Fractionation of peptides and identification of proteins from Saccharomyces cerevisiae in proteomics with the use of reversed-phase capillary liquid chromatography and pI-based approach

Journal of Pharmaceutical and Biomedical Analysis

Volumn 35, Issue 4, 2004, Pages 895-904

  Baczek, Tomasz ^a  

^a MEDICAL UNIVERSITY OF GDANSK   (Poland)

Author keywords

Peptides; Proteomics; Two dimensional separations; Yeast

Indexed keywords

FUNGAL PROTEIN; PEPTIDE;

ACCURACY; AMINO ACID SEQUENCE; ANALYTIC METHOD; ARTICLE; BIOINFORMATICS; CONTROLLED STUDY; DATA BASE; INSTRUMENTATION; ISOELECTRIC FOCUSING; MASS SPECTROMETRY; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEOMICS; REVERSED PHASE LIQUID CHROMATOGRAPHY; SACCHAROMYCES CEREVISIAE; SEPARATION TECHNIQUE; TANDEM MASS SPECTROMETRY; UNINDEXED SEQUENCE;

ANIMALS; CATTLE; CHROMATOGRAPHY, LIQUID; ISOELECTRIC FOCUSING; PEPTIDES; PROTEOMICS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS;

EID: 2942547734     PISSN: 07317085     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jpba.2004.02.032     Document Type: Article

References (34)

1. International Human Genome Sequencing Consortium, Nature 409 (2001) 860-921.
2. Venter J.C., Adams M.D., Myers E.W., Li P.W., Mural R.J., et al. Science. 291:2001;1304-1351
3. Joubert R., Strub J.-M., Zugmeyer S., Kobi D., Carte N., van Dorsselaer A., Boucherie H., Jaquet-Gutfreund L. Electrophoresis. 22:2001;2969-2982
4. Perrot M., Sagliocco F., Mini T., Monribot C., Schneider U., Shevchenko A., Mann M., Jeno P., Boucherie H. Electrophoresis. 20:1999;2280-2298
5. Poutanen M., Salusjarvi L., Ruohonen L., Penttila M., Kalkkinen N. Rapid Commun. Mass Spectrom. 15:2001;1685-1692
6. Salusjarvi L., Poutanen M., Pitkanen J.-P., Koivistoinen H., Aristidou A., Kalkkinen N., Ruohonen L., Penttila M. Yeast. 20:2003;295-314
7. D.C. Liebler, Introduction to Proteomics, Humana Press, Totowa, NJ, 2002.
8. Pandey A., Mann M. Nature. 405:2000;837-846
9. Wehr T. LCGC N. Am. 20:2002;954-962
10. T. Baczek, A. Buciñski, A.R. Ivanov, R. Kaliszan, Anal. Chem. 76 (2004) 1726-1732.
11. Davis M.T., Beierle J., Bures E.T., McGinley M.D., Mort J., Robinson J.H., Spahr C.S., Yu W., Luthy R., Patterson S.D. J. Chromatogr. B. 752:2001;281-291
12. Link A.J., Eng J., Schieltz D.M., Carmack E., Mize G.J., Morris D.R., Garvik B.M., Yates J.R. Jr. Nat. Biotechnol. 17:1999;676-682
13. Opiteck G.J., Lewis K.C., Jorgenson J.W., Anderegg R.J. Anal. Chem. 69:1997;1518-1524
14. Peng J., Elias J.E., Thoreen C.C., Licklider L.J., Gygi S.P. J. Proteome Res. 2:2003;43-50
15. Washburn M.P., Wolters D., Yates J.R. Jr. Nat. Biotechnol. 19:2001;242-247
16. Wagner K., Miliotis T., Marko-Varga G., Bischoff R., Unger K.K. Anal. Chem. 74:2002;809-820
17. Opiteck G.J., Jorgenson J.W., Anderegg R.J. Anal. Chem. 69:1997;2283-2291
18. Lewis K.C., Opiteck G.J., Jorgenson J.W., Sheeley D.M. J. Am. Mass Spectrom. 8:1997;495-500
19. Herbert B., Righetti P.G. Electrophoresis. 21:2000;3639-3648
20. Michel P.E., Reymond F., Arnaud I.L., Josserand J., Girault H.H., Rossier J.S. Electrophoresis. 24:2003;2-11
21. Tan A., Pashkova A., Zang L., Foret F., Karger B.L. Electrophoresis. 23:2002;3599-3607
22. Zuo X., Speicher D.W. Proteomics. 2:2002;58-68
23. T. Baczek, J. Pharm. Biomed. Anal. 34 (2004) 851-860.
24. Shen Y., Berger S.J., Anderson G.A., Smith R.D. Anal. Chem. 72:2000;2154-2159
25. Shen Y., Xiang F., Veenstra T.D., Fung E.N., Smith R.D. Anal. Chem. 71:1999;5348-5353
26. Lubman D.M., Kachman M.T., Wang H., Gong S., Yan F., Hamler R.L., O'Neil K.A., Zhu K., Buchanan N.S., Barder T.J. J. Chromatogr. B. 782:2002;183-196
27. Kang X., Frey D.D. Anal. Chem. 74:2002;1038-1045
28. Kang X., Frey D.D. J. Chromatogr. A. 991:2003;117-128
29. R. Kaliszan, P. Wiczling, M.J. Markuszewski, Anal. Chem. 76 (2004) 749-760.
30. Drott D., Bahairi S., Grabski A. inNovations. 15:2002;14-16
31. http://www.ebi.ac.uk/.
32. Bjellqvist B., Basse B., Ilsen E., Celis J.E. Electrophoresis. 15:1994;529-539
33. http://www.enovatia.com/sequest/.
34. http://genome-www4.stanford.edu/Saccharomyces/SGD/.