Phylogenetic analysis of gastric and enterohepatic Helicobacter species based on partial HSP60 gene sequences

International Journal of Systematic and Evolutionary Microbiology

Volumn 54, Issue 3, 2004, Pages 753-758

  Mikkonen, Tiina P ^a   Kärenlampi, Raunin I ^a   Hänninen, Marja Liisa ^a  

^a UNIVERSITY OF HELSINKI   (Finland)

Author keywords

[No Author keywords available]

Indexed keywords

HEAT SHOCK PROTEIN 60; RIBOSOME RNA; RNA 16S;

ARTICLE; BACTERIAL STRAIN; CELL STRUCTURE; ENTEROHEPATIC CIRCULATION; EVOLUTION; GENE SEQUENCE; GENUS; GRAM NEGATIVE BACTERIUM; HELICOBACTER; HELICOBACTER BIZZOZERONII; HELICOBACTER FELIS; HELICOBACTER SALOMONIS; MARKER GENE; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; SPECIES IDENTIFICATION; STOMACH; TAXONOMY;

ANIMALS; BACTERIAL PROTEINS; BASE SEQUENCE; CHAPERONIN 60; DIGESTIVE SYSTEM; DNA, BACTERIAL; GENES, BACTERIAL; HELICOBACTER; HUMANS; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMERASE CHAIN REACTION; SPECIES SPECIFICITY;

FELIS; FLEXISPIRA; HELICOBACTER; HELICOBACTER BIZZOZERONII; HELICOBACTER FELIS; HELICOBACTER SALOMONIS; PROTEOBACTERIA;

EID: 2942665966     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.02839-0     Document Type: Article

References (33)

