The effect of cassava mosaic disease on the genetic diversity of cassava in Uganda

Euphytica

Volumn 146, Issue 1-2, 2005, Pages 45-54

  Kizito, Elizabeth Balyejusa ^a,d   Bua, Anton ^b   Fregene, Martin ^c   Egwang, Thomas ^d   Gullberg, Urban ^a   Westerbergh, Anna ^a  

^a SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

^b Namulonge Agricultural and Animal Production Research Institute Uganda   (Uganda)

^c INTERNATIONAL CENTER FOR TROPICAL AGRICULTURE CIAT   (Colombia)

^d Med Biotech Laboratories Uganda   (Uganda)

Author keywords

Cassava; Cassava mosaic disease; CMD; Genetic diversity; Manihot esculenta; SSR markers

Indexed keywords

MANIHOT ESCULENTA;

EID: 28244444596     PISSN: 00142336     EISSN: 15735060     Source Type: Journal    
DOI: 10.1007/s10681-005-2959-3     Document Type: Article

References (40)

1. CIAT, 2003. Annual Report 2003. Project IP-3: Improved Cassava for the developing world, CIAT, Cali, Colombia.
2. Djè, Y., D. Forcioli, M. Ater, Lefèbvre & X. Vekemans, 1999. Assessing population genetic structure of sorghum landraces from North-western Morocco using allozyme and microsatellite markers. Theor Appl Genet 99: 157-163.
3. Djè, Y., M. Heuertz, C. Lefèbvre & X. Vekemans, 2000. Assessment of genetic diversity within and among germplasm accessions in cultivated sorghum using microsatellite markers. Theor Appl Genet 100: 918-925.
4. Doku, G.V., 1969. Cassava in Ghana. Ghana University Press, Accra.
5. Doyle, J.J. & J.L. Doyle, 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19: 11-15.
6. Dubreuil, P. & A. Charcosset, 1998. Genetic diversity within and among maize populations: A comparison between isozyme and nuclear RFLP loci. Theor Appl Genet 96: 577-587.
7. Efron, B., 1982. The Jackknife, the Bootstrap and Other Resampling Plans. CBMS-NSF Regional Conference Series in Applied Mathematics, Monograph 38, SIAM, Philadelphia.
8. Elias, M., L. Penet, P. Vindry, D. MacKey, O. Panaud & T. Robert, 2001. Unmanaged sexual reproduction and the dynamics of genetic diversity of a vegetatively propagated crop plant, cassava (Manihot esculenta Crantz), in a traditional farming system. Mol Ecol 10: 1895-1907.
9. Fauquet, C. & D. Fargette, 1990. African cassava mosaic-virus- etiology, epidemiology and control. Plant Dis 74: 404-411.
10. Fregene, M.A., M. Suarez, J. Mkumbira, H. Kulembeka, E. Ndedya, A. Kullaya, S. Mitchel, U. Gullberg, H. Rosling, A.G.O. Dixon, R. Dean & S. Kresovich, 2003. Simple sequence repeat marker diversity in cassava landraces: Genetic diversity and differentiation in an asexually propagated crop. Theor Appl Genet 107: 1083-1093.
11. Goudet, J., 1995. FSTAT (Version 1.2): A computer program to calculate F-statistics. J Hered 86: 485-186.
12. Jameson, J.D., 1964. Cassava mosaic disease in Uganda. East Afr Agri J 29: 208-213.
13. Jennings, D.L., 1994. Breeding for resistance to African cassava mosaic geminivirus in East Africa. Trop Sci 34: 110-122.
14. Jones, W., 1959. Manioc in Africa. Stanford University Press, Stanford.
15. Kimura, M. & J.T. Crow, 1964. The number of alleles that can be maintained in a finite population. Genetics 49: 725-738.
16. Langlands, B.W., 1966. Cassava in Uganda 1860-1920. Uganda J 30: 211-218.
17. Lefevre, F. & A. Charrier, 1993. Isozyme diversity within African Manihot germplasm. Euphytica 66: 73-80.
18. Martin, E.F., 1928. Report of the mycologist. In: Annual Report of the Department of Agriculture. Government Printer, Entebbe, Uganda, pp. 31.
19. Matsuoka, Y., S.E. Mitchell, S. Kresovich, M. Goodman & J. Doebley, 2002. Microsatellites in Zea - variability, patterns of mutations, and use for evolutionary studies. Theor Appl Genet 104: 436-450.
