Sphingomonas yabuuchiae sp. nov. and Brevundimonas nasdae sp. nov., isolated from Russian space laboratory Mir

International Journal of Systematic and Evolutionary Microbiology

Volumn 54, Issue 3, 2004, Pages 819-825

  Li, Ying ^a   Kawamura, Yoshiaki ^a   Fujiwara, Nagatoshi ^b   Naka, Takashi ^b   Liu, Hongsheng ^a   Huang, Xinxiang ^a   Kobayashi, Kazuo ^b   Ezaki, Takayuki ^a  

^a GIFU UNIVERSITY   (Japan)

^b OSAKA CITY UNIVERSITY GRADUATE SCHOOL OF MEDICINE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

DNA 16S; RIBOSOME DNA;

ARTICLE; BACTERIAL STRAIN; BACTERIUM; BACTERIUM ISOLATION; BREVUNDIMONAS AURANTIACA; BREVUNDIMONAS INTERMEDIA; BREVUNDIMONAS NASDAE; BREVUNDIMONAS VESICULARIS; CONTROLLED STUDY; DNA DNA HYBRIDIZATION; GENE CLUSTER; GENOTYPE; GRAM NEGATIVE BACTERIUM; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; RUSSIAN FEDERATION; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; SPECIES DIFFERENTIATION; SPECIES IDENTIFICATION; SPHINGOMONAS; SPHINGOMONAS PARAPAUCIMOBILIS; SPHINGOMONAS PAUCIMOBILIS; SPHINGOMONAS ROSEIFLAVA; SPHINGOMONAS SANGUINIS; SPHINGOMONAS YABUUCHIAE; ZYMOMONAS;

FLIGHT EXPERIMENT; LONG DURATION; MANNED; MIR PROJECT;

AIR MICROBIOLOGY; BASE COMPOSITION; CAULOBACTERACEAE; DNA, BACTERIAL; DNA, RIBOSOMAL; HUMANS; MOLECULAR SEQUENCE DATA; PHENOTYPE; PHYLOGENY; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; RUSSIA; SPACE FLIGHT; SPACECRAFT; SPHINGOMONAS;

BREVUNDIMONAS; BREVUNDIMONAS AURANTIACA; BREVUNDIMONAS INTERMEDIA; BREVUNDIMONAS NASDAE; BREVUNDIMONAS VESICULARIS; SPHINGOMONAS; SPHINGOMONAS PARAPAUCIMOBILIS; SPHINGOMONAS PAUCIMOBILIS; SPHINGOMONAS ROSEIFLAVA; SPHINGOMONAS SANGUINIS; SPHINGOMONAS YABUUCHIAE;

EID: 2942661801     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.02829-0     Document Type: Article

References (21)

