Heme axial methionine fluxion in Pseudomonas aeruginosa Asn64Gln cytochrome c551

Inorganic Chemistry

Volumn 44, Issue 23, 2005, Pages 8587-8593

  Wen, Xin ^a   Bren, Kara L ^a  

^a UNIVERSITY OF ROCHESTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; CYTOCHROME C; CYTOCHROME C(551); HEME; METHIONINE;

ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; CONFORMATION; ENZYMOLOGY; GENETICS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PSEUDOMONAS AERUGINOSA; SITE DIRECTED MUTAGENESIS; ULTRAVIOLET SPECTROPHOTOMETRY;

BACTERIAL PROTEINS; CYTOCHROME C GROUP; HEME; MAGNETIC RESONANCE SPECTROSCOPY; METHIONINE; MODELS, MOLECULAR; MOLECULAR CONFORMATION; MUTAGENESIS, SITE-DIRECTED; PSEUDOMONAS AERUGINOSA; SPECTROPHOTOMETRY, ULTRAVIOLET;

EID: 28344456638     PISSN: 00201669     EISSN: None     Source Type: Journal    
DOI: 10.1021/ic050976i     Document Type: Article

References (55)

1. Scott, R. A.; Mauk, A. G. Cytochrome c: A Multidisciplinary Approach; University Science Books: Sausalito, CA, 1996.
2. Moore, G. R.; Pettigrew, G. W. Cytochromes c: Evolutionary, Structural, and Physicochemical Aspects; Springer: Berlin, 1990.
3. La Mar, G. N.; Satterlee, J. D.; de Ropp, J. S. Nuclear magnetic resonance of hemoproteins. In The Porphyrin Handbook; Kadish, K. M., Smith, K. M., Ruilard, R., Eds.; Academic Press: New York, 2000; Vol. 5, pp 185-298.
4. Walker, F. A. Coord. Chem. Rev. 1999, 186, 471-534.
5. Shokhirev, N. V.; Walker, F. A. J. Biol. Inorg. Chem. 1998, 3, 581-594.
6. Bertini, I.; Luchinat, C.; Parigi, G.; Walker, F. A. J. Biol. Inorg. Chem. 1999, 4, 515-519.
7. Other axial Met orientations have been observed in cyts c. For example, see Costa, H. S.; Santos, H.; Turner, D. L. Eur. J. Biochem. 1994, 223, 783-789.
8. For Met, the orientation angle is determined by projecting the bisector of the Met γC-δS-εC angle onto the heme plane and taking a vector perpendicular to this projection. The orientation angle of Met is the angle between this vector and the heme x axis. For His, the orientation angle is the angle between the ligand imidazole plane and the xz plane of the molecular coordinate system.
9. Matsuura, Y.; Takano, T.; Dickerson, R. E. J. Mol. Biol. 1982, 156, 389-409.
10. Bushnell, G. W.; Louie, G. V.; Brayer, G. D. J. Mol. Biol. 1990, 214, 585-595.
11. Senn, H.; Wüthrich, K. Q. Rev. Biophys. 1985, 18, 111-134.
12. Timkovich, R.; Cai, M. L.; Zhang, B. L.; Arciero, D. M.; Hooper, A. B. Eur. J. Biochem. 1994, 226, 159-168.
13. Karan, E. F.; Russell, B. S.; Bren, K. L. J. Biol. Inorg. Chem. 2002, 7, 260-272.
14. Bren, K. L.; Kellogg, J. A.; Kaur, R.; Wen, X. Inorg. Chem. 2004, 43, 7934-7944.
15. Zhong, L.; Wen, X.; Rabinowitz, T. M.; Russell, B. S.; Karan, E. F.; Bren, K. L. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 8637-8642.
16. Low, D. W.; Gray, H. B.; Duus, J. Ø. J. Am. Chem. Soc. 1997, 119, 1-5.
17. Wen, X.; Bren, K. L. Biochemistry 2005, 44, 5225-5233.
18. Hasegawa, J.; Yoshida, T.; Yamazaki, T.; Sambongi, Y.; Yu, Y.; Igarashi, Y.; Kodama, T.; Yamazaki, K.; Kyogoku, Y.; Kobayashi, Y. Biochemistry 1998, 37, 9641-9649.
19. Travaglini-Allocatelli, C.; Gianni, S.; Dubey, V. K.; Borgia, A.; Di Matteo, A.; Bonivento, D.; Cutruzzolà, F.; Bren, K. L.; Brunori, M. J. Biol. Chem. 2005, 280, 25729-25734.
20. Sambrook, J.; Fritsch, E. F.; Maniatis, T. Molecular Cloning: A Laboratory Manual, 2nd ed.; Cold Spring Harbor Laboratory Press: New York, 1989.
21. Ho, S. N.; Hunt, H. D.; Horton, R. M.; Pullen, J. K.; Pease, L. R. Gene 1989, 77, 51-59.