20. Mba, R.E.C., P. Stephenson, K. Edwards, S. Melzer, J. Mkumbira, U. Gullberg, K. Apel, M. Gale, J. Tohme & M.A. Fregene, 2001. Simple Sequence Repeat (SSR) markers survey of the cassava (Manihot esculenta Crantz) genome: Towards an SSR-based molecular genetic map of cassava. Theor Appl Genet 102: 21-31.
21. Nei, M., 1975. Molecular Population Genetics and Evolution. Amsterdam: North Holland and American Elsevier Pub.
22. Nei, M., 1978. Estimation of average heterozygosity and genetic distances from a small number of individuals. Genetics 89: 583-590.
23. Nweke, F.I. & M. Bokanga, 1994. Importance of cassava processing for production in sub-Saharan Africa. Acta Hort 375: 401-112.
24. Ohta, T. & M. Kimura, 1973. A model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a finite population. Genet Res 22: 201-204.
25. Olsen, K.M. & B.A. Schaal, 1999. Evidence on the origin of cassava: Phylogeography of Manihot esculenta. Proc Natl Acad Sci USA 96: 5586-5591.
26. Olsen, K. & B. Schaal, 2001. Microsatellite variation in cassava Manihot esculenta, Euphorbiaceae and its wild relatives: Evidence for a southern Amazonian origin of domestication. Am J Bot 88: 131-142.
27. Otim-Nape, G.W., T. Alicai & M. Thresh, 2001. Changes in the incidence and severity of Cassava mosaic virus disease, varietal diversity and cassava production in Uganda. Ann Appl Biol 138: 313-327.
28. Otim-Nape, G.W., A. Bua & Y. Baguma, 1994. Accelerating the transfer of improved production technologies: Controlling African cassava mosaic virus disease epidemics in Uganda. Afr Crop Sci J 2: 479-485.
29. Otim-Nape, G.W., A. Bua, I.M. Thresh, Y. Baguma, S. Ogwal, G.N. Semakula, G. Acola, B. Byabakama & A. Martin. 1997. Cassava mosaic virus disease in Uganda: The current pandemic and approaches to control. NARO/DFLD, Chatham, UK, Natural Resources Institute.
30. Otim-Nape, G.W., J.M. Thresh, A. Bua, Y. Baguma & M.W. Shaw, 1998. The incidence and severity of cassava mosaic virus disease in Uganda: 1990-92. Trop Sci 38: 25-37.
31. Pita, J.S., V.N. Fondong, A. Sangare, G.W. Otim-Nape, S. Ogwal & C.M. Fauquet, 2001. Recombination, pseudorecombination and synergism of geminiviruses are determinant keys to the epidemic of severe cassava mosaic disease in Uganda. J Gen Virol 82: 655-665.
32. Quenoille, M., 1956. Notes on bias in estimation. Biometrika 43: 253-260.
33. Resende, A.G., P.S.V. Filho & M.P.S. Machado, 2000. Isozyme diversity in cassava cultivars (Manihot esculenta Crantz). Biochem Genet 38: 203-216.
34. Rohlf, F.J., 1993. NTSYS-PC numerical taxonomy and multivariate analysis system. Version 1.8 Exeter Publ., Setauket, NY.
35. Salick, J., 2001. Diversity, Evolution and Domestication within Manihot. In: Abstracts of the Fifth International Scientific Meeting of the Cassava Biotechnology Network (CBN), Danforth Plant Scientific center, St Louis, Missouri, USA, 4-9 November 2001. http://www.danforthcenter.org/iltab/ cassavanet/cbnv/abstracts/session1/ps1-03.htm.
36. Tang, S. & S.J. Knapp, 2003. Microsatellites uncover extraordinary diversity in native American land races and wild populations of cultivated sunflower. Theor Appl Genet 106: 990-1003.
37. Valdes, A.M., M. Slatkin & N.B. Freimer, 1993. Allele frequencies at microsatellite loci: the stepwise mutation model revisited. Genetics 133: 737-749.
38. Vekemans, X. & C. Lefèbvre, 1997. On the evolution of heavy-metal tolerant populations in Armeria maritima: Evidence from allozyme variation and reproducive barriers. J Evol Biol 10: 175-191.
39. Westby, A., 2002. Cassava utilization, storage and small-scale processing. In: R.J. Hillocks, J.M. Thresh & A.C. Belloti. (Eds.), Cassava: Biology, Production and Utilization, pp. 281-300. CAB International, Wallingford, Oxon, UK.
40. Wright, S., 1965. The interpretation of population structure by F-statistics with special regard to systems of mating. Evolution 19: 395-420.