Large-scale μLC-MS/MS for silver- and Coomassie blue-stained polyacrylamide gels

Electrophoresis

Volumn 26, Issue 23, 2005, Pages 4495-4507

  Zhu, Wenhong ^a   Venable, John ^a   Giometti, Carol S ^b   Khare, Tripti ^b   Tollaksen, Sandra ^b   Ahrendt, Angela J ^b   Yates III, John R ^a  

^a SCRIPPS RESEARCH INSTITUTE   (United States)

^b ARGONNE NATIONAL LABORATORY   (United States)

Author keywords

Automation; Coomassie Blue staining; Mass spectrometry; Protein identification; SEQUEST; Silver staining; Two dimensional gel electrophoresis; LC MS MS

Indexed keywords

AUTOMATION; BACTERIA; ELECTROPHORESIS; GELS; PEPTIDES; SILVER;

BLUE STAINING; COOMASSIE BLUE STAINING; LARGE-SCALES; LC-MS-MS; PROTEIN IDENTIFICATION; SEQUEST; SILVER STAINING; SIMPLE++; TWO-DIMENSIONAL GEL ELECTROPHORESIS; ΜLC-MS/MS;

MASS SPECTROMETRY;

ANAZOLENE SODIUM; FORMALDEHYDE; POLYACRYLAMIDE GEL; PROTEOME; SILVER; ACRYLIC ACID RESIN; BACTERIAL PROTEIN; FUCHSINE; PEPTIDE; POLYACRYLAMIDE GELS;

ARTICLE; CONTROLLED STUDY; EXTRACTION; GEOBACTER; HIGH THROUGHPUT SCREENING; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; PROTEIN ANALYSIS; RELIABILITY; SENSITIVITY AND SPECIFICITY; SHEWANELLA ONEIDENSIS; SILVER STAINING; TWO DIMENSIONAL GEL ELECTROPHORESIS; AMINO ACID SEQUENCE; CHEMISTRY; METABOLISM; MOLECULAR GENETICS; SHEWANELLA;

ACRYLIC RESINS; AMINO ACID SEQUENCE; BACTERIAL PROTEINS; CHROMATOGRAPHY, LIQUID; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; GEOBACTER; MASS SPECTROMETRY; MOLECULAR SEQUENCE DATA; PEPTIDES; ROSANILINE DYES; SHEWANELLA; SILVER STAINING;

EID: 29244442571     PISSN: 01730835     EISSN: None     Source Type: Journal    
DOI: 10.1002/elps.200500093     Document Type: Article

References (36)

