Major genomic mitochondrial lineages delineate early human expansions

BMC Genetics

Volumn 2, Issue , 2001, Pages

  Maca Meyer, Nicole ^a   González, Ana M ^a   Larruga, José M ^a   Flores, Carlos ^a   Cabrera, Vicente M ^a  

^a UNIVERSIDAD DE LA LAGUNA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

MITOCHONDRIAL DNA;

AFRICA; ARTICLE; ASIA; CALIBRATION; CAUCASIAN; CLADISTICS; CONTROLLED STUDY; DNA SEQUENCE; EUROPE; GENOMICS; HUMAN; INDIA; NORTH AFRICA; NUCLEOTIDE SEQUENCE; PHYLOGENY;

HOMO; HOMO SAPIENS;

EID: 2942524128     PISSN: 14712156     EISSN: None     Source Type: Journal    
DOI: 10.1186/1471-2156-2-13     Document Type: Article

References (37)

1. Bandelt H-J, Forster P, Sykes BC, Richards MB: Mitochondrial portraits of human populations using median networks. Genetics 1995, 141:743-753
2. Richards M, Macaulay V, Hickey E, Vega E, Sykes B, Guida V, Rengo Ch, Sellito D, Cruciani F, Kivisild T, et al: Tracing European founder lineages in the Near Eastern mtDNA pool. Am. J. Hum. Genet. 2000, 67:1251-1276
3. Torroni A, Neel JV, Barrantes R, Schurr TG, Wallace DC: Mitochondrial DNA "clock" for the Amerinds and its implications for timing their entry into North America. Proc Natl Acad Sci U.S.A. 1994, 91:1158-1162
4. Sykes B, Leiboff A, Low-Beer J, Tetzner S, Richards M: The origins of the Polynesians: An interpretation from mitochondrial lineage analysis. Am. J. Hum. Genet. 1995, 57:1463-1475
5. Lum JK, Cann RL, Martinson JJ, Jorde LB: Mitochondrial and nuclear genetic relationships among Pacific Island and Asian populations Am. J. Hum. Genet. 1998, 63:613-624
6. Cann RL, Stoneking M, Wilson AC: Mitochondrial DNA and human evolution. Nature 1987, 325:31-36
7. Ingman M, Kaessmann H, Pääbo S, Gyllensten U: Mitochondrial genome variation and the origin of modern humans Nature 2000, 408:708-713
8. Anderson S, Bankier AT, Barrell BG, de Bruijn MHL, Coulson AR, Drouin J, Eperon IC, Nierlich DP, Roe BA, Sanger F, et al: Sequence and organization of the human mitochondrial genome Nature 1981, 290:457-465
9. Kivisild T, Bamshad MJ, Kaldma K, Metspalu M, Metspalu E, Reidla M, Laos S, Parik J, Watkins WS, Dixon ME, et al: Deep common ancestry of Indian and western-Eurasian mitochondrial DNA lineages. Curr. Biol. 1999, 9:1331-1334
10. Macaulay V, Richards M, Hickey E, Vega E, Cruciani F, Guida V, Scozzari R, Bonné-Tamir B, Sykes B, Torroni A: The emerging tree of West Eurasian mtDNAs: A synthesis of control-region sequences and RFLPs Am. J. Hum. Genet. 1999, 64:232-249
11. Watson E, Forster P, Richards M, Bandelt H-J: Mitochondrial footprints of human expansions in Africa. Am. J. Hum. Genet. 1997, 61:691-704
12. Labuda D, Zietkiewicz E, Yotova V: Archaic lineages in the history of modern humans. Genetics 2000, 156:799-808
13. Cavalli-Sforza LL, Menozzi P, Piazza A: The History and Geography of Human Genes. Princeton University Press, New Jersey 1996
14. Ballinger SW, Schurr TG, Torroni A, Gan YY, Hodge JA, Hassan K, Chen K-H, Wallace DC: Southeast Asian mitochondrial DNA analysis reveals genetic continuity of ancient Mongoloid migrations Genetics 1992, 130:139-152
15. Quintana-Murci L, Semino O, Bandelt H-J, Passarino G, McElreavey K, Santachiara-Benerecetti AS: Genetic evidence of an early exit of Homo sapiens sapiens from Africa through Eastern Africa. Nature Genetics 1999, 23:437-441
16. Kivisild T, Kaldma K, Metspalu M, Parik J, Papiha S, Villems R: The place of the Indian mitochondrial DNA variants in the global network of the maternal lineages and the peopling of the old world. In: Genomic Diversity: Applications in Human Population Genetics (Edited by Papiha S, Deka R, Chakraborty R) New York, Kluwer Academic Plenum Publishers 1999 135-152
17. Comas D, Calafell F, Mateu E, Pérez-Lezaun A, Bosch E, Martínez-Arias R, Clarimon J, Facchini F, Fiori G, Luiselli D, et al: Trading genes along the silk road: mtDNA sequences and the origin of Central Asian populations Am. J. Hum. Genet. 1998, 63:1824-1838
18. Brown MD, Hosseini SH, Torroni A, Bandelt H-J, Allen JC, Schurr TG, Scozzari R, Cruciani F, Wallace DC: mtDNA haplogroup X: An ancient link between Europe/Western Asia and North America? Am. J. Hum. Genet. 1998, 63:1852-1861
