Mapping coastal optical and biogeochemical variability using an autonomous underwater vehicle and a new bio-optical inversion algorithm

Limnology and Oceanography: Methods

Volumn 2, Issue 8, 2004, Pages 262-281

  Brown, Catherine A ^a   Huot, Yannick ^a   Purcell, Michael J ^b   Cullen, John J ^a   Lewis, Marlon R ^a  

^a DALHOUSIE UNIVERSITY   (Canada)

^b WOODS HOLE OCEANOGRAPHIC INSTITUTION   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGAE; HYDROIDA;

EID: 29244452509     PISSN: None     EISSN: 15415856     Source Type: Journal    
DOI: 10.4319/lom.2004.2.262     Document Type: Article

References (41)

1. Abbott, M. R., J. G. Richman, R. M. Letelier, and J. S. Bartlett. 2000. The spring bloom in the Antarctic Polar Frontal Zone as observed from a mesoscale array of bio-optical sensors. Deep-Sea Res. II 47:3285-3314.
2. Albert, A., and C. D. Mobley. 2003. An analytical model for subsurface irradiance and remote sensing reflectance in deep and shallow case-2 waters. Opt. Express 11:2873-2890.
3. Baker, K. S., and R. C. Smith. 1979. Quasi-inherent characteristics of the diffuse attenuation coefficient for irradiance, p. 60-63, SPIE: Ocean Optics VI.
4. Bartlett, J. S., A. M. Ciotti, R. F. Davis, and J. J. Cullen. 1998. The spectral effects of clouds on solar irradiance. J. Geophys. Res. 103:31017-31031.
5. Berwald, J., D. Stramski, C. D. Mobley, and D. A. Kiefer. 1998. Effect of Raman scattering on the average cosine and diffuse attenuation coefficient of irradiance in the ocean. Limnol. Oceanogr. 43:564-576.
6. Boss, E., W. S. Pegau, M. Lee, M. Twardowski, E. Shybanov, G. Korotaev, and F. Baratange. 2004. Particulate backscattering ratio at LEO 15 and its use to study particle composition and distribution. J. Geophys. Res. 109(C1): C01014 [doi:10.1029/2002JC001514].
7. Bricaud, A., A. Morel, M. Babin, K. Allali, and H. Claustre. 1998. Variations of light absorption by suspended particles with the chlorophyll a concentration in oceanic (Case 1) waters: Analysis and implications for bio-optical models. J. Geophys. Res. 103:31033-31044.
8. Carder, K. L., F. R. Chen, Z. P. Lee, S. K. Hawes, and D. Kamykowski. 1999. Semianalytic moderate-resolution imaging spectrometer algorithms for chlorophyll a and absorption with biooptical domains based on nitrate-depletion temperatures. J. Geophys. Res. 104:5403-5421.
9. Chang, G. C., and others. 2002. Nearshore physical processes and bio-optical properties in the New York Bight. J. Geophys. Res. 107(C9): 3133 [doi: 10.1029/2001JC001018].
10. Ciotti, A. M., M. R. Lewis, and J. J. Cullen. 2002. Assessment of the relationships between dominant cell size in natural phytoplankton communities and the spectral shape of the absorption coefficient. Limnol. Oceanogr. 47:404-417.
11. Coleman, T. F., and Y. Li. 1994. On the convergence of interior-reflective Newton methods for nonlinear minimization subject to bounds. Math. Program. 67:189-224.
12. Coleman, T. F., and Y. Li. 1996. An interior trust region approach for nonlinear minimization subject to bounds. SIAM J. Optimiz. 6:418-445.
13. Cullen, J. J., A. M. Ciotti, R. F. Davis, and M. R. Lewis. 1997. Optical detection and assessment of algal blooms. Limnol. Oceanogr. 42:1223-1239.
14. Dickey, T. D. 1991. The emergence of concurrent high-resolution physical and bio-optical measurements in the upper ocean and their applications. Rev. Geophys. 29:383-413.
15. Dickey, T. D. and G. C. Chang. 2001. Recent advances and future visions: temporal variability of optical and bio-optical properties of the ocean. Oceanography 14:15-29.
16. Glenn, S. M., T. D. Dickey, B. Parker, and W. Boicourt. 2000. Long-term real-time coastal ocean observation networks. Oceanography 13:24-34.
17. Gordon, H. R. 1989. Can the Lambert-Beer law be applied to the diffuse attenuation coefficient of ocean water? Limnol. Oceanogr. 34:1389-1409.
18. Gregg, W. W., and K. L. Carder. 1990. A simple spectral solar irradiance model for cloudless maritime atmospheres. Limnol. Oceanogr. 35:1657-1675.
