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Volumn 364, Issue 1-2, 2005, Pages 130-138

Structural characterization of ultra-stable higher-ordered aggregates generated by novel guanine-rich DNA sequences

Author keywords

DNA quadruplex; G quartet; Oligonucleotide; Unusual DNA structure

Indexed keywords

FORMAMIDE; GUANINE; NUCLEASE; OLIGONUCLEOTIDE;

EID: 28244440901     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2005.05.041     Document Type: Conference Paper
Times cited : (28)

References (31)
  • 1
    • 0037452595 scopus 로고    scopus 로고
    • DNA duplex-quadruplex exchange as the basis for a nanomolecular machine
    • P. Alberti, and J.L. Mergny DNA duplex-quadruplex exchange as the basis for a nanomolecular machine Proc. Natl. Acad. Sci. U. S. A. 100 2003 1569 1573
    • (2003) Proc. Natl. Acad. Sci. U. S. A. , vol.100 , pp. 1569-1573
    • Alberti, P.1    Mergny, J.L.2
  • 2
    • 0027990373 scopus 로고
    • Structure and stability of human telomeric sequence
    • P. Balagurumoorthy, and S.K. Brahmachari Structure and stability of human telomeric sequence J. Biol. Chem. 269 1994 21858 21869
    • (1994) J. Biol. Chem. , vol.269 , pp. 21858-21869
    • Balagurumoorthy, P.1    Brahmachari, S.K.2
  • 4
    • 0001624180 scopus 로고    scopus 로고
    • Self-assembly of frayed wires and frayed-wire networks: Nanoconstruction with multistranded DNA
    • M.A. Batalia, E. Protozanova, R.B. Macgregor, and D.A. Erie Self-assembly of frayed wires and frayed-wire networks: nanoconstruction with multistranded DNA Nano Lett. 2 2002 269 274
    • (2002) Nano Lett. , vol.2 , pp. 269-274
    • Batalia, M.A.1    Protozanova, E.2    MacGregor, R.B.3    Erie, D.A.4
  • 5
    • 0033543548 scopus 로고    scopus 로고
    • Antiproliferative activity of G-rich oligonucleotides correlates with protein binding
    • P.J. Bates, J.B. Kahlon, S.D. Thomas, J.O. Trent, and D.M. Miller Antiproliferative activity of G-rich oligonucleotides correlates with protein binding J. Biol. Chem. 274 1999 26369 26377
    • (1999) J. Biol. Chem. , vol.274 , pp. 26369-26377
    • Bates, P.J.1    Kahlon, J.B.2    Thomas, S.D.3    Trent, J.O.4    Miller, D.M.5
  • 6
    • 28244451936 scopus 로고    scopus 로고
    • Single-strand conformation polymorphism (SSCP) of oligodeoxyribonucleotides: An insight into solution structural dynamics of DNAs provided by gel electrophoresis and molecular dynamics simulations
    • submitted for publication.
    • Biyani, M., Nishigaki, K., submitted for publication. Single-strand conformation polymorphism (SSCP) of oligodeoxyribonucleotides: an insight into solution structural dynamics of DNAs provided by gel electrophoresis and molecular dynamics simulations. J. Biochem.
    • J. Biochem.
    • Biyani, M.1    Nishigaki, K.2
  • 7
    • 0029084956 scopus 로고
    • Acid-facilitated supramolecular assembly of G-quadruplexes in d(CGG)4
    • F.M. Chen Acid-facilitated supramolecular assembly of G-quadruplexes in d(CGG)4 J. Biol. Chem. 270 1995 23090 23096
    • (1995) J. Biol. Chem. , vol.270 , pp. 23090-23096
    • Chen, F.M.1
  • 8
    • 0030804196 scopus 로고    scopus 로고
    • Oligodeoxyribonucleotide length and sequence effects on intramolecular and intermolecular G-quartet formation
    • A.J. Cheng, and M.W. Van Dyke Oligodeoxyribonucleotide length and sequence effects on intramolecular and intermolecular G-quartet formation Gene 197 1997 253 260
    • (1997) Gene , vol.197 , pp. 253-260
    • Cheng, A.J.1    Van Dyke, M.W.2
  • 9
    • 0346098140 scopus 로고    scopus 로고
    • Structural studies of oligonucleotides containing G-quadruplex motifs using AFM
    • L.T. Costa Structural studies of oligonucleotides containing G-quadruplex motifs using AFM Biochem. Biophys. Res. Commun. 313 2004 1065 1072
