-
1
-
-
0035161543
-
Genomes OnLine Database (GOLD): A monitor of genome projects world-wide
-
Bernal A, Ear U and Kyrpides N: Genomes OnLine Database (GOLD): a monitor of genome projects world-wide. Nucleic Acids Res 2001, 29:126-7.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 126-127
-
-
Bernal, A.1
Ear, U.2
Kyrpides, N.3
-
2
-
-
2942612306
-
-
GOLD: Genomes OnLine Database
-
GOLD: Genomes OnLine Database [http://wit.integratedge nomics.com/GOLD/]
-
-
-
-
3
-
-
0037245984
-
GenBank
-
Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J and Wheeler DL: GenBank. Nucleic Acids Res 2003, 31:23-7.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 23-27
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Wheeler, D.L.5
-
4
-
-
0037255072
-
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2003
-
Boeckmann B, Bairoch A, Apweiler R, Blatter MC, Estreicher A, Gasteiger E, Martin MJ, Michoud K, O'Donovan C, Phan I, Pilbout S and Schneider M: The SWISS-PROT protein sequence database and its supplement TrEMBL in 2003. Nucleic Acids Res 2003, 31:365-70.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 365-370
-
-
Boeckmann, B.1
Bairoch, A.2
Apweiler, R.3
Blatter, M.C.4
Estreicher, A.5
Gasteiger, E.6
Martin, M.J.7
Michoud, K.8
O'Donovan, C.9
Phan, I.10
Pilbout, S.11
Schneider, M.12
-
6
-
-
0030010970
-
Entrez: Molecular biology database and retrieval system
-
Edited by: Doolittle RF. San Diego: Academic Press
-
Schuler GD, Epstein JA, Ohkawa H and Kans JA: Entrez: molecular biology database and retrieval system. In: Methods in Enzymology Volume 266. Edited by: Doolittle RF. San Diego: Academic Press; 1996:141-62.
-
(1996)
Methods in Enzymology
, vol.266
, pp. 141-162
-
-
Schuler, G.D.1
Epstein, J.A.2
Ohkawa, H.3
Kans, J.A.4
-
7
-
-
0033745748
-
gff2ps: Visualizing genomic annotations
-
Abril JF and Guigó R: gff2ps: visualizing genomic annotations. Bioinformatics 2000, 16:743-4.
-
(2000)
Bioinformatics
, vol.16
, pp. 743-744
-
-
Abril, J.F.1
Guigó, R.2
-
8
-
-
0033635022
-
Artemis: Sequence visualization and annotation
-
Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream MA and Barrell B: Artemis: sequence visualization and annotation. Bioinformatics 2000, 16:944-5.
-
(2000)
Bioinformatics
, vol.16
, pp. 944-945
-
-
Rutherford, K.1
Parkhill, J.2
Crook, J.3
Horsnell, T.4
Rice, P.5
Rajandream, M.A.6
Barrell, B.7
-
9
-
-
0642309748
-
SeqVISTA: A graphical tool for sequence feature visualization and comparison
-
Hu Z, Frith M, Niu T and Weng Z: SeqVISTA: a graphical tool for sequence feature visualization and comparison. BMC Bioinformatics 2003, 4:1.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 1
-
-
Hu, Z.1
Frith, M.2
Niu, T.3
Weng, Z.4
-
10
-
-
2942545933
-
-
NCBI Map Viewer
-
NCBI Map Viewer [http://www.ncbi.nih.gov/mapview/]
-
-
-
-
11
-
-
2942582427
-
-
TIGR Genome Browse
-
TIGR Genome Browse [http://www.tigr.org/tigr-scripts/CMR2/ choose_genome.spl]
-
-
-
-
12
-
-
18444402182
-
The Ensembl genome database project
-
Hubbard T, Barker D, Birney E, Cameron G, Chen Y, Clark L, Cox T, Cuff J, Curwen V, Down T, Durbin R, Eyras E, Gilbert J, Hammond M, Huminiecki L, Kasprzyk A, Lehvaslaiho H, Lijnzaad P, Melsopp C, Mongin E, Pettett R, Pocock M, Potter S, Rust A, Schmidt E, Searle S, Slater G, Smith J, Spooner W, Stabenau A, Stalker J, Stupka E, Ureta-Vidal A, Vastrik I and Clamp M: The Ensembl genome database project. Nucleic Acids Res 2002, 30:38-42.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 38-42
-
-
Hubbard, T.1
Barker, D.2
Birney, E.3
Cameron, G.4
Chen, Y.5
Clark, L.6
Cox, T.7
Cuff, J.8
Curwen, V.9
Down, T.10
Durbin, R.11
Eyras, E.12
Gilbert, J.13
Hammond, M.14
Huminiecki, L.15
Kasprzyk, A.16
Lehvaslaiho, H.17
Lijnzaad, P.18
Melsopp, C.19
Mongin, E.20
Pettett, R.21
Pocock, M.22
Potter, S.23
Rust, A.24
Schmidt, E.25
Searle, S.26
Slater, G.27
Smith, J.28
Spooner, W.29
Stabenau, A.30
Stalker, J.31
Stupka, E.32
Ureta-Vidal, A.33
Vastrik, I.34
Clamp, M.35
more..