1. Steel, L. F., Haab, B. B., Hanash, S. M., J. Chromatogr. B 2005, 815, 275-284.
2. Yu, L. R., Zeng, R., Shao, X. X., Wang, N., Xu, Y. H., Xia, Q. C., Electrophoresis 2000, 21, 3058-3068.
3. Lilley, K. S., Razzaq, A., Dupree, P., Curr. Opin. Chem. Biol. 2002, 6, 46-50.
4. Gygi, S. P., Corthals, G. L., Zhang, Y., Rochon, Y., Aebersold, R., Proc. Natl. Acad. Sci. USA 2000, 97, 9390-9395.
5. Shaw, M. M., Riederer, B. M., Proteomics 2003, 3, 1408-1417.
6. Giometti, C. S., Khare, T., Tollaksen, S. L., Tsapin, A., Zhu, W., Yates III, J. R., Nealson, K. H., Proteomics 2003, 3, 777-785.
7. Giometti, C. S., Reich, C., Tollaksen, S., Babnigg, G., Lim, H., Zhu, W., Yates, J., 3rd, Olsen, G., J. Chromatogr. B 2002, 782, 227-243.
8. Yates III, J. R., Annu. Rev. Biophys. Biomol. Struct. 2004, 33, 297-316.
9. Yates III, J. R., Carmack, E., Hays, L., Link, A. J., Eng, J. K., Methods Mol. Biol. 1999, 112, 553-569.
10. Lin, D., Tabb, D. L., Yates III, J. R., Biochim. Biophys. Acta 2003, 1646, 1-10.
11. Gatlin, C. L., Kleemann, G. R., Hays, L. G., Link, A. J., Yates III, J. R., Anal. Biochem. 1998, 263, 93-101.
12. Eng, J. K., MaCormack, A. L., Yates III, J. R., J. Am. Soc. Mass Spectrom. 1994, 5, 976-989.
13. van der Heeft, E., ten Hove, G. J., Herberts, C. A., Meiring, H. D., van Els, C. A., de Jong, A. P., Anal. Chem. 1998, 70, 3742-3751.
14. Devreese, B., Vanrobaeys, F., Van Beeumen, J., Rapid Commun. Mass Spectrom. 2001, 15, 50-56.
15. Lin, Z., Crockett, D. K., Lim, M. S., Elenitoba-Johnson, K. S. J., J. Biomol. Technol. 2003, 14, 149-155.
16. Licklider, L. J., Thoreen, C. C., Peng, J., Gygi, S. P., Anal. Chem. 2002, 74, 3076-3083.
17. Yi, E. C., Lee, H., Aebersold, R., Goodlett, D. R., Rapid Commun. Mass Spectrom. 2003, 17, 2093-2098.
18. Ramagli, L. S., Rodriguez, L. V., Electrophoresis 1985, 6, 559-563.
19. Anderson, N. L., Nance, S. L., Tollaksen, S. L., Giere, F. A., Anderson, N. G., Electrophoresis 1985, 6, 592-599.
20. Shevchenko, A., Wilm, M., Vorm, O., Mann, M., Anal. Chem. 1996, 68, 850-858.
21. Giometti, C. S., Gemmell, M. A., Tollaksen, S. L., Taylor, J., Electrophoresis 1991, 12, 536-543.
22. Sadygov, R. G., Eng, J., Durr, E., Saraf, A., McDonald, H., MacCoss, M. J., Yates III, J. R., J. Proteome Res. 2002, 1, 211-215.
23. MacCoss, M. J., Wu, C. C., Yates III, J. R., Anal. Chem. 2002, 74, 5593-5599.
24. Tabb, D. L., McDonald, W. H., Yates III, J. R., J. Proteome Res. 2002, 1, 21-26.
25. Kinter, M., Sherman, N. E., Protein Sequencing and Identification Using Tandem Mass Spectrometry, John Wiley & Sons, Weinheim, Germany, 2000.
26. Lim, H., Eng, J., Yates III, J. R., Tollaksen, S. L., Giometti, C. S., Holden, J. F., Adams, M. W., Reich, C. I., Olsen, G. J., Hays, L. G., J. Am. Soc. Mass Spectrom. 2003, 14, 957-970.
27. Link, A. J., Hays, L. G., Carmack, E. B., Yates III, J. R., Electrophoresis 1997, 18, 1314-1334.
28. Lauber, W. M., Carroll, J. A., Dufield, D. R., Kiesel, J. R., Radabaugh, M. R., Malone, J. P., Electrophoresis 2001, 22, 906-918.
29. Lopez, M. F., Berggren, K., Chernokalskaya, E., Lazarev, A., Robinson, M., Patton, W. F., Electrophoresis 2000, 21, 3673-3683.
30. de Moreno, M. R., Smith, J. F., Smith, R. V., J. Pharm. Sci. 1986, 75, 907-911.
31. Rabilloud, T., Electrophoresis 1990, 11, 785-794.
32. Richert, S., Luche, S., Chevallet, M., Van Dorsselaer, A., Leize-Wagner, E., Rabilloud, T., Proteomics 2004, 4, 909-916.
33. Terry, D. E., Umstot, E., Desiderio, D. M., J. Am. Soc. Mass Spectrom. 2004, 15, 784-794.
34. Liu, H., Sadygov, R. G., Yates III, J. R., Anal. Chem. 2004, 76, 4193-4201.
35. Giometti, C. S., Taylor, J., in: Dunn, M. J. (Ed.), Advances in Electrophoresis, Walter de Gruyter and Co., New York 1991, pp. 359-389.
36. Wildgruber, R., Harder, A., Obermaier, C., Bougth, G., Weiss, W., Fey, S. J., Larsen, P. M., Görg, A., Electrophoresis 2000, 21, 2610-2616.