-
1
-
-
0033994214
-
Evolution of alpha 2-fucosyltransferase genes in primates: Relation between an intronic Alu-Y element and red cell expression of ABH antigens
-
Apoil PA, Roubinet F, Despiau S, Mollicone R, Oriol R, Blancher A (2000) Evolution of alpha 2-fucosyltransferase genes in primates: Relation between an intronic Alu-Y element and red cell expression of ABH antigens. Mol Biol Evol 17:337-351
-
(2000)
Mol Biol Evol
, vol.17
, pp. 337-351
-
-
Apoil, P.A.1
Roubinet, F.2
Despiau, S.3
Mollicone, R.4
Oriol, R.5
Blancher, A.6
-
2
-
-
0027485657
-
Sequence comparison of putative regulatory DNA of the 5′ flanking region of the myeloperoxidase gene in normal and leukemic bone marrow cells
-
Austin GE, Lam L, Zaki SR, et al. (1993) Sequence comparison of putative regulatory DNA of the 5′ flanking region of the myeloperoxidase gene in normal and leukemic bone marrow cells. Leukemia 7:1445-1450
-
(1993)
Leukemia
, vol.7
, pp. 1445-1450
-
-
Austin, G.E.1
Lam, L.2
Zaki, S.R.3
-
3
-
-
0036250811
-
Alu repeats and human genomic diversity
-
Batzer MA, Deininger PL (2002) Alu repeats and human genomic diversity. Nat Rev Genet 3:370-379
-
(2002)
Nat Rev Genet
, vol.3
, pp. 370-379
-
-
Batzer, M.A.1
Deininger, P.L.2
-
4
-
-
0030052666
-
Standardized nomenclature for Alu repeats
-
Batzer MA, Deininger PL, Hellmann-Blumberg U, Jurka J, Labuda D, Rubin CM, Schmid CW, Zietkiewicz E, Zuckerkandl E (1996) Standardized nomenclature for Alu repeats. J Mol Evol 42:3-6
-
(1996)
J Mol Evol
, vol.42
, pp. 3-6
-
-
Batzer, M.A.1
Deininger, P.L.2
Hellmann-Blumberg, U.3
Jurka, J.4
Labuda, D.5
Rubin, C.M.6
Schmid, C.W.7
Zietkiewicz, E.8
Zuckerkandl, E.9
-
5
-
-
0242418246
-
Phylogenetic shadowing of primate sequences to find functional regions of the human genome
-
Boffelli D, McAuliffe J, Ovcharenko D, Lewis KD, Ovcharenko I, Pachter L, Rubin EM (2003) Phylogenetic shadowing of primate sequences to find functional regions of the human genome. Science 299:1391-1394
-
(2003)
Science
, vol.299
, pp. 1391-1394
-
-
Boffelli, D.1
McAuliffe, J.2
Ovcharenko, D.3
Lewis, K.D.4
Ovcharenko, I.5
Pachter, L.6
Rubin, E.M.7
-
6
-
-
0027465865
-
Involvement of Alu sequences in the cell-specific regulation of transcription of the gamma chain of Fc and T cell receptors
-
Brini AT, Lee GM, Kinet JP (1993) Involvement of Alu sequences in the cell-specific regulation of transcription of the gamma chain of Fc and T cell receptors. J Biol Chem 268:1335-1361
-
(1993)
J Biol Chem
, vol.268
, pp. 1335-1361
-
-
Brini, A.T.1
Lee, G.M.2
Kinet, J.P.3
-
7
-
-
0028340205
-
Evidence that most human Alu sequences were inserted in a process that ceased about 30 million years ago
-
Britten RJ (1994) Evidence that most human Alu sequences were inserted in a process that ceased about 30 million years ago. Proc Natl Acad Sci USA 91:6148-6150
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 6148-6150
-
-
Britten, R.J.1
-
8
-
-
2942696640
-
How significant is 98.5% 'junk' in mammalian genomes?
-
Brosius J (2003) How significant is 98.5% 'junk' in mammalian genomes? Bioinformatics 19:ii35
-
(2003)
Bioinformatics
, vol.19
-
-
Brosius, J.1
-
9
-
-
0026447994
-
On "nomenclature": A comprehensive (and respectful) taxonomy for pseudogenes and other "junk DNA."
