Genomic organization and expression analysis of the murine Fam3c gene

Gene

Volumn 335, Issue 1-2, 2004, Pages 159-168

  Pilipenko, Valentina V ^a   Reece, Alisa ^a   Choo, Daniel I ^a,b   Greinwald Jr , John H ^a,b  

^a CINCINNATI CHILDREN'S HOSPITAL MEDICAL CENTER   (United States)

^b UNIVERSITY OF CINCINNATI COLLEGE OF MEDICINE   (United States)

Author keywords

5 bromo 4 chloro 3 indolyl phosphate; A; aa; amino acid(s); anterior; anterior semicircular canal; Asc; base pair(s); BCIP; bp; Br; Brain; C; cDNA; cochlea; Development; DNA complementary to RNA; In situ hybridization; Inner ear; Polyadenylation; Semicircular canals

Indexed keywords

ANIMAL CELL; ANIMAL TISSUE; ARTICLE; CELL DIFFERENTIATION; CELL PROLIFERATION; CONTROLLED STUDY; DOWNSTREAM PROCESSING; EMBRYO DEVELOPMENT; FAM3C GENE; GENE; GENE EXPRESSION; GENE IDENTIFICATION; GENE STRUCTURE; GENE TARGETING; GENETIC TRANSCRIPTION; GENOMICS; IN SITU HYBRIDIZATION; INNER EAR; MOUSE; NEUROEPITHELIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; ORTHOLOGY; PRIORITY JOURNAL; PROMOTER REGION;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; BINDING SITES; BLOTTING, NORTHERN; CONSERVED SEQUENCE; CYTOKINES; DNA, COMPLEMENTARY; EAR, INNER; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENES; HUMANS; IN SITU HYBRIDIZATION; MICE; MOLECULAR SEQUENCE DATA; NEOPLASM PROTEINS; PROTEINS; REGULATORY SEQUENCES, NUCLEIC ACID; RNA, MESSENGER; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; SEQUENCE HOMOLOGY, NUCLEIC ACID; TIME FACTORS;

MURINAE;

EID: 2942513139     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2004.03.026     Document Type: Article

References (30)

