A functional profile of gene expression in ARPE-19 cells

BMC Ophthalmology

Volumn 5, Issue , 2005, Pages

  Sharma, Rajesh K ^a   Orr, William E ^a   Schmitt, Allyson D ^a   Johnson, Dianna A ^a  

^a UNIVERSITY OF TENNESSEE HEALTH SCIENCE CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COLLAGEN; FIBRONECTIN; MATRIGEL; PLASTIC; EYE PROTEIN;

ARTICLE; DNA MICROARRAY; FUNCTIONAL GENOMICS; GENE EXPRESSION; GENE SEQUENCE; PHENOTYPE; PIGMENT EPITHELIUM; CELL LINE; GENE EXPRESSION PROFILING; GENETICS; HUMAN; METABOLISM; PHYSIOLOGY; SENSITIVITY AND SPECIFICITY;

CELL LINE; EYE PROTEINS; GENE EXPRESSION; GENE EXPRESSION PROFILING; HUMANS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PIGMENT EPITHELIUM OF EYE; SENSITIVITY AND SPECIFICITY;

EID: 28444499026     PISSN: 14712415     EISSN: 14712415     Source Type: Journal    
DOI: 10.1186/1471-2415-5-25     Document Type: Article

References (31)

1. Sharma RK, Ehinger B: Development and Structure of the Retina. In Adler's Physiology of the Eye: Clinical Application Edited by: Kaufman PL, Alm A. St. Louis: Mosby; 2003:319-347.
2. Sharma RK, Johnson DA: Molecular signals for development of neuronal circuitry in the retina. Neurochem Res 2000, 25:1257-1263.
3. Wald G: Molecular basis of visual excitation. Science 1968, 162:230-239.
4. Bok D: The retinal pigment epithelium: a versatile partner in vision. J Cell Sci Suppl 1993, 17:189-195.
5. Bok D: Retinal photoreceptor-pigment epithelium interactions. Friedenwald lecture. Invest Ophthalmol Vis Sci 1985, 26:1659-1694.
6. Dhawan J, Lichtler AC, Rowe DW, Farmer SR: Cell adhesion regulates pro-alpha 1(I) collagen mRNA stability and transcription in mouse fibroblasts. J Biol Chem 1991, 266:8470-8475.
7. Schwogler S, Odenthal M, Meyer zum Buschenfelde KH, Ramadori G: Alternative splicing products of the tenascin gene distinguish rat liver fat storing cells from arterial smooth muscle cells and skin fibroblasts. Biochem Biophys Res Commun 1992, 185:768-775.
8. Tucker RP, Hammarback JA, Jenrath DA, Mackie EJ, Xu Y: Tenascin expression in the mouse: in situ localization and induction in vitro by bFGF. J Cell Sci 1993, 104(Pt 1):69-76.
9. LaFleur DW, Fagin JA, Forrester JS, Rubin SA, Sharifi BG: Cloning and characterization of alternatively spliced isoforms of rat tenascin. Platelet-derived growth factor-BB markedly stimulates expression of spliced variants of tenascin mRNA in arterial smooth muscle cells. J Biol Chem 1994, 269:20757-20763.
10. Elner VM, Scales W, Elner SG, Danforth J, Kunkel SL, Strieter RM: Interleukin-6 (IL-6) gene expression and secretion by cytokine-stimulated human retinal pigment epithelial cells. Exp Eye Res 1992, 54:361-368.
11. Elner VM, Strieter RM, Elner SG, Baggiolini M, Lindley I, Kunkel SL: Neutrophil chemotactic factor (IL-8) gene expression by cytokine- treated retinal pigment epithelial cells. Am J Pathol 1990, 136:745-750.
12. Elner SG, Strieter RM, Elner VM, Rollins BJ, Del Monte MA, Kunkel SL: Monocyte chemotactic protein gene expression by cytokine-treated human retinal pigment epithelial cells. Lab Invest 1991, 64:819-825.
13. Jaffe GJ, Roberts WL, Wong HL, Yurochko AD, Cianciolo GJ: Monocyte-induced cytokine expression in cultured human retinal pigment epithelial cells. Exp Eye Res 1995, 60:533-543.
14. Nagineni CN, Detrick B, Hooks JJ: Synergistic effects of gamma interferon on inflammatory mediators that induce interleukin-6 gene expression and secretion by human retinal pigment epithelial cells. Clin Diagn Lab Immunol 1994, 1:569-577.
15. Bok D, Hall MO: The role of the pigment epithelium in the etiology of inherited retinal dystrophy in the rat. J Cell Biol 1971, 49:664-682.
16. Mullen RJ, La Vail MM: Inherited retinal dystrophy: primary defect in pigment epithelium determined with experimental rat chimeras. Science 1976, 192:799-801.
17. Marlhens F, Bareil C, Griffoin JM, Zrenner E, Amalric P, Eliaou C, et al.: Mutations in RPE65 cause Leber's congenital amaurosis. Nat Genet 1997, 17:139-141.
18. Gu SM, Thompson DA, Srikumari CR, Lorenz B, Finckh U, Nicoletti A, Murthy KR, Rathmann M, Kumaramanickavel G, Denton MJ, Gal A: Mutations in RPE65 cause autosomal recessive childhood-onset severe retinal dystrophy. Nat Genet 1997, 17:194-197.
19. Sarks SH: Ageing and degeneration in the macular region: a clinico-pathological study. Br J Ophthalmol 1976, 60:324-341.