    • (2004) Biochem. Biophys. Res. Commun. , vol.313 , pp. 1065-1072
    • Costa, L.T.1
  • 10
    • 0028949128 scopus 로고
    • Self-assembly of DNA oligomers into high molecular weight species
    • T.Y. Dai, S.P. Marotta, and R.D. Sheardy Self-assembly of DNA oligomers into high molecular weight species Biochemistry 34 1995 3655 3662
    • (1995) Biochemistry , vol.34 , pp. 3655-3662
    • Dai, T.Y.1    Marotta, S.P.2    Sheardy, R.D.3
  • 11
    • 0038476179 scopus 로고    scopus 로고
    • Biophysical and biological properties of quadruplex oligodeoxyribonucleotides
    • V. Dapic Biophysical and biological properties of quadruplex oligodeoxyribonucleotides Nucleic Acids Res. 31 2003 2097 2107
    • (2003) Nucleic Acids Res. , vol.31 , pp. 2097-2107
    • Dapic, V.1
  • 12
    • 0023663911 scopus 로고
    • Telomeric DNA oligonucleotides form novel intramolecular structures containing guanine-guanine base pairs
    • E. Henderson, C.C. Hardin, S.K. Walk, I. Tinoco Jr., and E.H. Blackburn Telomeric DNA oligonucleotides form novel intramolecular structures containing guanine-guanine base pairs Cell 51 1987 899 908
    • (1987) Cell , vol.51 , pp. 899-908
    • Henderson, E.1    Hardin, C.C.2    Walk, S.K.3    Tinoco Jr., I.4    Blackburn, E.H.5
  • 13
    • 0001103466 scopus 로고    scopus 로고
    • Quadruplex structures in nucleic acids
    • M.A. Keniry Quadruplex structures in nucleic acids Biopolymers 56 2001 123 146
    • (2001) Biopolymers , vol.56 , pp. 123-146
    • Keniry, M.A.1
  • 14
    • 0030712117 scopus 로고    scopus 로고
    • The contribution of thymine-thymine interactions to the stability of folded dimeric quadruplexes
    • M.A. Keniry, E.A. Owen, and R.H. Shafer The contribution of thymine-thymine interactions to the stability of folded dimeric quadruplexes Nucleic Acids Res. 25 1997 4389 4392
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4389-4392
    • Keniry, M.A.1    Owen, E.A.2    Shafer, R.H.3
  • 15
    • 0028128406 scopus 로고
    • G-wires: Self-assembly of a telomeric oligonucleotide, d(GGGGTTGGGG), into large superstructures
    • T.C. Marsh, and E. Henderson G-wires: self-assembly of a telomeric oligonucleotide, d(GGGGTTGGGG), into large superstructures Biochemistry 33 1994 10718 10724
    • (1994) Biochemistry , vol.33 , pp. 10718-10724
    • Marsh, T.C.1    Henderson, E.2
  • 16
    • 0028964016 scopus 로고
    • A new DNA nanostructure, the G-wire, imaged by scanning probe microscopy
    • T.C. Marsh, J. Vesenka, and E. Henderson A new DNA nanostructure, the G-wire, imaged by scanning probe microscopy Nucleic Acids Res. 23 1995 696 700
    • (1995) Nucleic Acids Res. , vol.23 , pp. 696-700
    • Marsh, T.C.1    Vesenka, J.2    Henderson, E.3
  • 17
    • 0037440745 scopus 로고    scopus 로고
    • Structural transition from antiparallel to parallel G-quadruplex of d(G4T4G4) induced by Ca2+
    • D. Miyoshi, A. Nakao, and N. Sugimoto Structural transition from antiparallel to parallel G-quadruplex of d(G4T4G4) induced by Ca2+ Nucleic Acids Res. 31 2003 1156 1163
    • (2003) Nucleic Acids Res. , vol.31 , pp. 1156-1163
    • Miyoshi, D.1    Nakao, A.2    Sugimoto, N.3
  • 19
    • 0030448422 scopus 로고    scopus 로고
    • Frayed wires: A thermally stable form of DNA with two distinct structural domains
    • E. Protozanova, and R.B. Macgregor Jr. Frayed wires: a thermally stable form of DNA with two distinct structural domains Biochemistry 35 1996 16638 16645
    • (1996) Biochemistry , vol.35 , pp. 16638-16645
    • Protozanova, E.1    Macgregor Jr., R.B.2
  • 20
    • 0037457909 scopus 로고    scopus 로고
    • Features in short guanine-rich sequences that stimulate DNA polymerization in vitro
