ProteoMod: A new tool to quantitate protein post-translational modifications

Proteomics

Volumn 4, Issue 6, 2004, Pages 1672-1683

  Kumar, Yadunanda ^a   Khachane, Amit ^a   Belwal, Mukta ^a   Das, Sanjeev ^a   Somsundaram, Kumar ^a   Tatu, Utpal ^a  

^a INDIAN INSTITUTE OF SCIENCE   (India)

Author keywords

Isoelectric point; Phosphorylation; Post translational modification; Prediction; ProteoMod

Indexed keywords

HEAT SHOCK PROTEIN 20; HEAT SHOCK PROTEIN 27; HEMAGGLUTININ; PROTEIN P53; TUMOR SUPPRESSOR PROTEIN;

ACETYLATION; ALGORITHM; ARTICLE; CYTOLOGY; GEL ELECTROPHORESIS; INFLUENZA; ISOELECTRIC POINT; METHYLATION; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROCESS MONITORING; PROTEIN ANALYSIS; PROTEIN FUNCTION; PROTEIN GLYCOSYLATION; PROTEIN MODIFICATION; PROTEIN PHOSPHORYLATION; QUALITATIVE ANALYSIS; QUANTITATIVE ASSAY; VALIDATION PROCESS;

ALGORITHMS; HEAT-SHOCK PROTEINS; HSP70 HEAT-SHOCK PROTEINS; ISOELECTRIC POINT; MOLECULAR WEIGHT; PHOSPHORYLATION; PROTEIN PROCESSING, POST-TRANSLATIONAL; PROTEINS; REPRODUCIBILITY OF RESULTS;

EID: 2942538330     PISSN: 16159853     EISSN: None     Source Type: Journal    
DOI: 10.1002/pmic.200300778     Document Type: Article

References (31)

1. Blom, N., Gammeltoft, S., Brunak, S., J. Mol. Biol. 1999, 294, 1351-1362.
2. Eisenhaber, B., Bork, P., Eisenhaber, F., J. Mol. Biol. 1999, 292, 741-758.
3. Monigatti, F., Gasteiger, E., Bairoch, A., Jung, E., Bioinformatics 2002, 18, 769-770.
4. Nielsen, H., Engelbrecht, J., Brunak, S., von Heijne, G., Protein Eng. 1997, 10, 1-6.
5. Hansen, J. E., Lund, O., Engelbrecht, J., Bohr, H. et al., Biochem. J. 1995, 308, 801-813.
6. Gianazza, E., J. Chromatogr. A 1995, 705, 67-87.
7. Kaufmann, H., Bailey, J. E., Fussenegger, M., Proteomics 2001, 1, 194-199.
8. van der Geer, P., Hunter, T., Electrophoresis 1994, 15, 544-554.
9. Yan, J. X., Packer, N. H., Gooley, A. A., Williams, K. L., J. Chromatogr. A 1998, 808, 23-41.
10. Mann, M., Jensen, O. N., Nat. Biotechnol. 2003, 21, 255-261.
11. O'Farrell, P. H., J. Biol Chem. 1975, 250, 4007-4021.
12. Tatu, U., Helenius, A., J. Cell Biol. 1997, 136, 555-565.
13. Bjellqvist, B., Hughes, G. J., Pasquali, C., Paquet, N. et al., Electrophoresis 1993, 14, 1023-1031.
14. Knowlton, A. A., Grenier, M., Kirchhoff, S. R., Salfity, M., Am. J. Physiol. Heart Circ. Physiol. 2000, 278, H2143-2149.
15. Landry, J., Lambert, H., Zhou, M., Lavoie, J. N. et al., J. Biol. Chem. 1992, 267, 794-803.
16. Holmberg, C. I., Tran, S. E., Eriksson, J. E., Sistonen, L., Trends Biochem. Sci. 2002, 27, 619-627.
17. Appella, E., Anderson, C. W., Eur. J. Biochem. 2001, 268, 2764-2772.
18. Sarto, C., Marocchi, A., Sanchez, J.-C., Giannone, D. et al., Electrophoresis, 1997, 18, 599-604.
19. Nakai, A., Kawatani, T., Ohi, S., Kawasaki, H. et al., Cell. Struct. Funct. 1995, 20, 33-39.
20. Gupta, S., Seth, A., Davis, R. J., Proc. Natl. Acad. Sci. USA 1993, 90, 3216-3220.
21. Chang, T. S., Jeong, W., Choi, S. Y., Yu, S. et al., J. Biol. Chem. 2002, 277, 25370-25376.
22. Chu, A., Matusiewicz, N., Stochaj, U., FASEB J. 2001, 15, 1478-1480.
23. Beg, Z. H., Stonik, J. A., Hoeg, J. M., Demosky, S. J. Jr. et al., J. Biol. Chem. 1989, 264, 6913-6921.
24. Tanaka, Y., Tanaka, R., Kawabata, T., Noguchi, Y., Himeno, M., J. Biochem. (Tokyo) 2000, 128, 39-48.
25. Copeland, C. S., Zimmer, K. P., Wagner, K. R., Healey, G. A. et al., Cell 1988, 53, 197-209.
26. Richards, E. J., Elgin, S. C., Cell 2002, 108, 489-500.
27. Berger, S. L., Curr. Opin. Genet. Dev. 2002, 12, 142-148.
28. McLachlin, D. T., Chait, B. T., Curr. Opin. Chem. Biol. 2001, 5, 591-602.
29. Martin, K., Steinberg, T. H., Cooley, L. A., Gee, K. R. et al., Proteomics 2003, 3, 1244-1255.
30. Bonenfant, D., Schmelzle, T., Jacinto, E., Crespo, J. L. et al., Proc. Natl. Acad. Sci. USA 2003, 100, 880-885.
31. Steinberg, T. H., Agnew, B. J., Gee, K. R., Leung, W. Y. et al., Proteomics 2003, 3, 1128-1144.