Characterization of CA XV, a new GPI-anchored form of carbonic anhydrase

Biochemical Journal

Volumn 392, Issue 1, 2005, Pages 83-92

  Hilvo, Mika ^a   Tolvanen, Martti ^a   Clark, Amy ^b   Shen, Bairong ^a   Shah, Gul N ^b   Waheed, Abdul ^b   Halmi, Piia ^a   Hänninen, Milla ^a   Hämäläinen, Jonna M ^a   Vihinen, Mauno ^a   Sly, William S ^b   Parkkila, Seppo ^a,c  

^a UNIVERSITY OF TAMPERE   (Finland)

^b SAINT LOUIS UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c UNIVERSITY OF OULU   (Finland)

Author keywords

Bioinformatics; Carbonic anhydrase XV; Glycosylphosphatidylinositol (GPI) anchor

Indexed keywords

AMINO ACIDS; BRAIN; DATABASE SYSTEMS; GENES; MEMBRANES;

BIOINFORMATICS; CARBONIC ANHYDRASE XV; GLYCOSYLPHOSPHATIDYLINOSITOL (GPI) ANCHOR; ISOENZYME;

ENZYMES;

AMINO ACID; CARBONATE DEHYDRATASE; CARBONATE DEHYDRATASE INHIBITOR; CARBONATE DEHYDRATASE IV; CARBONATE DEHYDRATASE XV; GLYCOSYLPHOSPHATIDYLINOSITOL; ISOENZYME; MEMBRANE PROTEIN; UNCLASSIFIED DRUG;

ANIMAL CELL; ANIMAL TISSUE; ARTICLE; BRAIN; CATALYSIS; CELL STRAIN COS7; CHIMPANZEE; ENZYME ACTIVITY; ENZYME SPECIFICITY; ENZYME STRUCTURE; GENE SEQUENCE; IN SITU HYBRIDIZATION; KIDNEY; MOUSE; MULTIGENE FAMILY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN EXPRESSION; PROTEIN STRUCTURE; PSEUDOGENE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; TESTIS;

AMINO ACID SEQUENCE; ANIMALS; CARBONIC ANHYDRASES; CERCOPITHECUS AETHIOPS; COMPUTATIONAL BIOLOGY; COS CELLS; DISULFIDES; GENE EXPRESSION REGULATION, ENZYMOLOGIC; GLYCOSYLATION; GLYCOSYLPHOSPHATIDYLINOSITOLS; HUMANS; MICE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PAN TROGLODYTES; PHYLOGENY; PROTEIN BINDING; PROTEIN STRUCTURE, QUATERNARY; PSEUDOGENES; RECOMBINANT PROTEINS; SEQUENCE ALIGNMENT;

ANIMALIA; PAN (APE); PAN TROGLODYTES;

EID: 28044448499     PISSN: 02646021     EISSN: None     Source Type: Journal    
DOI: 10.1042/BJ20051102     Document Type: Article

References (46)