-
Brosius J, Gould SJ (1992) On "nomenclature": A comprehensive (and respectful) taxonomy for pseudogenes and other "junk DNA." Proc Natl Acad Sci USA 89:10706-10710
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 10706-10710
-
-
Brosius, J.1
Gould, S.J.2
-
10
-
-
0035130163
-
Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees
-
Chen FC, Li WH (2001) Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees. Am J Hum Genet 68:444-456
-
(2001)
Am J Hum Genet
, vol.68
, pp. 444-456
-
-
Chen, F.C.1
Li, W.H.2
-
11
-
-
0035151439
-
Recent insertion of an Alu element within a polymorphic human-specific Alu insertion
-
Comas D, Plaza S, Calafell F, Sajantila A, Bertranpetit J (2001) Recent insertion of an Alu element within a polymorphic human-specific Alu insertion. Mol Biol Evol 18:85-88
-
(2001)
Mol Biol Evol
, vol.18
, pp. 85-88
-
-
Comas, D.1
Plaza, S.2
Calafell, F.3
Sajantila, A.4
Bertranpetit, J.5
-
12
-
-
0024342297
-
Cytosine methylation and the fate of CpG dinucleotides in vertebrate genomes
-
Cooper DN, Krawczak M (1989) Cytosine methylation and the fate of CpG dinucleotides in vertebrate genomes. Hum Genet 83:181-188
-
(1989)
Hum Genet
, vol.83
, pp. 181-188
-
-
Cooper, D.N.1
Krawczak, M.2
-
13
-
-
0000122573
-
PHYLIP Phylogeny inference package (version 3.2)
-
Felsenstein J (1989) PHYLIP Phylogeny inference package (version 3.2). Cladistic 5:164-166
-
(1989)
Cladistic
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
14
-
-
0031035848
-
Structural and functional characterization of the human alpha3 nicotinic subunit gene promoter
-
Fornasari D, Battaglioli E, Flora A, Terzano S, Clementi F (1997) Structural and functional characterization of the human alpha3 nicotinic subunit gene promoter. Mol Pharmacol 51:250-261
-
(1997)
Mol Pharmacol
, vol.51
, pp. 250-261
-
-
Fornasari, D.1
Battaglioli, E.2
Flora, A.3
Terzano, S.4
Clementi, F.5
-
15
-
-
0028972237
-
Identification and characterization of a kappa B/Rel binding site in the regulatory region of the amyloid precursor protein gene
-
Grilli M, Ribola M, Alberici A, Valerio A, Memo M, Spano P (1995) Identification and characterization of a kappa B/Rel binding site in the regulatory region of the amyloid precursor protein gene. J Biol Chem 270:26774-26777
-
(1995)
J Biol Chem
, vol.270
, pp. 26774-26777
-
-
Grilli, M.1
Ribola, M.2
Alberici, A.3
Valerio, A.4
Memo, M.5
Spano, P.6
-
16
-
-
0027379052
-
Identification and characterization of an Alu-containing, T-cell-specific enhancer located in the last intron of the human CD8 alpha gene
-
Hambor JE, Mennone J, Coon ME, Hanke JH, Kavathas P (1993) Identification and characterization of an Alu-containing, T-cell-specific enhancer located in the last intron of the human CD8 alpha gene. Mol Cell Biol 13:7056-7070
-
(1993)
Mol Cell Biol
, vol.13
, pp. 7056-7070
-
-
Hambor, J.E.1
Mennone, J.2
Coon, M.E.3
Hanke, J.H.4
Kavathas, P.5
-
17
-
-
0030045979
-
The age of Alu subfamilies
-
Kapitonov V, Jurka J (1996) The age of Alu subfamilies. J Mol Evol 42:59-65
-
(1996)
J Mol Evol
, vol.42
, pp. 59-65
-
-
Kapitonov, V.1
Jurka, J.2
-
18
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-120
-
(1980)
J Mol Evol
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
20
-
-
0024542108
-
Characterization of the 5′-end region and the first two exons of the beta-protein precursor gene
-
La Fauci G, Lahiri DK, Salton SR, Robakis NK (1989) Characterization of the 5′-end region and the first two exons of the beta-protein precursor gene. Biochem Biophys Res Commun 159:297-304
-
(1989)
Biochem Biophys Res Commun
, vol.159
, pp. 297-304
-
-
La Fauci, G.1
Lahiri, D.K.2
Salton, S.R.3
Robakis, N.K.4
-
21
-
-
0025967258
-