1. Abraham, W.-R., Strömpl, C., Meyer, H. & 8 other authors (1999). Phylogeny and polyphasic taxonomy of Caulobacter species. Proposal of Maricaulis gen. nov. with Maricaulis maris (Poindexter) comb. nov. as the type species, and emended description of the genera Brevundimonas and Caulobactcr. Int J Syst Bacteriol 49, 1053-1073.
2. Denner, E. B. M., Paukner, S., Kämpfer, P., Moore, E. R. B., Abraham, W.-R., Busse, H.-J., Wanner, G. & Lubitz, W. (2001). Sphingomonas pituitosa sp. nov., an exopolysaccharide-producing bacterium that secrets an unusual type of sphingan. Int J Syst Evol Microbiol 51, 827-841.
3. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
4. Ezaki, T., Saidi, S. M., Liu, S. L., Hashimoto, Y., Yamamoto, H. & Yabuuchi, E. (1990). Rapid procedure to determine the DNA base composition from small amounts of Gram-positive bacteria. FEMS Microbiol Lett 55, 127-130.
5. Ezaki, T., Li, N., Hashimoto, Y., Miura, H. & Yamamoto, H. (1994). 16S ribosomal DNA sequences of anaerobic cocci and proposal of Ruminococcus hansenii comb. nov. and Ruminococcus productus comb. nov. Int J Syst Bacteriol 44, 130-136.
6. Garrity, G. M. & Holt, J. G. (2001). The road map to the Manual. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 1, pp. 119-166. Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer.
7. Grimont, P. A. D. (1999). Taxonomy and classification of bacteria. In Manual of Clinical Microbiology, 7th edn, pp. 249-259. Edited by P. R. Murray, E. J. Baron, M. A. Pfaller, F. C. Tenover & R. H. Yolken. Washington, DC: American Society for Microbiology.
8. Kämpfer, P. & Kroppenstedt, R. M. (1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989-1005.
9. Kämpfer, P., Denner, E. B. M., Meyer, S., Moore, E. R. B. & Busse, H.-J. (1997). Classification of "Pseudomonas azotocolligans" Anderson 1955, 132, in the genus Sphingomonas as Sphingomonas trueperi sp. nov. Int J Syst Bacteriol 47, 577-583.
10. Kawamura, Y., Li, Y., Liu, H., Huang, X., Li, Z. & Ezaki, T. (2001). Bacterial population in Russian space station "Mir". Microbiol Immunol 45, 819-828.
11. Page, R. D. M. (1996). TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12, 357-358.
12. Pearson, W. R. & Lipman, D. J. (1988). Improved tools for biological sequence comparison. Proc Natl Acad Sci U S A 85, 2444-2448.
13. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
14. Segers, P., Vancanneyt, M., Pot, B., Torck, U., Hoste, B., Dewettinck, D., Falsen, E., Kersters, K. & De Vos, P. (1994). Classification of Pseudomonas diminuta Leifson and Hugh 1954 and Pseudomonas vesicularis Büsing, Döll, and Freytag 1953 in Brevundimonas gen. nov. as Brevundimonas diminuta comb. nov. and Brevundimonas vesicularis comb. nov., respectively. Int J Syst Bacteriol 44, 499-510.
15. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
16. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequencing weighing, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
17. Wayne, L. G., Brenner, D. J., Colwell, R. R. & 9 other authors (1987). Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
18. Yabuuchi, E., Yano, I., Oyaizu, H., Hashimoto, Y., Ezaki, T. & Yamamoto, H. (1990). Proposals of Sphingomonas paucimobilis gen. nov. and comb. nov., Sphingomonas parapaucimobilis sp. nov., Sphingomonas yanoikuyae sp. nov., Sphingomonas adhaesiva sp. nov., Sphingomonas capsulata comb. nov., and two genospecies of the genus Sphingomonas. Microbiol Immunol 34, 99-119.
19. Yabuuchi, E., Kosako, Y., Fujiwara, N., Naka, T., Matsunaga, L, Ogura, H. & Kobayashi, K. (2002). Emendation of the genus Sphingomonas Yabuuchi et al. 1990 and junior objective synonymy of the species of three genera, Sphingobium, Novosphingobium and Sphingopyxis, in conjunction with Blastomonas ursincola. Int J Syst Evol Microbiol 52, 1485-1496.
20. Yano, I., Yamada, Y. & Suzuki, K. I. (1987). Analysis of bacterial ingredients. In Bacterial Identification in Accordance with Recent Taxonomy: Use of Phenotypic, Chemical, and Genetic Analysis, pp. 41-85. Edited by E. Yabuuchi, T. Ezaki, Y. H. Park, H. Sugawara, K. I. Suzuki, Y. Yamada, H. Yamanoto & I. Yano. Tokyo: Saikon Publications.
21. Yun, N. R., Shin, Y. K., Hwang, S. Y., Kuraishi, H., Sugiyama, J. & Kawahara, K. (2000). Chemotaxonomic and phylogenetic analyses of Sphingomonas strains isolated from ears of plants in the family Gramineae and a proposal of Sphingomonas roseoflava sp. nov. J Gen Appl Microbiol 46, 9-18.