19. Derenko MV, Grzybowski T, Malyarchuk BA, Czarny J, Miscicka-Sliwka D, Zakharov IA: The presence of mitochondrial haplogroup X in Altaians from South Siberia. Am. J. Hum. Genet. 2001, 69:237-241
20. Horai S, Hayasaka K: Intraspecific nucleotide sequence differences in the major noncoding region of human mitochondrial DNA. Am. J. Hum. Genet. 1990, 46:828-842
21. Melton T, Peterson R, Redd A, Saha N, Sofro ASM, Martison J, Stoneking M: Polynesian genetic affinities with Southeast Asian populations as identified by mtDNA analysis. Am. J. Hum. Genet. 1995, 57:403-414
22. Soodyall H, Vigilant L, Hill AV, Stoneking M, Jenkins T: MtDNA control-region sequence variation suggests multiple independent origins of an "Asian-specific" 9-bp deletion in Sub-Saharan Africans Am. J. Hum. Genet. 1996, 58:595-608
23. Watkins WS, Bamshad M, Dixon ME, Bhaskara Rao B, Naidu JM, Reddy PG, Prasad BVR, Das PK, Reddy PC, Gai PB, et al: Multiple origins of the mtDNA 9-bp deletion in populations of South India. Am. J. Phys. Anthropol. 1999, 109:147-158
24. Yao Y-G, Watkins WS, Zhang Y-P: Evolutionary history of the mtDNA 9-bp deletion in Chinese populations and its relevance to the peopling of East and Southeast Asia. Hum. Genet. 2000, 107:504-512
25. Torroni A, Petrozzi M, Santolamazza P, Stellitto D, Cruciani F, Scozzari R: About the "Asian"-specific 9-bp deletion of mtDNA... Am. J. Hum. Genet. 1995, 57:507-508
26. Kolman CJ, Sambuughin N, Bermingham E: Mitochondrial DNA analysis of Mongolian populations and implications for the origin of New World founders Genetics 1996, 142:1321-1334
27. Metspalu E, Kivisild T, Kaldma K, Parik J, Reidla M, Tambets K, Villems R: The trans-Caucasus and the expansion of the Caucasoid-specific human mitochondrial DNA. In: Genomic Diversity: Applications in Human Population Genetics (Edited by Papiha S, Deka R, Chakraborty R) New York, Kluwer Academic / Plenum Publishers 1999121-133
28. Rando JC, Pinto F, González AM, Hernández M, Larruga JM, Cabrera VM, Bandelt H-J: Mitochondrial DNA analysis of Northwest African populations reveals genetic exchanges with European, Near-Eastern, and sub-Saharan populations Ann. Hum. Genet. 1998, 62:531-550
29. Flores C, Hernández M, González AM, Cabrera VM: Genetic affinities among human populations inhabiting the Subsaharan area, Northwest Africa, and the Iberian Peninsula. In Prehistoric Iberia: Genetics, Anthropology, and Linguistics (Edited by Arnaiz-Villena A) New York, Kluwer Academic/Plenum Publishers 200033-50
30. Krings M, Salem AH, Bauer K, Geisert H, Malek A, Chaix L, Simon C, Welsby D, Di Rienzo A, Utermann G, et al: mtDNA analysis of Nile River valley populations: A genetic corridor or a barrier to migration? Am. J. Hum. Genet. 1999, 64:1166-1176
31. Hammer MF, Karafet T, Rasanayagam A, Wood ET, Altheide TK, Jenkins T, Griffiths RC, Templeton AR, Zegura SL: Out of Africa and back again: Nested cladistic analysis of human Y chromosome variation. Mol. Biol. Evol. 1998, 15:427-441
32. Bandelt H-J, Forster P, Röhl A: Median-joining networks for inferring intraspecific phylogenies. Mol. Biol. Evol. 1999, 16:37-48
33. Saitou N, Nei M: The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4:406-425
34. Finnilä S, Hassinen IE, Ala-Kokko L, Majamaa K: Phylogenetic network of the mtDNA haplogroup U in Northern Finland based on sequence analysis of the complete coding region by conformation-sensitive gel electrophoresis. Am. J. Hum. Genet. 2000, 66:1017-1026
35. Ozawa T, Katsumata K, Hayakawa M, Tanaka M, Sugiyama S, Tanaka T, Itoyama S, Nunoda S, Sekiguchi M: Genotype and phenotype of severe mitochondrial cardiomyopathy: A recipient of heart transplantation and the genetic control. Biochem. Biophys. Res. Commun. 1995, 207:613-620
36. Ozawa T, Tanaka M, Sugiyama S, Hidekazu I, Ohno K, Hattori K, Ohbayashi T, Ito T, Deguchi H, Kawamura K, et al: Patients with idiopathic cardiomyopathy belong to the same mitochondrial DNA genes family of Parkinson's disease and mitochondrial encephalomyopathy. Biochem. Biophys. Res. Commun. 1991, 177:518-525
37. Nishino I, Seki A, Maegaki Y, Takeshita K, Horai S, Nonaka I, Goto Y: A novel mutation in the mitochondrial tRNAThr gene associated with a mitochondrial encephalomyopathy. Biochem. Biophys. Res. Commun. 1996, 225:180-185