scopus 로고    scopus 로고
    • Prediction of protein retention times in anion-exchange chromatography systems using support vector regression
    • Song, M.; Breneman, C. M.; Bi, J.; Sukumar, N.; Bennett, K. P.; Cramer, S.; Tugcu, N. Prediction of Protein Retention Times in Anion-Exchange Chromatography Systems Using Support Vector Regression. J. Chem. Inf. Comput. Sci. 2002, 42, 1347-1357.
    • (2002) J. Chem. Inf. Comput. Sci. , vol.42 , pp. 1347-1357
    • Song, M.1    Breneman, C.M.2    Bi, J.3    Sukumar, N.4    Bennett, K.P.5    Cramer, S.6    Tugcu, N.7
  • 39
    • 0036708538 scopus 로고    scopus 로고
    • Classification of biologically active compounds by median partitioning
    • Godden, J. W.; Xue, L.; Bajorath, J. Classification of Biologically Active Compounds by Median Partitioning. J. Chem. Inf. Comput. Sci. 2002, 42, 1263-1269.
    • (2002) J. Chem. Inf. Comput. Sci. , vol.42 , pp. 1263-1269
    • Godden, J.W.1    Xue, L.2    Bajorath, J.3
  • 41
    • 0016950330 scopus 로고
    • ADAPT: A computer system for automating data analysis using pattern-recognition techniques
    • Stuper, A. J.; P. C. Jurs. ADAPT: A Computer System for Automating Data Analysis using Pattern-Recognition Techniques. J. Chem. Inf. Comput. Sci. 1976, 2, 99-105.
    • (1976) J. Chem. Inf. Comput. Sci. , vol.2 , pp. 99-105
    • Stuper, A.J.1    Jurs, P.C.2
  • 42
    • 0018753824 scopus 로고
    • Olson, R. C., Christoffersen, R. E., Eds.; American Chemical Society: Washington, DC
    • Jurs, P. C.; Chou, J. T.; Yuan, M. In Computer-Assisted Drug Design; Olson, R. C., Christoffersen, R. E., Eds.; American Chemical Society: Washington, DC, 1979; pp 103-129.
    • (1979) Computer-assisted Drug Design , pp. 103-129
    • Jurs, P.C.1    Chou, J.T.2    Yuan, M.3
  • 43
    • 0033630650 scopus 로고    scopus 로고
    • Development of a quantitative structure-property relationship model for estimating normal boiling points of small multifunctional organic molecules
    • Stanton, D. T. Development of a Quantitative Structure-Property Relationship Model for Estimating Normal Boiling Points of Small Multifunctional Organic Molecules. J. Chem. Inf. Comput. Sci. 2000, 40, 81-90.
    • (2000) J. Chem. Inf. Comput. Sci. , vol.40 , pp. 81-90
    • Stanton, D.T.1
  • 44
    • 11344251792 scopus 로고
    • Selection of molecular descriptors for quantitative structure-activity relationships
    • Sutter, J. M.; Jurs, P. C. Selection of Molecular Descriptors for Quantitative Structure-Activity Relationships. Data Handl. Sci. Technol. 1995, 15, 111-132.
    • (1995) Data Handl. Sci. Technol. , vol.15 , pp. 111-132
    • Sutter, J.M.1    Jurs, P.C.2
  • 45
    • 0003019648 scopus 로고    scopus 로고
    • An overview of genetic methods
    • Devillers, J., Ed.; Academic Press: New York, NY
    • Luke, B. T. An Overview of Genetic Methods. In Genetic Algorithms in Molecular Modeling; Devillers, J., Ed.; Academic Press: New York, NY, 1996; pp 35-66.
    • (1996) Genetic Algorithms in Molecular Modeling , pp. 35-66
    • Luke, B.T.1
  • 47
    • 11144325691 scopus 로고
    • Partial least-squares regression: A tutorial
    • Geladi, P.; Kowalski, B. R. Partial Least-Squares Regression: A Tutorial. Anal. Chim. Acta 1986, 185, 1-17.
    • (1986) Anal. Chim. Acta , vol.185 , pp. 1-17
    • Geladi, P.1    Kowalski, B.R.2
  • 48
    • 84900531145 scopus 로고
    • Statistical validation of QSAR results
    • van de Waterbeemd, H., Ed.; VCH: New York, NY
    • Wold, S.; Eriksson, L. Statistical Validation of QSAR Results. In Chemometric Methods In Molecular Design; van de Waterbeemd, H., Ed.; VCH: New York, NY, 1995; pp 309-318.
    • (1995) Chemometric Methods in Molecular Design , pp. 309-318
    • Wold, S.1    Eriksson, L.2
  • 49
    • 0036557847 scopus 로고    scopus 로고
    • Modelling blood-brain barrier partitioning using the electrotopological state
    • and references therein
    • Rose, K.; Hall, L. H.; Kier, L. B. Modelling Blood-Brain Barrier Partitioning Using the Electrotopological State. J. Chem. Inf. Comput. Sci. 2002, 42, 651-666, and references therein.
    • (2002) J. Chem. Inf. Comput. Sci. , vol.42 , pp. 651-666
    • Rose, K.1    Hall, L.H.2    Kier, L.B.3
  • 53
    • 0000955808 scopus 로고
    • Computer-assisted prediction of normal boiling points of pyrans and pyrroles
    • Stanton, D. T.; Egolf, L. M.; Jurs, P. C. Computer-Assisted Prediction of Normal Boiling Points of Pyrans and Pyrroles. J. Chem. Inf. Comput. Sci. 1992, 32, 306-316.
    • (1992) J. Chem. Inf. Comput. Sci. , vol.32 , pp. 306-316
    • Stanton, D.T.1    Egolf, L.M.2    Jurs, P.C.3
  • 56
    • 0031464488 scopus 로고    scopus 로고
    • Molecular factors influencing drug transfer across the blood-brain barrier
    • Gratten, J. A.; Abraham, M. H.; Bradbury, M. W.; Chadha, H. S. Molecular factors influencing drug transfer across the blood-brain barrier. J. Pharm. Pharmacol. 1997, 49, 1211-1216.
    • (1997) J. Pharm. Pharmacol. , vol.49 , pp. 1211-1216
    • Gratten, J.A.1    Abraham, M.H.2    Bradbury, M.W.3    Chadha, H.S.4
  • 57
    • 0003500631 scopus 로고    scopus 로고
    • University of Milano-Bicocca, Milano, Italy
    • Dragon, version 3.0, 2003, Todeschini, R.; Consonni, V.; Pavan, M., Milano Chemometrics and QSAR Research Group, University of Milano-Bicocca, Milano, Italy. http://www.disat.unimib.it/chm/.
    • (2003) Dragon, Version 3.0
    • Todeschini, R.1    Consonni, V.2    Pavan, M.3


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