The promoter activity of the gene encoding Alzheimer beta-amyloid precursor protein (APP) is regulated by two blocks of upstream sequences
-
Lahiri DK, Robakis NK (1991) The promoter activity of the gene encoding Alzheimer beta-amyloid precursor protein (APP) is regulated by two blocks of upstream sequences. Brain Res Mol Brain Res 9:253-257
-
(1991)
Brain Res Mol Brain Res
, vol.9
, pp. 253-257
-
-
Lahiri, D.K.1
Robakis, N.K.2
-
22
-
-
0033050955
-
Promoter activity of the beta-amyloid precursor protein gene is negatively modulated by an upstream regulatory element
-
Lahiri DK, Nail C, Ge YW (1999) Promoter activity of the beta-amyloid precursor protein gene is negatively modulated by an upstream regulatory element. Brain Res Mol Brain Res 71:32-41
-
(1999)
Brain Res Mol Brain Res
, vol.71
, pp. 32-41
-
-
Lahiri, D.K.1
Nail, C.2
Ge, Y.W.3
-
23
-
-
0034608110
-
Analysis of the 5′-flanking region of the beta-amyloid precursor protein gene that contributes to increased promoter activity in differentiated neuronal cells
-
Lahiri DK, Song W, Ge YW (2000) Analysis of the 5′-flanking region of the beta-amyloid precursor protein gene that contributes to increased promoter activity in differentiated neuronal cells. Brain Res Mol Brain Res 77:185-198
-
(2000)
Brain Res Mol Brain Res
, vol.77
, pp. 185-198
-
-
Lahiri, D.K.1
Song, W.2
Ge, Y.W.3
-
24
-
-
0038701605
-
The birth of an alternatively spliced exon: 3′ Splice-site selection in Alu exons
-
Lev-Maor G, Sorek R, Shomron N, Ast G (2003) The birth of an alternatively spliced exon: 3′ splice-site selection in Alu exons. Science 300:1288-1291
-
(2003)
Science
, vol.300
, pp. 1288-1291
-
-
Lev-Maor, G.1
Sorek, R.2
Shomron, N.3
Ast, G.4
-
25
-
-
0035865239
-
Evolutionary analyses of the human genome
-
Li WH, Gu Z, Wang H, Nekrutenko A (2001) Evolutionary analyses of the human genome. Nature 409:847-849
-
(2001)
Nature
, vol.409
, pp. 847-849
-
-
Li, W.H.1
Gu, Z.2
Wang, H.3
Nekrutenko, A.4
-
26
-
-
0038813684
-
Not junk after all
-
Makalowski W (2003) Not junk after all. Science 300:1246-1247
-
(2003)
Science
, vol.300
, pp. 1246-1247
-
-
Makalowski, W.1
-
27
-
-
0034837435
-
Sequence variability of a human pseudogene
-
Martinez-Arias R, Calafell F, Mateu E, Comas D, Andres A, Bertranpetit J (2001) Sequence variability of a human pseudogene. Genome Res 11:1071-1085
-
(2001)
Genome Res
, vol.11
, pp. 1071-1085
-
-
Martinez-Arias, R.1
Calafell, F.2
Mateu, E.3
Comas, D.4
Andres, A.5
Bertranpetit, J.6
-
28
-
-
0029092218
-
Origin of a negative calcium response element in an ALU-repeat: Implications for regulation of gene expression by extracellular calcium
-
McHaffie GS, Ralston SH (1995) Origin of a negative calcium response element in an ALU-repeat: Implications for regulation of gene expression by extracellular calcium. Bone 17:11-14
-
(1995)
Bone
, vol.17
, pp. 11-14
-
-
McHaffie, G.S.1
Ralston, S.H.2
-
29
-
-
0029129326
-
Identification of a new subclass of Alu DNA repeats which can function as estrogen receptor-dependent transcriptional enhancers
-
Norris J, Fan D, Aleman C, Marks JR, Futreal PA, Wiseman RW, Iglehart JD, Deininger PL, McDonnell DP (1995) Identification of a new subclass of Alu DNA repeats which can function as estrogen receptor-dependent transcriptional enhancers. J Biol Chem 270:22777-22782
-
(1995)
J Biol Chem
, vol.270
, pp. 22777-22782
-
-
Norris, J.1
Fan, D.2
Aleman, C.3
Marks, J.R.4
Futreal, P.A.5
Wiseman, R.W.6
Iglehart, J.D.7
Deininger, P.L.8
McDonnell, D.P.9
-
30
-
-
0029999154
-
An Alu element in the myeloperoxidase promoter contains a composite SP1-thyroid hormone-retinoic acid response element
-
Piedrafita FJ, Molander RB, Vansant G, Orlova EA, Pfahl M, Reynolds WF (1996) An Alu element in the myeloperoxidase promoter contains a composite SP1-thyroid hormone-retinoic acid response element. J Biol Chem 271:14412-14420
