Dideoxynucleoside triphosphate-sensitive DNA polymerase from rice is involved in base excision repair and immunologically similar to mammalian DNA pol β

Biochemical and Biophysical Research Communications

Volumn 320, Issue 1, 2004, Pages 145-155

  Sarkar, Sailendra Nath ^a   Bakshi, Sankar ^a,b   Mokkapati, Sanath K ^a,c   Roy, Sujit ^a   Sengupta, Dibyendu N ^a  

^a BOSE INSTITUTE   (India)

^b VIDYASAGAR COLLEGE   (India)

^c University of Texas Medical Branch School of Medicine   (United States)

Author keywords

Base excision repair; ddNTP sensitivity; DNA polymerase; DNA polymerase ; DNA repair; Rice

Indexed keywords

2',3' DIDEOXYCYTIDINE 5' TRIPHOSPHATE; APHIDICOLIN; DEOXYCYTIDINE TRIPHOSPHATE; DIDEOXYNUCLEOSIDE TRIPHOSPHATE; DNA DIRECTED DNA POLYMERASE BETA; DNA POLYMERASE; IMMUNOGLOBULIN G; NUCLEOSIDE DERIVATIVE; PHOSPHORUS 32; PLANT EXTRACT; POLYCLONAL ANTIBODY; UNCLASSIFIED DRUG;

ARTICLE; ENZYME ACTIVITY; EXCISION REPAIR; MOLECULAR WEIGHT; NONHUMAN; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; RAT; RICE; SHOOT TIP CULTURE; SILVER STAINING; WESTERN BLOTTING;

AGING; ANIMALS; DIDEOXYNUCLEOSIDES; DINUCLEOSIDE PHOSPHATES; DNA POLYMERASE BETA; DNA REPAIR; ENZYME ACTIVATION; ENZYME INHIBITORS; MAMMALS; ORYZA SATIVA; RATS; SEEDS;

ANIMALIA; MAMMALIA; ZIZIPHUS MAURITIANA;

EID: 2942672062     PISSN: 0006291X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbrc.2004.05.152     Document Type: Article

References (48)

