Correlated dynamics of consecutive residues reveal transient and cooperative unfolding of secondary structure in proteins

Proceedings of the National Academy of Sciences of the United States of America

Volumn 102, Issue 47, 2005, Pages 16984-16989

  Lundström, Patrik ^a   Mulder, Frans A A ^a,b   Akke, Mikael ^a  

^a LUND UNIVERSITY   (Sweden)

^b UNIVERSITY OF GRONINGEN   (Netherlands)

Author keywords

Conformational exchange; NMR; Nuclear spin relaxation

Indexed keywords

PROTEIN;

ALPHA HELIX; AMINO ACID SEQUENCE; ARTICLE; ATOM; CARBOXY TERMINAL SEQUENCE; CONFORMATIONAL TRANSITION; MOLECULAR DYNAMICS; MOTION; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN DOMAIN; PROTEIN FOLDING; PROTEIN FUNCTION; PROTEIN STRUCTURE; QUANTUM MECHANICS;

AMINO ACIDS; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN FOLDING; PROTEIN STRUCTURE, SECONDARY; PROTEINS; THERMODYNAMICS;

EID: 28044463992     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0504361102     Document Type: Article

References (52)

1. Malmendal, A., Evenäs, J., Forsén, S. & Akke, M. (1999) J. Mol. Biol. 293, 883-899.
2. Lee, A. L., Kinnear, S. A. & Wand, A. J. (2000) Nat. Struct. Biol. 7, 72-77.
3. Wand, A. J. (2001) Nat. Struct. Biol. 8, 926-931.
4. Mulder, F. A. A., Hon, B., Mittermaier, A., Dahlquist, F. W. & Kay, L. E. (2002) J. Am. Chem. Soc. 124, 1443-1451.
5. Eisenmesser, E. Z., Bosco, D. A., Akke, M. & Kern, D. (2002) Science 295, 1520-1523.
6. Korzhnev, D. M., Salvatella, X., Vendruscolo, M., Di Nardo, A. A., Davidson, A. R., Dobson, C. M. & Kay, L. E. (2004) Nature 430, 586-590.
7. Wolf-Watz, M., Thai, V., Henzler-Wildman, K., Hadjipavlou, G., Eisenmesser, E. Z. & Kern, D. (2004) Nat. Struct. Mol. Biol. 11, 945-949.
8. Palmer, A. G. (2004) Chem. Rev. 104, 3623-3640.
9. Palmer, A. G., Kroenke, C. D. & Loria, J. P. (2001) Methods Enzymol. 339, 204-238.
10. Akke, M. (2002) Curr. Opin. Struct. Biol. 12, 642-647.
11. Evenäs, J., Malmendal, A. & Akke, M. (2001) Structure 9, 185-195.
12. Mulder, F. A. A., Skrynnikov, N. R., Hon, B., Dahlquist, F. W. & Kay, L. E. (2001) J. Am. Chem. Soc. 123, 967-975.
13. Mulder, F. A. A. & Akke, M. (2003) Magn. Reson. Chem. 41, 853-865.
14. Lundström, P. & Akke, M. (2005) J. Biomol. NMR 32, 163-173.
15. Lundström, P. & Akke, M. (2005) Chembiochem 6, 1685-1692.
16. Ishima, R., Wingfield, P. T., Stahl, S. J., Kaufman, J. D. & Torchia, D. A. (1998) J. Am. Chem. Soc. 120, 10534-10542.
17. Mulder, F. A. A., Hon, B., Muhandiram, D. R., Dahlquist, F. W. & Kay, L. E. (2000) Biochemistry 39, 12614-12622.
18. Dittmer, J. & Bodenhausen, G. (2004) J. Am. Chem. Soc. 126, 1314-1315.
19. Lundström, P. & Akke, M. (2004) J. Am. Chem. Soc. 126, 928-935.
20. Orekhov, V. Y., Korzhnev, D. M. & Kay, L. E. (2004) J. Am. Chem. Soc. 126, 1886-1891.
