Can one predict DNA transcription start sites by studying bubbles?

Physical Review Letters

Volumn 95, Issue 21, 2005, Pages

  Van Erp, Titus S ^a,b   Cuesta Lopez, Santiago ^b,c   Hagmann, Johannes Geert ^a,b   Peyrard, Michel ^b  

^a Centre Europeen de Calcul Atomique et Moleculaire   (France)

^b UNIVERSITÉ DE LYON   (France)

^c UNIVERSITY OF ZARAGOZA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

MOLECULAR DYNAMICS SIMULATIONS; PEYRARD-BISHOP-DAUXOIS MODEL; THERMAL FLUCTUATIONS;

BUBBLE FORMATION; BUBBLES (IN FLUIDS); COMPUTER SIMULATION; MATHEMATICAL MODELS; MOLECULAR DYNAMICS; THERMAL EFFECTS;

DNA;

DNA;

CHEMICAL MODEL; CHEMISTRY; DEPENDOPARVOVIRUS; GENETICS; PROMOTER REGION; TRANSCRIPTION INITIATION SITE;

DEPENDOVIRUS; DNA; MODELS, CHEMICAL; PROMOTER REGIONS, GENETIC; TRANSCRIPTION INITIATION SITE;

EID: 28844464259     PISSN: 00319007     EISSN: 10797114     Source Type: Journal    
DOI: 10.1103/PhysRevLett.95.218104     Document Type: Article

References (10)

1. U. Dornberger, M. Leijon, and H. Fritzsche, J. Biol. Chem. 274, 6957 (1999). JBCHA3 0021-9258 10.1074/jbc.274.11.6957
2. C.J. Benham, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 90, 2999 (1993);
3. C.J. Benham J. Mol. Biol. 255, 425 (1996). JMOBAK 0022-2836 10.1006/jmbi.1996.0035
4. C.H. Choi, Nucleic Acids Res. NARHAD 0305-1048 32, 1584 (2004); 10.1093/nar/gkh335
5. G. Kalosakas, Europhys. Lett. EULEEJ 0295-5075 68, 127 (2004). 10.1209/epl/i2004-10167-8
6. M. Peyrard and A.R. Bishop, Phys. Rev. Lett. 62, 2755 (1989). PRLTAO 0031-9007 10.1103/PhysRevLett.62.2755
7. T. Dauxois, M. Peyrard, and A.R. Bishop, Phys. Rev. E 47, 684 (1993). PLEEE8 1063-651X 10.1103/PhysRevE.47.684
8. A. Campa and A. Giansanti, Phys. Rev. E 58, 3585 (1998). PLEEE8 1063-651X 10.1103/PhysRevE.58.3585
9. K.S. Murakami, Science 296, 1285 (2002). SCIEAS 0036-8075 10.1126/science.1069595
10. S. Cuesta-Lopez (to be published).