1. Chen H., Bryan S.K., Moses R.E. Cloning the pol B gene of Escherichia coli and identification of its product. J. Biol. Chem. 264:1989;20591-20593
2. Minkley E.G. Jr., Leney A.T., Bodner J.B., Panicker M.M., Brown W.E. Escherichia coli DNA polymerase I. Construction of a pol A plasmid for amplification and an improved purification Scheme. J. Biol. Chem. 259:1984;10386-10392
3. Kawasaki Y., Sugino A. Yeast Replicative DNA polymerases and their role at the replication fork. Mol. Cells. 12:2001;277-285
4. Sengupta D.N., Zmudzka B.Z., Kumar P., Cobianchi F., Swowrovski J., Wilson S.H. Sequence of human DNA polymerase β mRNA obtained through cDNA cloning. Biochem. Biophys. Res. Commun. 136:1986;341-347
5. Abbots J., Sengupta D.N., Zmudka B.Z., Widen S.G., Notario V., Wilson S.H. Expression of human DNA polymerase β in Escherichia coli and characterization Of the recombinant enzyme. Biochemistry. 17:1988;901-909
6. Richards M.C., Litvak S., Castroviejo M. DNA polymerase from wheat embryos: a plant δ like DNA polymerase. Arch. Biochem. Biophys. 287:1991;141-150
7. Luque A.E., Benedetto J.P., Castroviejo M. Wheat DNA polymerase C1: homologue of rat DNA polymerase β Plant Mol. Biol. 38:1998;647-654
8. Yokoy M., Ito M., Izumi M., Miyazawa H., Nakai H., Hanaoka F. Molecular cloning of the cDNA for the catalytic subunit of plant DNA polymerase α and its cell cycle dependent expression. Genes Cells. 2:1997;695-709
9. Zmudzka B.Z., Sengupta D.N., Matsukage A., Cobianchi F., Kumar P., Wilson S.H. Structure of rat DNA polymerase β as revealed by partial amino acid sequencing and cDNA cloning. Proc. Natl. Acad. Sci. USA. 83:1988;5106-5110
10. Singhal R.K., Prasad R., Wilson S.H. DNA polymerase β conducts the Gap-filling step in uracil-initiated base excision repair in a Bovine testis nuclear extract. J. Biol. Chem. 270:1995;949-957
11. Leem S.H., Ropp P.A., Sugino A. The yeast Saccharomyces cerevisiae DNA polymerase IV: possible involvement in double strand break DNA repair. Nucleic Acids Res. 22:1994;3011-3017
12. Castroviejo M., Gatius T.M., Litvak S. A low molecular weight DNA polymerase from wheat embryos. Plant Mol. Biol. 15:1990;383-397
13. Sanath Kumar M., Ghosh B., Sengupta D.N. Isolation of mammalian pol β type DNA polymerase from the shoot tips of germinated seedlings of IR-8 rice (Oryza sativa L.). Biochem. Mol. Biol. Int. 39:1996;117-136
14. Warner H.R., Price A.R. Involvement of DNA repair in cancer and aging. J. Gerentol. 44:1989;45-54
15. Mullaart E., Loahman P.H., Berends F., Vijg J. DNA damage metabolism and aging. Mutat. Res. 237:1990;189-210
16. Bohr V.A., Anson R.M. DNA damage, mutation and fine structure DNA repair in aging. Mutat. Res. 338:1995;25-34
17. Walter C.A., Grabowski D.T., Street K.A., Conrad C.C., Richardson A. Analysis and modulation of DNA repair in aging. Mech. Aging Dev. 98:1997;207-222
18. Vijg J., Dolle M.E., Martus H.J., Boerrigter M.E. Transgenic mouse models for studying mutations in vivo: applications in aging research. Mech. Aging Dev. 98:1997;189-202
19. Cheah K.S.E., Osbrone D.J. DNA lesions occur with loss of viability in embryos of ageing rye seeds. Nature (London). 272:1978;593-599
20. Koppen G., Verschaeve L. The alkaline single-cell electrophoresis/comet assay: a way to study DNA repair in radicle cells of germinating Vicia faba. Folia Biol. (Praha.). 47:2001;50-54
21. Ries G., Heller W., Puchta H., Sandermann H., Seidlitz H.K., Hohn B. Elevated UV-B radiation reduces genome stability in plants. Nature. 406:2000;30-31
22. Roberts E.H. Seed Aging: the genome and its expression. Nooden L.D., Leopold A.C. Senescence and Aging in Plants. 1988;Academic Press, San Diego
23. Murta M., Jsuchiya T., Roos E.E. Chromosome damage induced by artificial seed aging in barley: II Types of chromosomal aberration at first mitosis. Bot. Gaz. 143:1982;111-116
24. Bradford M.M. A rapid and sensitive method for the quantitation of microgram quantities of protein using the principle of protein-dye binding. Anal. Biochem. 72:1976;248-254