1. Choo D., Sanne J.L., Wu D.K. The differential sensitivities of inner ear structures to retinoic acid during development. Dev. Biol. 204:1998;136-150
2. Endo T. O-mannosyl glycans in mammals. Biochim. Biophys. Acta. 1473:1999;237-246
3. Greinwald J.H., Wayne S., Chen A.H., Scott D.A., Zbar R.I.S., Kraft M.L., Prasad S., Ramesh A., et al. Localization of a novel gene for nonsyndromic hearing loss (DFNB17) to chromosome region 7q31. Am. J. Med. Genet. 78:1998;107-113
4. Guo Y., Pilipenko V., Lim L.H.Y., Wayne S., Dou H., Srisailapathy C.R.S., Ramesh A., Giersch A., et al. Redefining the DFNB17 interval in consanguineous indian families. Assoc. Res. Otolaryngol. Abstr. 2003;7
5. Hadrys T., Braun T., Rinkwitz-Brandt S., Arnold H.H., Bober E. Nkx5-1 controls semicircular canal formation in the mouse inner ear. Development. 125:1998;33-39
6. Jaegle M., Ghazvini M., Mandemakers W., Piirsoo M., Driegen S., Levavasseur F., Raghoenath S., Grosveld F., et al. The POU proteins Brn-2 and Oct-6 share important functions in Schwann cell development. Genes Dev. 17:2003;1380-1391
7. Jegga A.G., Sherwood S.P., Carman J.W., Pinski A.T., Phillips J.L., Pestian J.P., Aronow B.J. Detection and visualization of compositionally similar cis-regulatory element clusters in orthologous and coordinately controlled genes. Genome Res. 12:2002;1408-1417
8. Jones S.A., Rose-John S. The role of soluble receptors in cytokine biology: the agonistic properties of the sIL-6R/IL-6 complex. Biochim. Biophys. Acta. 1592:2002;251-263
9. Kyte J., Doolittle R.F. A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 157:1982;105-132
10. Martin P., Swanson G.J. Descriptive and experimental analysis of the epithelial remodellings that control semicircular canal formation in the developing mouse inner ear. Dev. Biol. 159:1993;549-558
11. Mattick J.S. Challenging the dogma: the hidden layer of non-protein-coding RNAs in complex organisms. BioEssays. 25:2003;930-939
12. McGuffin L.J., Bryson K., Jones D.T. The PSIPRED protein structure prediction server. Bioinformatics. 16:2000;404-405
13. Morsli H., Choo D., Ryan A., Johnson R., Wu D.K. Development of the mouse inner ear and origin of its sensory organs. J. Neurosci. 18:1998;3327-3335
14. Murphy P., Kolsto A. Expression of the bZIP transcription factor TCF11 and its potential dimerization partners during development. Mech. Dev. 97:2000;141-148
15. Nance W.E. The genetics of deafness. Ment. Retard. Dev. Disabil. Res. Rev. 9:2003;109-119
16. Nielsen H., Engelbrecht J., Brunak S., von Heijne G. Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Eng. 10:1997;1-6
17. Parks G.D., Lamb R.A. Role of NH2-terminal positively charged residues in establishing membrane protein topology. J. Biol. Chem. 268:1993;19101-19109
18. Ponnio T., Burton Q., Pereira F.A., Wu D.K., Conneely O.M. The nuclear receptor Nor-1 is essential for proliferation of the semicircular canals of the mouse inner ear. Mol. Cell. Biol. 22:2002;935-945
19. Quandt K., Frech K., Karas H., Wingender E., Werner T. MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data. Nucleic Acids Res. 23:1995;4878-4884
20. Reymond A., Friedli M., Henrichsen C.N., Chapot F., Deutsch S., Ucla C., Rossier C., Lyle R., et al. From PREDs and Open Reading Frames to cDNA Isolation: Revisiting the Human Chromosome 21 Transcription Map. Genomics. 78:2001;46-54
21. Rinkwitz-Brandt S., Arnold H.H., Bober E. Regionalized expression of Nkx5-1, Nkx5-2, Pax2 and sek genes during mouse inner ear development. Hear. Res. 99:1996;129-138
22. Robertson N.G., Khetarpal U., Gutierrez-Espeleta G.A., Bieber F.R., Morton C.C. Isolation of novel and known genes from a human fetal cochlear cDNA library using subtractive hybridization and differential screening. Genomics. 23:1994;42-50
23. Rost B., Fariselli P., Casadio R. Topology prediction for helical transmembrane proteins at 86% accuracy. Protein Sci. 5:1996;1704-1718
24. Schwartz S., Zhang Z., Frazer K.A., Smit A., Riemer C., Bouck J., Gibbs R., Hardison R., et al. PipMaker-a web server for aligning two genomic DNA sequences. Genome Res. 10:2000;577-586
25. Scott D.A., Drury S., Sundstrom R.A., Bishop J., Swiderski R.E., Carmi R., Ramesh A., Elbedour K., et al. Refining the DFNB7-DFNB11 deafness locus using intragenic polymorphisms in a novel gene, TMEM2. Gene. 246:2000;265-274
26. Sehgal A., Patil N., Chao M. A constitutive promoter directs expression of the nerve growth factor receptor gene. Mol. Cell. Biol. 8:1988;3160-3167
27. Servant F., Bru C., Carrère S., Courcelle E., Gouzy J., Peyruc D., Kahn D. ProDom: automated clustering of homologous domains. Brief. Bioinform. 3:2002;246-251
28. Wines M.E., Lee L., Katari M.S., Zhang L., DeRossi C., Shi Y., Perkins S., Feldman M., et al. Identification of mesoderm development (mesd) candidate genes by comparative mapping and genome sequence analysis. Genomics. 72:2001;88-98
29. Wurst W., Auerbach A.B., Joyner A.L. Multiple developmental defects in Engrailed-1 mutant mice: an early mid-hindbrain deletion and patterning defects in forelimbs and sternum. Development. 120:1994;2065-2075
30. Zhu Y., Xu G., Patel A., McLaughlin M.M., Silverman C., Knecht K., Sweitzer S., Li X., et al. Cloning, expression, and initial characterization of a novel cytokine-like gene family. Genomics. 80:2002;144-150