1. Lindskog, S. and Silverman, D. N. (2000) The catalytic mechanism of mammalian carbonic anhydrases. In The Carbonic Anhydrases: New Horizons (Chegwidden, W. R., Carter, N. D. and Edwards, Y. H., eds.), pp. 175-195, Birkhäuser Verlag, Basel
2. Sly, W. S. and Hu, P. Y. (1995) Human carbonic anhydrases and carbonic anhydrase deficiencies. Annu. Rev. Biochem. 64, 375-401
3. Hewett-Emmett, D. (2000) Evolution and distribution of the carbonic anhydrase gene families. In The Carbonic Anhydrases: New Horizons (Chegwidden, W. R., Carter, N. D. and Edwards, Y. H., eds.), pp. 29-76, Birhkhäuser Verlag, Basel
4. Lehtonen, J., Shen, B., Vihinen, M., Casini, A., Scozzafava, A., Supuran, C. T., Parkkila, A. K., Saarnio, J., Kivela, A. J., Waheed, A. et al. (2004) Characterization of CA XIII, a novel member of the carbonic anhydrase isoenzyme family. J. Biol. Chem. 279, 2719-2727
5. Fleming, R. E., Parkkila, S., Parkkila, A. K., Rajaniemi, H., Waheed, A. and Sly, W. S. (1995) Carbonic anhydrase IV expression in rat and human gastrointestinal tract regional, cellular, and subcellular localization. J. Clin. Invest. 96, 2907-2913
6. Pastorekova, S., Parkkila, S., Parkkila, A. K., Opavsky, R., Zeinik, V., Saarnio, J. and Pastorek, J. (1997) Carbonic anhydrase IX, MN/CAIX: analysis of stomach complementary DNA sequence and expression in human and rat alimentary tracts. Gastroenterology 112, 398-408
7. +-secreting cells of mouse and rat kidney. J. Histochem. Cytochem. 51, 1217-1224
8. Parkkila, S., Parkkila, A. K., Rajaniemi, H., Shah, G. N., Grubb, J. H., Waheed, A. and Sly, W. S. (2001) Expression of membrane-associated carbonic anhydrase XIV on neurons and axons in mouse and human brain. Proc. Natl. Acad. Sci. U.S.A. 98, 1918-1923
9. Leinonen, J., Parkkila, S., Kaunisto, K., Koivunen, P. and Rajaniemi, H. (2001) Secretion of carbonic anhydrase isoenzyme VI (CA VI) from human and rat lingual serous von Ebner's glands. J. Histochem. Cytochem. 49, 657-662
10. Shah, G. N., Hewett-Emmett, D., Grubb, J. H., Migas, M. C., Fleming, R. E., Waheed, A. and Sly, W. S. (2000) Mitochondrial carbonic anhydrase CA VB: differences in tissue distribution and pattern of evolution from those of CA VA suggest distinct physiological roles. Proc. Natl. Acad. Sci. U.S.A. 97, 1677-1682
11. Nishimori, I. (2004) Acatalytic CAs: Carbonic anhydrase-related proteins. In Carbonic Anhydrase: Its Inhibitors and Activators (Supuran, C. T., Scozzafava, A. and Conway, J., eds.), pp. 25-43, CRC Press, Boca Raton
12. Bonapace, G., Waheed, A., Shah, G. N. and Sly, W. S. (2004) Chemical chaperones protect from effects of apoptosis-inducing mutation in carbonic anhydrase IV identified in retinitis pigmentosa 17. Proc. Natl. Acad. Sci. U.S.A. 101, 12300-12305
13. Kent, W. J. (2002) BLAT - the BLAST-like alignment tool. Genome Res. 12, 656-664
14. Birney, E., Clamp, M. and Durbin, R. (2004) GeneWise and Genomewise. Genome Res. 14, 988-995
15. Notredame, C., Higgins, D. G. and Heringa, J. (2000) T-Coffee: a novel method for fast and accurate multiple sequence alignment. J. Mol. Biol. 302, 205-217
16. Reference deleted
17. Thompson, J. D., Higgins, D. G. and Gibson, T. J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680
18. Swofford, D. L. (2002) PAUP*, Phylogenetic Analysis Using Parsimony (* and Other Methods). Version 4. Sinauer Associates, Sunderland, MA
19. Stams, T., Nair, S. K., Okuyama, T., Waheed, A., Sly, W. S. and Christianson, D. W. (1996) Crystal structure of the secretory form of membrane-associated human carbonic anhydrase IV at 2.8-Å resolution. Proc. Natl. Acad. Sci. U.S.A. 93, 13589-13594
20. Heikinheimo, M., Scandrett, J. M. and Wilson, D. B. (1994) Localization of transcription factor GATA-4 to regions of the mouse embryo involved in cardiac development. Dev. Biol. 164, 361-373
21. Whittington, D. A., Grubb, J. H., Waheed, A., Shah, G. N., Sly, W. S. and Christianson, D. W. (2004) Expression, assay, and structure of the extracellular domain of murine carbonic anhydrase XIV: implications for selective inhibition of membrane-associated isoenzymes. J. Biol. Chem. 279, 7223-7228
22. Lopata, M. A., Cleveland, D. W. and Sollner-Webb, B. (1984) High level transient expression of a chloramphenicol acetyl transferase gene by DEAE-dextran mediated DNA transfection coupled with a dimethyl sulfoxide or glycerol shock treatment. Nucleic Acids Res. 12, 5707-5717
23. Luthman, H. and Magnusson, G. (1983) High efficiency polyoma DNA transfection of chloroquine treated cells. Nucleic Acids Res. 11, 1295-1308
24. Lowry, O. H., Rosebrough, N. J., Farr, A. L. and Randall, R. J. (1951) Protein measurement with the Polin phenol reagent. J. Biol. Chem. 193, 265-275