25. J. Sambrook, D.W. Russell, Molecular cloning, Vol. III, Cold Spring Harbor Laboratory Press, Cold Spring Harbour, New York, 2001
26. Blank A., Silber J.R., Thelen M.P., Dekker C.A. Detection of enzymatic activities in sodium dodecyl sulfate-polyacrylamide gels: DNA polymerase as model enzyme. Anal. Biochem. 125:1983;423-430
27. Karawya E., Swack J.A., Wilson S.H. Improved conditions for activity gel analysis DNA polymerase catalytic polypeptides. Anal. Biochem. 135:1983;318-325
28. Gupta S., Chattopadhyay M.K., Chaterjee P., Ghosh B., SenGupta D.N. Expression of abscisic acid-responsive element-binding protein in salt-tolerant indica rice (Oryza sativa L. cv. Pokkali). Plant Mol. Biol. 37:1998;629-637
29. Prasad R., Singhal R.K., Srivastava D.K., Molina J.T., Tomkinson A.E., Wilson S.H. Specific interaction of DNA polymerase β and DNA ligase I in a multiprotein base excision repair complex from bovine testis. J. Biol. Chem. 271:1996;16000-16007
30. Burgers P.M., et al. Eukaryotic DNA polymerases: proposal for a revised nomenclature. J. Biol. Chem. 276:2001;43487-43490
31. Kumar A., Widen S.G., Williams K.R., Wilson S.H. Studies of the domain structure of mammalian DNA polymerase beta. Identification of a discrete template binding domain. J. Biol. Chem. 265:1990;2124-2131
32. Fornace A.J. Jr., Zmudzka B., Hollander M.C., Wilson S.H. Induction of beta-polymerase mRNA by DNA damaging agents in Chinese hamster ovary cells. Mol. Cell. Biol. 9:1989;851-853
33. Wong W.S., Wahl A.F., Yuan P.M., Arai N., Pearson B.E., Arai K., Korn D., Hunkapiller W., Wang T.S.F. Human DNA Polymerase α gene expression is cell proliferation dependent and its primary structure is similar to both prokaryotic and eukaryotic replicative DNA polymerase. EMBO J. 7:1988;7-47
34. Choi Y., et al. Demeter, a DNA glycosylase domain protein is required for endosperm gene imprinting and seed viability in Arabidopsis. Cell. 110:2002;33-42
35. Knetsch M.L., Wang M., Jagalska-Snaar B.E., Dijkstra-Heimovaara S. Abscisic acid induces mitogen-activation in barley aleurone protoplasts. Plant Cell. 8:1996;1061-1067
36. Nowak R., Woszezynski M., Siedlecki J.A. Changes in the DNA polymerase beta gene expression during development of lung, brain and testis suggest an involvement of the enzyme in DNA recombination. Exp. Cell Res. 191:1990;51-56
37. Alcivar A.A., Hake L.F., Hecht N.B. DNA polymerase-beta and poly (ADP) ribose polymerase mRNAs are differentially expressed during the development of male germinal cells. Biol. Reprod. 46:1992;201-207
38. Plug H.W., Clairmont C.A., Sapi E., Ashley T., Sweasy J.B. Evidence for a role for DNA polymerase beta in mammalian meiosis. Proc. Natl. Acad. Sci. USA. 94:1997;1327-1331
39. Podlutsky A.J., Dianova I.I., Wilson S.H., Bohr V.A., Dianov G.L. DNA synthesis and dRPase activities of polymerase beta are both essential for single nucleotide patch base excision repair in mammalian cell extract. Biochemistry. 40:2001;809-813
40. Sancar A. DNA Excision Repair. Annu. Rev. Biochem. 65:1996;43-81
41. Memisoglu A., Samson L. Base excision repair in yeast and mammalian. Mutat. Res. 451:2000;39-51
42. Li A., Schuermann D., Gallego F., Kovalchuk I., Tinland B. Repair of damaged DNA by Arabidopsis cell extract. Plant Cell. 14:2002;263-273
43. Vonarx E.J., Mitchell H.L., Karthikeyan R., Chatterjee I., Kunz B.A. DNA repair in higher plants. Mutat. Res. 400:1998;187-200
44. Britt A.B. Molecular genetics of DNA repair in higher plants. Trends Plant Sci. 4:1999;20-25
45. Talpaert-Borle M., Liuzzi M. Base-excision repair in carrot cells. Partial purification and characterization of uracil-DNA glycosylase and apurinic/apyrimidinic endodeoxyribonuclease. Eur. J. Biochem. 124:1982;435-444
46. Santerre A., Britt A.B. Cloning of a 3-methyladenine-DNA glycosylase from Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA. 91:1994;2240-2244
47. Montero L.M., Filipski J., Gil P., Capel J., Martinez-Zapater J.M., Salinas J. The distribution of 5-methylcytosine in the nuclear genome of plants. Nucleic Acids Res. 25:1992;3207-3210
48. E.C. Friedberg, DNA Repair, W.H. Freeman NY, 1985