-
(1996)
J Biol Chem
, vol.271
, pp. 14412-14420
-
-
Piedrafita, F.J.1
Molander, R.B.2
Vansant, G.3
Orlova, E.A.4
Pfahl, M.5
Reynolds, W.F.6
-
31
-
-
0026507460
-
The expression of the amyloid precursor protein (APP) is regulated by two GC-elements in the promoter
-
Pollwein P, Masters CL, Beyreuther K (1992) The expression of the amyloid precursor protein (APP) is regulated by two GC-elements in the promoter. Nucleic Acids Res 20:63-68
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 63-68
-
-
Pollwein, P.1
Masters, C.L.2
Beyreuther, K.3
-
32
-
-
0026806977
-
The amyloid beta-protein precursor promoter. A region essential for transcriptional activity contains a nuclear factor binding domain
-
Quitschke WW, Goldgaber D (1992) The amyloid beta-protein precursor promoter. A region essential for transcriptional activity contains a nuclear factor binding domain. J Biol Chem 267:17362-17368
-
(1992)
J Biol Chem
, vol.267
, pp. 17362-17368
-
-
Quitschke, W.W.1
Goldgaber, D.2
-
33
-
-
0034535678
-
Alu elements and the human genome
-
Rowold DJ, Herrera RJ (2000) Alu elements and the human genome. Genetica 108:57-72
-
(2000)
Genetica
, vol.108
, pp. 57-72
-
-
Rowold, D.J.1
Herrera, R.J.2
-
34
-
-
0032972599
-
DnaSP version 3: An integrated program for molecular population genetics and molecular evolution analysis
-
Rozas J, Rozas R (1999) DnaSP version 3: An integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15:174-175
-
(1999)
Bioinformatics
, vol.15
, pp. 174-175
-
-
Rozas, J.1
Rozas, R.2
-
35
-
-
0031049003
-
Molecular phylogeny of the hominoids: Inferences from multiple independent DNA sequence data sets
-
Ruvolo M (1997) Molecular phylogeny of the hominoids: Inferences from multiple independent DNA sequence data sets. Mol Biol Evol 14:248-265
-
(1997)
Mol Biol Evol
, vol.14
, pp. 248-265
-
-
Ruvolo, M.1
-
36
-
-
0024075097
-
The promoter of Alzheimer's disease amyloid A4 precursor gene
-
Salbaum JM, Weidemann A, Lemaire HG, Masters CL, Beyreuther K (1988) The promoter of Alzheimer's disease amyloid A4 precursor gene. EMBO J 7:2807-2813
-
(1988)
EMBO J
, vol.7
, pp. 2807-2813
-
-
Salbaum, J.M.1
Weidemann, A.2
Lemaire, H.G.3
Masters, C.L.4
Beyreuther, K.5
-
37
-
-
0032517141
-
Molecular cloning of the promoter of the gene encoding the Rhesus monkey beta-amyloid precursor protein: Structural characterization and a comparative study with other species
-
Song W, Lahiri DK (1998) Molecular cloning of the promoter of the gene encoding the Rhesus monkey beta-amyloid precursor protein: Structural characterization and a comparative study with other species. Gene 217:151-164
-
(1998)
Gene
, vol.217
, pp. 151-164
-
-
Song, W.1
Lahiri, D.K.2
-
38
-
-
0031262514
-
Alu insertion polymorphisms and human evolution: Evidence for a larger population size in Africa
-
Stoneking M, Fontius JJ, Clifford SL, Soodyall H, Arcot SS, Saha N, Jenkins T, Tahir MA, Deininger PL, Batzer MA (1997) Alu insertion polymorphisms and human evolution: evidence for a larger population size in Africa. Genome Res 7:1061-1071
-
(1997)
Genome Res
, vol.7
, pp. 1061-1071
-
-
Stoneking, M.1
Fontius, J.J.2
Clifford, S.L.3
Soodyall, H.4
Arcot, S.S.5
Saha, N.6
Jenkins, T.7
Tahir, M.A.8
Deininger, P.L.9
Batzer, M.A.10
-
39
-
-
0029153564
-
The consensus sequence of a major Alu subfamily contains a functional retinoic acid response element
-
Vansant G, Reynolds WF (1995) The consensus sequence of a major Alu subfamily contains a functional retinoic acid response element. Proc Natl Acad Sci USA 92:8229-8233
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 8229-8233
-
-
Vansant, G.1
Reynolds, W.F.2
|