21. Korzhnev, D. M., Kloiber, K. & Kay, L. E. (2004) J. Am. Chem. Soc. 126, 7320-7329.
22. Kumar, A., Christy Rani Grace, R. & Madhu, P. K. (2000) Prog. NMR Spectrosc. 37, 191-319.
23. Schwalbe, H., Carlomagno, T., Hennig, M., Junker, J., Reif, B., Richter, C. & Griesinger, C. (2001) Methods Enzymol. 338, 35-81.
24. Frueh, D. (2002) Prog. NMR Spectrosc. 41, 305-324.
25. Chiarparin, E., Pelupessy, P., Ghose, R. & Bodenhausen, G. (1999) J. Am. Chem. Soc. 121, 6876-6883.
26. Reif, B., Diener, A., Hennig, M., Maurer, M. & Griesinger, C. (2000) J. Magn. Reson. 143, 45-68.
27. Crowley, P., Ubbink, M. & Otting, G. (2000) J. Am. Chem. Soc. 122, 2968-2969.
28. Kloiber, K. & Konrat, R. (2000) J. Am. Chem. Soc. 122, 12033-12034.
29. Skrynnikov, N. R., Konrat, R., Muhandiram, D. R. & Kay, L. E. (2000) J. Am. Chem. Soc. 122, 7059-7071.
30. Chiarparin, E., Pelupessy, P., Ghose, R. & Bodenhausen, G. (2000) J. Am. Chem. Soc. 122, 1758-1761.
31. Wokaun, A. & Ernst, R. R. (1978) Mol. Phys. 36, 317-341.
32. Rance, M. (1988) J. Am. Chem. Soc. 110, 1973-1974.
33. Kloiber, K. & Konrat, R. (2000) J. Biomol. NMR 18, 33-42.
34. Früh, D., Tolman, J. R., Bodenhausen, G. & Zwahlen, C. (2001) J. Am. Chem. Soc. 123, 4810-4816.
35. Vugmeyster, L., Pelupessy, P., Vugmeister, B. E., Abergel, D. & Bodenhausen, G. (2004) C. R. Physique 5, 377-386.
36. Spera, S. & Bax, A. (1991) J. Am. Chem. Soc. 113, 5490-5492.
37. Wishart, D. S. & Case, D. A. (2001) Methods Enzymol. 338, 3-34.
38. Xu, X. P. & Case, D. A. (2002) Biopolymers 65, 408-423.
39. Evenäs, J., Thulin, E., Malmendal, A., Forsén, S. & Carlström, G. (1997) Biochemistry 36, 3448-3457.
40. Evenäs, J., Forsén, S., Malmendal, A. & Akke, M. (1999) J. Mol. Biol. 289, 603-617.
41. Majumdar, A. & Ghose, R. (2004) J. Biomol. NMR 28, 213-227.
42. Wang, C. & Palmer, A. G. (2002) J. Biomol. NMR 24, 263-268.
43. Finn, B. E., Evenäs, J., Drakenberg, T., Waltho, J. P., Thulin, E. & Forsén, S. (1995) Nat. Struct. Biol. 2, 777-783.
44. Tjandra, N. & Bax, A. (1997) J. Am. Chem. Soc. 119, 9576-9577.
45. Gottschalk, G. (1979) Bacterial Metabolism (Springer. New York).
46. Geen, H. & Freeman, R. (1991) J. Magn. Reson. 93, 93-141.
47. Mori, S., Abeygunawardana, C., van Zijl, P. C. M. & Berg, J. M. (1996) J. Magn. Reson. Ser. B 110, 96-101.
48. Mori, S., Berg, J. M. & van Zijl, P. C. M. (1996) J. Biomol. NMR 7, 77-82,
49. Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J. & Bax, A. (1995) J. Biomol. NMR 6, 277-293.
50. Mosteller, F. & Tukey, J. W. (1977) Data Analysis and Regression: A Second Course in Statistics (Addison-Wesley, Reading, MA).
51. Le, H. & Oldfield, E. (1994) J. Biomol. NMR 4, 341-348.
52. Koradi, R., Billeter, M. & Wüthrich, K. (1996) J. Mol. Graph. 14, 51-55.