20. Sharma RK, Ehinger B: Management of hereditary retinal degenerations: present status and future directions. Surv Ophthalmol 1999, 43:427-444.
21. Sharma RK, Bergström A, Ehinger B: Retinal cell transplants. Prog Retinal Eye Res 1995, 15:197-230.
22. Lander ES: Array of hope. Nat Genet 1999, 21:3-4.
23. Brown PO, Botstein D: Exploring the new world of the genome with DNA microarrays. Nat Genet 1999, 21:33-37.
24. Hacia JG: Resequencing and mutational analysis using oligonucleotide microarrays. Nat Genet 1999, 21:42-47.
25. Lipshutz RJ, Fodor SP, Gingeras TR, Lockhart DJ: High density synthetic oligonucleotide arrays. Nat Genet 1999, 21:20-24.
26. Shoemaker DD, Schadt EE, Armour CD, He YD, Garrett-Engele P, McDonagh PD, Loerch PM, Leonardson A, Lum PY, Cavet G, Wu LF, Altschuler SJ, Edwards S, King J, Tsang JS, Schimmack G, Schelter JM, Koch J, Ziman M, Marton MJ, Li B, Cundiff P, Ward T, Castle J, Krolewski M, Meyer MR, Mao M, Burchard J, Kidd MJ, Dai H, Phillips JW, Linsley PS, Stoughton R, Scherer S, Boguski MS: Experimental annotation of the human genome using microarray technology. Nature 2001, 409:922-927.
27. Chowers I, Kim Y, Farkas RH, Gunatilaka TL, Hackam AS, Campochiaro PA, Finnemann SC, Zack DJ: Changes in retinal pigment epithelial gene expression induced by rod outer segment uptake. Invest Ophthalmol Vis Sci 2004, 45:2098-2106.
28. Dunn KC, Aotaki-Keen AE, Putkey FR, Hjelmeland LM: ARPE-19, a human retinal pigment epithelial cell line with differentiated properties. Exp Eye Res 1996, 62:155-169.
29. Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, Evans CA, Holt RA, Gocayne JD, Amanatides P, Ballew RM, Huson DH, Wortman JR, Zhang Q, Kodira CD, Zheng XH, Chen L, Skupski M, Subramanian G, Thomas PD, Zhang J, Gabor Miklos GL, Nelson C, Broder S, Clark AG, Nadeau J, McKusick VA, Zinder N, Levine AJ, Roberts RJ, Simon M, Slayman C, Hunkapiller M, Bolanos R, Delcher A, Dew I, Fasulo D, Flanigan M, Florea L, Halpern A, Hannenhalli S, Kravitz S, Levy S, Mobarry C, Reinert K, Remington K, Abu-Threideh J, Beasley E, Biddick K, Bonazzi V, Brandon R, Cargill M, Chandramouliswaran I, Charlab R, Chaturvedi K, Deng Z, Di FV, Dunn P, Eilbeck K, Evangelista C, Gabrielian AE, Gan W, Ge W, Gong F, Gu Z, Guan P, Heiman TJ, Higgins ME, Ji RR, Ke Z, Ketchum KA, Lai Z, Lei Y, Li Z, Li J, Liang Y, Lin X, Lu F, Merkulov GV, Milshina N, Moore HM, Naik AK, Narayan VA, Neelam B, Nusskern D, Rusch DB, Salzberg S, Shao W, Shue B, Sun J, Wang Z, Wang A, Wang X, Wang J, Wei M, Wides R, Xiao C, Yan C, Yao A, Ye J, Zhan M, Zhang W, Zhang H, Zhao Q, Zheng L, Zhong F, Zhong , Zhu S, Zhao S, Gilbert D, Baumhueter S, Spier G, Carter C, Cravchik A, Woodage T, Ali F, An H, Awe A, Baldwin D, Baden H, Barnstead M, Barrow I, Beeson K, Busam D, Carver A, Center A, Cheng ML, Curry L, Danaher S, Davenport L, Desilets R, Dietz S, Dodson K, Doup L, Ferriera S, Garg N, Gluecksmann A, Hart B, Haynes J, Haynes C, Heiner C, Hladun S, Hostin D, Houck J, Howland T, Ibegwam C, Johnson J, Kalush F, Kline L, Koduru S, Love A, Mann F, May D, McCawley S, McIntosh T, McMullen I, Moy M, Moy L, Murphy B, Nelson K, Pfannkoch C, Pratts E, Puri V, Qureshi H, Reardon M, Rodriguez R, Rogers YH, Romblad D, Ruhfel B, Scott R, Sitter C, Smallwood M, Stewart E, Strong R, Suh E, Thomas R, Tint NN, Tse S, Vech C, Wang G, Wetter J, Williams S, Williams M, Windsor S, Winn-Deen E, Wolfe K, Zaveri J, Zaveri K, Abril JF, Guigo R, Campbell MJ, Sjolander KV, Karlak B, Kejariwal A, Mi H, Lazareva B, Hatton T, Narechania A, Diemer K, Muruganujan A, Guo N, Sato S, Bafna V, Istrail S, Lippert R, Schwartz R, Walenz B, Yooseph S, Allen D, Basu A, Baxendale J, Blick L, Caminha M, Carnes-Stine J, Caulk P, Chiang YH, Coyne M, Dahlke C, Mays A, Dombroski M, Donnelly M, Ely D, Esparham S, Fosler C, Gire H, Glanowski S, Glasser K, Glodek A, Gorokhov M, Graham K, Gropman B, Harris M, Heil J, Henderson S, Hoover J, Jennings D, Jordan C, Jordan J, Kasha J, Kagan L, Kraft C, Levitsky A, Lewis M, Liu X, Lopez J, Ma D, Majoros W, McDaniel J, Murphy S, Newman M, Nguyen T, Nguyen N, Nodell M: The sequence of the human genome. Science 2001, 291:1304-1351.
30. Fields S: The future is function. Nat Genet 1997, 15:325-327.
31. Lander ES: The new genomics: global views of biology. Science 1996, 274:536-539.