19. Griffiths, G. 2002. Technology and applications of autonomous underwater vehicles. Taylor and Francis.
20. Griffiths, G., R. Davis, C. Eriksen, D. Frye, P. Marchand, and T. Dickey. 2001. Towards new platform technology for sustained observations, p. 324-338. In C. J. Koblinsky and N. R. Smith [eds.], Observing the ocean for climate in the 21st century. GODAE, Bureau of Meteorology.
21. Kiefer, D. A., and R. A. Reynolds. 1992. Advances in understanding phytoplankton fluorescence and photosynthesis, p. 155-174. In P. G. Falkowski [ed.], Primary productivity and biogeochemical cycles in the sea. Plenum Press.
22. Kirk, J. T. O. 1994. Light and photosynthesis in aquatic ecosystems, 2nd ed. Cambridge Univ. Press.
23. Maritorena, S., A. Morel, and B. Gentili. 2000. Determination of the fluorescence quantum yield by oceanic phytoplankton in their natural habitat. Appl. Optics 39:6725-6737.
24. Maritorena, S., A. Morel, D. A. Siegel, and A. Peterson. 2002. Optimization of a semi-analytical ocean color model for global scale applications. Appl. Optics 41:2705-2714.
25. Marshall, B. R., and R. C. Smith. 1990. Raman scattering and in-water ocean optical properties. Appl. Optics 29:71-84.
26. Mitchell, B. G., M. Kahru, and J. Sherman. 2000. Autonomous temperature-irradiance profiler resolves the spring bloom in the Sea of Japan. Proc. Ocean Optics XV, Monaco.
27. Morel, A. 1988. Optical modeling of the upper ocean in relation to its biogenous matter content (Case I waters). J. Geophys. Res. 93:10749-10768.
28. Morel, A. and S. Maritorena. 2001. Bio-optical properties of oceanic waters: A reappraisal. J. Geophys. Res.-Oceans 106:7163-7180.
29. Mueller, J. L., and G. S. Fargion. 2002. Ocean optics protocols for satellite ocean color sensor validation. Revision 3. Part 1., p. 137. NASA/TM-2002-21004/Rev3-Vol1. NASA Goddard Space Flight Center.
30. Nahorniak, J. S., M. R. Abbott, R. M. Letelier, and W. S. C. Pegau. 2001. Analysis of a method to estimate chlorophyll-a concentration from irradiance measurements at varying depths. J. Atmos. Ocean. Tech. 18:2063-2073.
31. Pope, R. M., and E. S. Fry. 1997. Absorption spectrum (380-700 nm) of pure water. II. Integrating cavity measurements. Appl. Optics 36:8710-8723.
32. Preisendorfer, R. W. 1976. Hydrologic optics. Vol. I. Introduction. U.S. Department of Commerce, National Oceanic and Atmospheric Administration, Environment Research Laboratory.
33. Purcell, M., C. von Alt, B. Allen, T. Austin, N. Forrester, R. Goldsborough, and R. Stokey. 2000. New capabilities of the REMUS autonomous underwater vehicle. OCEANS 2000 MTS/IEEE Conference and Exhibition.
34. Roesler, C., and E. Boss. 2003. Spectral beam attenuation coefficient retrieved from ocean color inversion. Geophys. Res. Lett. 30(9): 1468 [doi: 10.1029/2002GL016185].
35. Roesler, C., and M. J. Perry. 1995. In situ phytoplankton absorption, fluorescence emission, and particulate backscattering spectra determined from reflectance. J. Geophys. Res. 100:13279-13294.
36. Rudnick, D. L., and M. J. Perry. 2003. ALPS: Autonomous and Lagrangian Platforms and Sensors, Workshop Report, p. 64.
37. Siegel, D. A., T. K. Westberry, and J. C. Ohlmann. 1999. Cloud color and ocean radiant heating. J. Climate 12:1101-1116.
38. Sosik, H. M., R. E. Green, W. S. Pegau, and C. S. Roesler. 2001. Temporal and vertical variability in optical properties of New England shelf waters during late summer and spring. J. Geophys. Res. 106:9455-9472.
39. Yu, X., T. Dickey, J. Bellingham, D. Manov, and K. Streilein. 2002. The application of autonomous underwater vehicles for interdisciplinary measurements in Massachusetts and Cape Cod Bays. Cont. Shelf Res. 22:2225-2245.
40. Zhang, X., M. R. Lewis, M. Li, B. Johnson, and G. Korotaev. 2002. The volume scattering function of natural bubble populations. Limnol. Oceanogr. 47:1273-1282.
41. Zheng, X., T. Dickey, and G. C. Chang. 2002. Variability of the downwelling diffuse attenuation coefficient with consideration of inelastic scattering. Appl. Optics 41:6477-6488.