1. Bryner, J. H., Richie, A. E., Pollet, L., Kirkbridge, C. A. & Collins, J. E. (1987). Experimental infection and abortion of pregnant guinea pigs with a unique spirillum-like bacterium isolated from aborted ovine fetuses. Am J Vet Res 48, 91-95.
2. Dewhirst, F. E., Fox, J. G., Mendes, E. N., Paster, B. J., Gates, C. E., Kirkbride, C. A. & Eaton, K. A. (2000a). 'Flexispira rappini' strains represent at least 10 Helicobacter taxa. Int J Syst Evol Microbiol 50, 1781-1787.
3. Dewhirst, F. E., Fox, J. G. & On, S. L. W. (2000b). Recommended minimal standards for describing new species of the genus Helicobacter. Int J Syst Evol Microbiol 50, 2231-2237.
4. Eckloff, B. W., Podzorski, R. P., Kline, B. C. & Cockerill, F. R., III (1994). A comparison of 16S ribosomal DNA sequences from five isolates of Helicobacter pylori. Int J Syst Bacteriol 44, 320-323.
5. Fink, A. L. (1999). Chaperone-mediated protein folding. Physiol Rev 79, 425-449.
6. Fox, J. G., Correa, P., Taylor, N. S., Lee, A., Otto, G., Murphy, J. C. & Rose, R. (1990). Helicobacter mustelae-associated gastritis in ferrets. An animal model of Helicobacter pylori gastritis in humans. Gastroenterology 99, 352-361.
7. Fox, J. G., Yan, L. L., Dewhirst, F. E., Paster, B. J., Shames, B., Murphy, J. C., Hayward, A., Belcher, J. C. & Mendes, E. N. (1995). Helicobacter bilis sp. nov., a novel Helicobacter species isolated from bile, livers, and intestines of aged, inbred mice. J Clin Microbiol 33, 445-454.
8. Goh, S. H., Potter, S., Wood, J. O., Hemmingsen, S. M., Reynolds, R. P. & Chow, A. W. (1996). HSP60 gene sequences as universal targets for microbial species identification: studies with coagulase-negative staphylococci. J Clin Microbiol 34, 818-823.
9. Gueneau, P. & Loiseaux-De Goër, S. (2002). Helicobacter: molecular phylogeny and the origin of gastric colonization in the genus. Infect Genet Evol 1, 215-223.
10. Hänninen, M.-L., Happonen, I., Saari, S. & Jalava, K. (1996). Culture and characteristics of Helicobacter bizzozeronii, a new canine gastric Helicobacter sp. Int J Syst Bacteriol 46, 160-166.
11. Hänninen, M.-L., Utriainen, M., Happonen, I. & Dewhirst, F. E. (2003). Helicobacter sp. flexispira 16S rDNA taxa 1, 4 and 5 and Finnish porcine Helicobacter isolates are members of the species Helicobacter trogontum (taxon 6). Int J Syst Evol Microbiol 53, 425-433.
12. Hurtado, A. & Owen, R. J. (1997). A rapid identification scheme for Helicobacter pylori and other species of Helicobacter based on 23S rRNA gene polymorphism. Syst Appl Microbiol 20, 222-231.
13. Jalava, K., Kaartinen, M., Utriainen, M., Happonen, I. & Hänninen, M.-L. (1997). Helicobacter salomonis sp. nov., a canine gastric Helicobacter sp. related to Helicobacter felis and Helicobacter bizzozeronii. Int J Syst Bacteriol 47, 975-982.
14. Jalava, K., On, S. L. W., Vandamme, P. A. R., Happonen, I., Sukura, A. & Hänninen, M.-L. (1998). Isolation and identification of Helicobacter spp. from canine and feline gastric mucosa. Appl Environ Microbiol 64, 3998-4006.
15. Jalava, K., On, S., Harrington, C. S., Andersen, L., Hänninen, M.-L. & Vandamme, P. (2001). A cultured strain of "Helicobacter heilmannii," a human gastric pathogen identified as H. bizzozeronii: evidence for zoonotic potential of Helicobacter. Emerg Infect Dis 7, 1036-1038.
16. Jian, W., Zhu, L. & Dong, X. (2001). New approach to phylogenetic analysis of the genus Bifidobacterium based on partial HSP60 gene sequences. Int J Syst Evol Microbiol 51, 1633-1638.
17. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
18. Kostia, S., Veijalainen, P., Hirvi, U. & Hänninen, M.-L. (2003). Cytolethal distending toxin B gene (cdtB) homologues in taxa 2, 3 and 8 and in six canine isolates of Helicobacter sp. flexispira. J Med Microbiol 52, 103-108.
19. Kwok, A. Y. C. & Chow, A. W. (2003). Phylogenetic study of Staphylococcus and Macrococcus species based on partial hsp60 gene sequences. Int J Syst Evol Microbiol 53, 87-92.
20. Maggi Solcà, N., Bernasconi, M. V., Valsangiacomo, C., Van Doorn, L.-J. & Piffaretti, J.-C. (2001). Population genetics of Helicobacter pylori in the southern part of Switzerland analysed by sequencing of four housekeeping genes (atpD, glnA, scoB and recA), and by vacA, cagA, iceA and IS605 genotyping. Microbiology 147, 1693-1707.
21. Mendes, E. N., Queiroz, D. M. M., Dewhirst, F. E., Paster, B. J., Moura, S. B. & Fox, J. G. (1996). Helicobacter trogontum sp. nov., isolated from the rat intestine. Int J Syst Bacteriol 46, 916-921.
22. On, S. L. W. (11996). identification methods for campylobacters, helicobacters, and related organisms. Clin Microbiol Rev 9, 405-422.
23. On, S. L. W. (2001). Taxonomy of Campylobacter, Arcobacter, Helicobacter and related bacteria: current status, future prospects and immediate concerns. J Appl Microbiol 90, 1S-15S.
24. Paster, B. J., Lee, A., Fox, J. G., Dewhirst, F. E., Tordoff, L. A., Fraser, G. J., O'Rourke, J. L., Taylor, N. S. & Ferrero, R. (1991). Phylogeny of Helicobacter felis sp. nov., Helicobacter mustelae, and related bacteria. Int J Syst Bacteriol 41, 31-38.
25. Patterson, M. M., Schrenzel, M. D., Feng, Y., Xu, S., Dewhirst, F. E., Paster, B. J., Thibodeau, S. A., Versalovic, J. & Fox, J. G. (2000). Helicobacter aurati sp. nov., a urease-positive Helicobacter species cultured from gastrointestinal tissues of Syrian hamsters. J Clin Microbiol 38, 3722-3728.
26. Pitcher, D. G., Saunders, N. A. & Owen, R. J. (1989). Rapid extraction of bacterial genomic DNA with guanidium thiocyanate. Lett Appl Microbiol 8, 151-156.
27. Rusanganwa, E., Singh, B. & Gupta, R. S. (1992). Cloning of HSP60 (GroEL) operon from Clostridium perfringens using a polymerase chain reaction based approach. Biochim Biophys Acta 1130, 90-94.
28. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
29. Segal, G. & Ron, E. Z. (1996). Regulation and organization of the groE and dnaK operons in Eubacteria. FEMS Microbiol Lett 138, 1-10.
30. Shen, Z., Feng, Y. & Fox, J. G. (2000). Identification of enterohepatic Helicobacter species by restriction fragment-length polymorphism analysis of the 16S rRNA gene. Helicobacter 5, 121-128.
31. Solnick, J. V. & Schauer, D. B. (2001). Emergence of diverse Helicobacter species in the pathogenesis of gastric and enterohepatic diseases. Clin Microbiol Rev 14, 59-97.
32. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
33. Vandamme, P., Harrington, C. S., Jalava, K. & On, S. L. (2000). Misidentifying helicobacters: the Helicobacter cinaedi example. J Clin Microbiol 38, 2261-2266.