-
13
-
-
0037208159
-
The ERGO™ genome analysis and discovery system
-
Overbeek R, Larsen N, Walunas T, D'Souza M, Pusch G, Selkov E Jr, Liolios K, Joukov V, Kaznadzey D, Anderson I, Bhattacharyya A, Burd H, Gardner W, Hanke P, Kapatral V, Mikhailova N, Vasieva O, Osterman A, Vonstein V, Fonstein M, Ivanova N and Kyrpides N: The ERGO™ genome analysis and discovery system. Nucleic Acids Res 2003, 31:164-79.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 164-179
-
-
Overbeek, R.1
Larsen, N.2
Walunas, T.3
D'Souza, M.4
Pusch, G.5
Selkov Jr., E.6
Liolios, K.7
Joukov, V.8
Kaznadzey, D.9
Anderson, I.10
Bhattacharyya, A.11
Burd, H.12
Gardner, W.13
Hanke, P.14
Kapatral, V.15
Mikhailova, N.16
Vasieva, O.17
Osterman, A.18
Vonstein, V.19
Fonstein, M.20
Ivanova, N.21
Kyrpides, N.22
more..
-
14
-
-
0035882573
-
PRED-CLASS: Cascading neural networks for generalized protein classification and genome-wide applications
-
Pasquier C, Promponas VJ and Hamodrakas SJ: PRED-CLASS: cascading neural networks for generalized protein classification and genome-wide applications. Proteins: Structure, Function, and Genetics 2001, 44:361-9.
-
(2001)
Proteins: Structure, Function, and Genetics
, vol.44
, pp. 361-369
-
-
Pasquier, C.1
Promponas, V.J.2
Hamodrakas, S.J.3
-
15
-
-
0032834939
-
An hierarchical artificial neural network system for the classification of transmembrane proteins
-
Pasquier C. and Hamodrakas SJ: An hierarchical artificial neural network system for the classification of transmembrane proteins. Protein Eng 1999, 12:631-4.
-
(1999)
Protein Eng.
, vol.12
, pp. 631-634
-
-
Pasquier, C.1
Hamodrakas, S.J.2
-
16
-
-
0034888209
-
A novel tool for the prediction of transmembrane protein topology based on a statistical analysis of the SwissProt database: The orienTM algorithm
-
Liakopoulos TD, Pasquier C and Hamodrakas SJ: A novel tool for the prediction of transmembrane protein topology based on a statistical analysis of the SwissProt database: the orienTM algorithm. Protein Eng 2001, 14:387-90.
-
(2001)
Protein Eng.
, vol.14
, pp. 387-390
-
-
Liakopoulos, T.D.1
Pasquier, C.2
Hamodrakas, S.J.3
-
17
-
-
0030614959
-
Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites
-
Nielsen H, Engelbrecht J, Brunak S and von Heijne G: Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Eng 1997, 10:1-6.
-
(1997)
Protein Eng.
, vol.10
, pp. 1-6
-
-
Nielsen, H.1
Engelbrecht, J.2
Brunak, S.3
von Heijne, G.4
-
18
-
-
2942610676
-
-
EBI Proteome Analysis Server
-
EBI Proteome Analysis Server [http://www.ebi.ac.uk/proteome/ index.html]
-
-
-
-
19
-
-
2942607479
-
-
Webcutter
-
Webcutter [http://www.firstmarket.com/cutter/cut2.html]
-
-
-
-
20
-
-
0035162592
-
The COG database: New developments in phylogenetic classification of proteins from complete genomes
-
Tatusov RL, Natale DA, Garkavtsev IV, Tatusova TA, Shankavaram UT, Rao BS, Kiryutin B, Galperin MY, Fedorova ND and Koonin EV: The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res 2001, 29:22-28.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 22-28
-
-
Tatusov, R.L.1
Natale, D.A.2
Garkavtsev, I.V.3
Tatusova, T.A.4
Shankavaram, U.T.5
Rao, B.S.6
Kiryutin, B.7
Galperin, M.Y.8
Fedorova, N.D.9
Koonin, E.V.10
-
21
-
-
2942547540
-
-
TIGR, Gene pairs for Methanococcus jannaschii
-
TIGR, Gene pairs for Methanococcus jannaschii [http://www.tigr.org/tigr-scripts/operons/pairs.cgi?taxon_id=57]
-
-
-
-
22
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W and Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25:3389-402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
23
-
-
0035910270
-
Predicting Transmembrane Protein Topology with a Hidden Markov Model: Application to Complete Genomes
-
Krogh A, Larsson B, von Heijne G and Sonnhammer ELL: Predicting Transmembrane Protein Topology with a Hidden Markov Model: Application to Complete Genomes. J Mol Biol 2001, 305:567-80.
-
(2001)
J. Mol. Biol.
, vol.305
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
von Heijne, G.3
Sonnhammer, E.L.L.4
|