25. Sundaram, V., Rumbolo, P., Grubb, J., Strisciuglio, P. and Sly, W. S. (1986) Carbonic anhydrase II deficiency: diagnosis and carrier detection using differential enzyme inhibition and inactivation. Am. J. Hum. Genet. 38, 125-136
26. Laemmli, U. K. (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature (London) 227, 680-685
27. Zhu, X. L. and Sly, W. S. (1990) Carbonic anhydrase IV from human lung. Purification, characterization, and comparison with membrane carbonic anhydrase from human kidney. J. Biol. Chem. 265, 8795-8801
28. Waheed, A., Parkkila, S., Zhou, X. Y., Tomatsu, S., Tsuchihashi, Z., Feder, J. N., Schatzman, R. C., Britton, R. S., Bacon, B. R. and Sly, W. S. (1997) Hereditary hemochromatosis: effects of C282Y and H63D mutations on association with beta2-microglobulin, intracellular processing, and cell surface expression of the HFE protein in COS-7 cells. Proc. Natl. Acad. Sci. U.S.A. 94, 12384-12389
29. Waheed, A., Zhu, X. L. and Sly, W. S. (1992) Membrane-associated carbonic anhydrase from rat lung. Purification, characterization, tissue distribution, and comparison with carbonic anhydrase IVs of other mammals. J. Biol. Chem. 267, 3308-3311
30. Waheed, A., Pham, T., Won, M., Okuyama, T. and Sly, W. S. (1997) Human carbonic anhydrase IV: in vitro activation and purification of disulfide-bonded enzyme following expression in Escherichia coli. Protein Expr. Purif. 9, 279-287
31. Hu, P. Y., Waheed, A. and Sly, W. S. (1995) Partial rescue of human carbonic anhydrase II frameshift mutation by ribosomal frameshift. Proc. Natl. Acad. Sci. U.S.A. 92, 2136-2140
32. Karhumaa, P., Parkkila, S., Waheed, A., Parkkila, A. K., Kaunisto, K., Tucker, P. W., Huang, C. J., Sly, W. S. and Rajaniemi, H. (2000) Nuclear NonO/p54(nrb) protein is a nonclassical carbonic anhydrase. J. Biol. Chem. 275, 16044-16049
33. International Human Genome Sequencing Consortiuim (2004) Finishing the euchromatic sequence of the human genome. Nature (London) 431, 931-945
34. Tripp, B. C., Smith, K. and Ferry, J. G. (2001) Carbonic anhydrase: new insights for an ancient enzyme. J. Biol. Chem. 276, 48615-48618
35. Brown, D., Zhu, X. L. and Sly, W. S. (1990) Localization of membrane-associated carbonic anhydrase type IV in kidney epithelial cells. Proc. Natl. Acad. Sci. U.S.A. 87, 7457-7461
36. Fleming, R. E., Crouch, E. C., Ruzicka, C. A. and Sly, W. S. (1993) Pulmonary carbonic anhydrase IV: developmental regulation and cell-specific expression in the capillary endothelium. Am. J. Physiol. 265, L627-L635
37. Sender, S., Gros, G., Waheed, A., Hageman, G. S. and Sly, W. S. (1994) Immunohistochemical localization of carbonic anhydrase IV in capillaries of rat and human skeletal muscle. J. Histochem. Cytochem. 42, 1229-1236
38. Sender, S., Decker, B., Fenske, C. D., Sly, W. S., Carter, N. D. and Gros, G. (1998) Localization of carbonic anhydrase IV in rat and human heart muscle. J. Histochem. Cytochem. 46, 855-861
39. Ghandour, M. S., Langley, O. K., Zhu, X. L., Waheed, A. and Sly, W. S. (1992) Carbonic anhydrase IV on brain capillary endothelial cells: a marker associated with the blood-brain barrier. Proc. Natl. Acad. Sci. U.S.A. 89, 6823-6827
40. Fujikawa-Adachi, K., Nishimori, I., Sakamoto, S., Morita, M., Onishi, S., Yonezawa, S. and Hollingsworth, M. A. (1999) Identification of carbonic anhydrase IV and VI mRNA expression in human pancreas and salivary glands. Pancreas 18, 329-335
41. Parkkila, S., Parkkila, A. K., Juvonen, T., Waheed, A., Sly, W. S., Saarnio, J., Kaunisto, K., Kellokumpu, S. and Rajaniemi, H. (1996) Membrane-bound carbonic anhydrase IV is expressed in the luminal plasma membrane of the human gallbladder epithelium. Hepatology 24, 1104-1108
42. Hageman, G. S., Zhu, X. L., Waheed, A. and Sly, W. S. (1991) Localization of carbonic anhydrase IV in a specific capillary bed of the human eye. Proc. Natl. Acad. Sci. U.S.A. 88, 2716-2720
43. Wistrand, P. J., Carter, N. D., Conroy, C. W. and Mahieu, I. (1999) Carbonic anhydrase IV activity is localized on the exterior surface of human erythrocytes. Acta Physiol. Scand. 165, 211-218
44. - exchanger binds carbonic anhydrase IV. J. Biol. Chem. 277, 25239-25246
45. Alvarez, B. V., Loiselle, F. B., Supuran, C. T., Schwartz, G. J. and Casey, J. R. (2003) Direct extracellular interaction between carbonic anhydrase IV and the human NBC1 sodium/bicarbonate co-transporter. Biochemistry 42, 12321-12329
46. Rebello, G., Ramesar, R., Vorster, A., Roberts, L., Ehrenreich, L., Oppon, E., Gama, D., Bardien, S., Greenberg, J., Bonapace, G. et al. (2004) Apoptosis-inducing signal sequence mutation in carbonic anhydrase IV identified in patients with the RP17 form of retinitis pigmentosa. Proc. Natl. Acad. Sci. U.S.A. 101, 6617-6622