22. Russell, B. S.; Zhong, L.; Bigotti, M. G.; Cutruzzolà, F.; Bren, K. L. J. Biol. Inorg. Chem. 2003, 8, 156-166.
23. Arslan, E.; Schulz, H.; Zufferey, R.; Kunzler, P.; Thöny-Meyer, L. Biochem. Biophys. Res. Commun. 1998, 251, 744-747.
24. Horio, T.; Higashi, T.; Sasagawa, M.; Kusai, K.; Nakai, M.; Okunuki, K. Biochem. J. 1960, 77, 194-201.
25. La Mar, G. N.; de Ropp, J. S. NMR Methodology for Paramagnetic Proteins. In Biological Magnetic Resonance: NMR of Paramagnetic Molecules; Berliner, L. J., Reuben, J., Eds.; Plenum Press: New York, 1993; Vol. 12, pp 1-78.
26. Wüthrich, K. NMR of Proteins and Nucleic Acids; Wiley: New York, 1986.
27. Detlefsen, D. J.; Thanabal, V.; Pecoraro, V. L.; Wagner, G. Biochemistry 1990, 29, 9377-9386.
28. Reich, H. J. http://www.chem.wisc.edu/areas/reich/plt/windnmr.htm.
29. Emerson, S. D.; Lamar, G. N. Biochemistry 1990, 29, 1556-1566.
30. Harbury, H. A.; Cronin, J. R.; Fabger, M. W.; Hettinger, T. P.; Murphy, A. J.; Myer, Y. P.; Vinogradov, S. N. Proc. Natl. Acad. Sci. U.S.A. 1965, 54, 1658-1664.
31. Senn, H.; Keller, R. M.; Wüthrich, K. Biochem. Biophys. Res. Commun. 1980, 92, 1362-1369.
32. Banci, L.; Bertini, I.; Huber, J. G.; Spyroulias, G. A.; Turano, P. J. Biol. Inorg. Chem. 1999, 4, 21-31.
33. Sandström, J. Dynamic NMR Specctroscopy; Academic Press: London, 1982.
34. Burns, P. D.; Lamar, G. N. J. Biol. Chem. 1981, 256, 4934-4939.
35. Blanchard, L.; Marion, D.; Pollock, B.; Voordouw, G.; Wall, J.; Bruschi, M.; Guerlesquin, F. Eur. J. Biochem. 1993, 218, 293-301.
36. Lee, K.-B.; Lamar, G. N.; Mansfield, K. E.; Smith, K. M.; Pochapsky, T. C.; Sligar, S. G. Biochim. Biophys. Acta 1993, 1202, 189-199.
37. Oosterhuis, W. T.; Lang, G. Phys. Rev. 1969, 178, 439-456.
38. Shokhirev, N. V.; Walker, F. A. J. Am. Chem. Soc. 1998, 120, 981-990.
39. Turner, D. L. Eur. J. Biochem. 1995, 227, 829-837.
40. Walker, F. A. Chem. Rev. 2004, 104, 589-615.
41. Arciero, D. M.; Peng, Q. Y.; Peterson, J.; Hooper, A. B. FEBS Lett. 1994, 342, 217-220.
42. Cross, K. J.; Wright, P. E. J. Magn. Reson. 1985, 64, 220-231.
43. Timkovich, R.; Bergmann, D.; Arciero, D. M.; Hooper, A. B. Biophys. J. 1998, 75, 1964-1972.
44. Cai, M.; Bradford, E. G.; Timkovich, R. Biochemistry 1992, 31, 8603-8612.
45. Cai, M.; Timkovich, R. Biophys. J. 1994, 67, 1207-1215.
46. Santos, H.; Turner, D. L. FEBS Lett. 1986, 194, 73-77.
47. Campos, A. P.; Aguiar, A. P.; Hervas, M.; Regalla, M.; Navarro, J. A.; Ortega, J. M.; Xavier, A. V.; Delarosa, M. A.; Teixeira, M. Eur. J. Biochem. 1993, 216, 329-341.
48. Banci, L.; Bertini, I.; De la Rosa, M. A.; Koulougliotis, D.; Navarro, J. A.; Walter, O. Biochemistry 1998, 37, 4831-4843.
49. Geremia, S.; Garau, G.; Vaccari, L.; Sgarra, R.; Viezzoli, M. S.; Calligaris, M.; Randaccio, L. Protein Sci. 2002, 11, 6-17.
50. Bertini, I.; Luchinat, C.; Macinai, R.; Martinuzzi, S.; Pierattelli, R.; Viezzoli, M. S. Inorg. Chim. Acta 1998, 209, 125-134.
51. Than, M. E.; Hof, P.; Huber, R.; Bourenkov, G. P.; Bartunik, H. D.; Buse, G.; Soulimane, T. J. Mol. Biol. 1997, 271, 629-644.
52. Fee, J. A.; Chen, Y.; Todaro, T. R.; Bren, K. L.; Patel, K. M.; Hill, M. G.; Gomez-Moran, E.; Loehr, T. M.; Ai, J. Y.; Thony-Meyer, L.; Williams, P. A.; Stura, E.; Sridhar, V.; McRee, D. E. Protein Sci. 2000, 9, 2074-2084.
53. Toyota, S. Rev. Hetero. Chem. 1999, 21, 139-162.
54. Berghuis, A. M.; Guillemette, J. G.; McLendon, G.; Sherman, F.; Smith, M.; Brayer, G. D. J. Mol. Biol. 1994, 236, 786-799.
55. Timkovich, R.; Cai, M. L. Biochemistry 1993, 32, 11516-11523.