    • M.S. Reddy, and S.H. Hardin Features in short guanine-rich sequences that stimulate DNA polymerization in vitro Biochemistry 42 2003 350 362
    • (2003) Biochemistry , vol.42 , pp. 350-362
    • Reddy, M.S.1    Hardin, S.H.2
  • 21
    • 0023788886 scopus 로고
    • Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis
    • D. Sen, and W. Gilbert Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis Nature 334 1988 364 366
    • (1988) Nature , vol.334 , pp. 364-366
    • Sen, D.1    Gilbert, W.2
  • 22
    • 0025269255 scopus 로고
    • A sodium-potassium switch in the formation of four-stranded G4-DNA
    • D. Sen, and W. Gilbert A sodium-potassium switch in the formation of four-stranded G4-DNA Nature 344 1990 410 414
    • (1990) Nature , vol.344 , pp. 410-414
    • Sen, D.1    Gilbert, W.2
  • 23
    • 0026500052 scopus 로고
    • Novel DNA superstructures formed by telomere-like oligomers
    • D. Sen, and W. Gilbert Novel DNA superstructures formed by telomere-like oligomers Biochemistry 31 1992 65 70
    • (1992) Biochemistry , vol.31 , pp. 65-70
    • Sen, D.1    Gilbert, W.2
  • 24
    • 14344275144 scopus 로고    scopus 로고
    • Biological aspects of DNA/RNA quadruplexes
    • Shafer, R.H., Smirnov, I., 2000-2001. Biological aspects of DNA/RNA quadruplexes. Biopolymers 56, 209-227.
    • (2000) Biopolymers , vol.56 , pp. 209-227
    • Shafer, R.H.1    Smirnov, I.2
  • 25
    • 0035018021 scopus 로고    scopus 로고
    • G-quadruplex DNA structures-variations on a theme
    • T. Simonsson G-quadruplex DNA structures-variations on a theme Biol. Chem. 382 2001 621 628
    • (2001) Biol. Chem. , vol.382 , pp. 621-628
    • Simonsson, T.1
  • 26
    • 0032030327 scopus 로고    scopus 로고
    • DNA tetraplex formation in the control region of c-myc
    • T. Simonsson, P. Pecinka, and M. Kubista DNA tetraplex formation in the control region of c-myc Nucleic Acids Res. 26 1998 1167 1172
    • (1998) Nucleic Acids Res. , vol.26 , pp. 1167-1172
    • Simonsson, T.1    Pecinka, P.2    Kubista, M.3
  • 27
    • 0024843757 scopus 로고
    • Telomeric DNA dimerizes by formation of guanine tetrads between hairpin loops
    • W.I. Sundquist, and A. Klug Telomeric DNA dimerizes by formation of guanine tetrads between hairpin loops Nature 342 1989 825 829
    • (1989) Nature , vol.342 , pp. 825-829
    • Sundquist, W.I.1    Klug, A.2
  • 28
    • 4344603154 scopus 로고    scopus 로고
    • Phosphorylation at 5' end of guanosine stretches inhibits dimerization of G-quadruplexes and formation of a G-quadruplex interferes with the enzymatic activities of DNA enzymes
    • M.K. Uddin, Y. Kato, Y. Takagi, T. Mikuma, and K. Taira Phosphorylation at 5' end of guanosine stretches inhibits dimerization of G-quadruplexes and formation of a G-quadruplex interferes with the enzymatic activities of DNA enzymes Nucleic Acids Res. 32 2004 4618 4629
    • (2004) Nucleic Acids Res. , vol.32 , pp. 4618-4629
    • Uddin, M.K.1    Kato, Y.2    Takagi, Y.3    Mikuma, T.4    Taira, K.5
  • 30
    • 0035900673 scopus 로고    scopus 로고
    • Inhibition of DNA replication and induction of S phase cell cycle arrest by G-rich oligonucleotides
    • X. Xu Inhibition of DNA replication and induction of S phase cell cycle arrest by G-rich oligonucleotides J. Biol. Chem. 276 2001 43221 43230
    • (2001) J. Biol. Chem. , vol.276 , pp. 43221-43230
    • Xu, X.1
  • 31
    • 0034951139 scopus 로고    scopus 로고
    • Branched nanowire based guanine rich oligonucleotides
    • C. Zhou Branched nanowire based guanine rich oligonucleotides J. Biomol. Struct. Dyn. 18 2001 807 812
    • (2001) J. Biomol. Struct. Dyn. , vol.18 , pp. 807-812
    • Zhou, C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.