Genetic variation among isolates of Alternaria spp. from select Egyptian crops

Archives of Phytopathology and Plant Protection

Volumn 38, Issue 2, 2005, Pages 77-89

  Gherbawy, Youssuf A M H ^a  

^a SOUTH VALLEY UNIVERSITY   (Egypt)

Author keywords

Phylogenetic, pathogenicity; RAPD PCR; Tomato

Indexed keywords

ALTERNARIA; ALTERNARIA ALTERNATA; LYCOPERSICON ESCULENTUM; STEMPHYLIUM;

EID: 27844482214     PISSN: 03235408     EISSN: 14772906     Source Type: Journal    
DOI: 10.1080/03235400400027390     Document Type: Article

References (46)

1. Adachi Y, Watanabe H, Tanabe K, Doke N, Nishimura S, Tsuge T. 1993. Nuclear ribosomal DNA as a probe for genetic variability in the Japanese pear pathotype of Alternaria alternata. Appl Environ Microbiol 59:3197-3205.
2. Akimitsu K, Peever TL, Timmer LW. 2003. Molecular, ecological and evolutionary approaches to understanding Alternaria diseases of citrus. Molec Plant Pathol 4: 435-446.
3. Assigbetse KB, Fernandez D, Doubios MP, Geiger JP. 1994. Differentiation of Fusarium oxysporum f. sp. vasinfectum races on cotton by random amplified polymorphic DNA (RAPD) analysis. Phytopathology 84:622-626.
4. Chou HH, Wu WS. 2002. Phylogenetic analysis of internal transcribed spacer regions of the genus Alternaria, and the significance of filament-beaked conidia. Mycolog Res 106:164-169.
5. Cooke DEL, Forster JW, Jenkins PD, Jones DG, Lewis DM. 1998. Analysis of intraspecific and interspecific variation in the genus Alternaria by the use of RAPD-PCR. Ann Appl Biol 132:197-209.
6. Demeke T, Adams RP, Chibbar R. 1992. Potential use of random amplified polymorphic DNA (RAPD): A case study in Brassica. Theor Appl Genet 84:990-994.
7. Elliott JA. 1917. Taxonomic characters of the genera Alternaria and Macrosporium. Am J Botany 4:439-476.
8. Ellis MB. 1971. Dematiaceous hyphomycetes. Kew, UK: Commonwealth Mycological Institute.
9. Ellis MB. 1976. More dematiaceous hyphomycetes. Kew, UK: International Mycological Institute.
10. Gherbawy YAMH. 1999. RAPD profile analysis of isolates belonging to different formae speciales of Fusarium oxysporum. Cytologia 64:269-276.
11. Gherbawy YAMH. 2001. Use of RAPD-PCR to characterize Eurotium strains isolated from date fruits. Cytologia 66:349-356.
12. Gherbawy YAMH, Abdelzaher HMA. 2002. Using of RAPD-PCR for Separation of Pythium spinosum Sawada into two varieties: var. spinosum and var. sporangiiferum. Cytologia 67:83-94.
13. Gordon TR, Marlyn RD. 1997. The evolutionary biology of Fusarium oxysporum. Ann Rev Phytopathol 35:111-128.
14. Groth JV, McCain JW, Roelf AP. 1995. Virulence and isozyme diversity of sexual versus asexual collections of Uromyces appendiculatus (bean rust fungus). Heredity 72:234-242.
15. Halmschlager E, Messner R, Kowalski T, Prillinger H. 1994. Differentiation of Ophiostoma piceae and Ophiostoma quercus by morphology and RAPD-analysis. System Appl Microbiol 17:554-562.
16. Holmes GJ, Eckert JW, Pitt JI. 1994. Revised description of Penicillium ulainse and its role as a pathogen of citrus fruits. Phytopathology 85:522-527.
17. Jasalavich CA, Morales VM, Pelcher LE, Seguin-Swartz G. 1995. Comparison of nuclear ribosomal DNA sequences from Alternaria species pathogenic to crucifers. Mycolog Res 99:604-614.
18. Kosiak B, Torp M, Skjerve E, Andersen B. 2004. Alternaria and Fusarium in Norwegian grains of reduced quality - a matched pair sample study. Int J Food Microbiol 15:51-62.
19. Kusaba M, Tsuge T. 1994. Nuclear ribosomal DNA variation and pathogenic specialization in Alternaria fungi known to produce host-specific toxins. Appl Environ Microbiol 60:3055-3062.
20. Kusaba M, Tsuge T. 1995. Phylogeny of Alternaria fungi known to produce host-specific toxins on the basis of variation in internal transcribed spacers of ribosomal DNA. Current Genetics 28:491-498.
21. Lynch M, Milligan BG. 1994. Analysis of population genetic structure with RAPD markers. Mol Ecol 3:91-100.
22. Messner R, Prillinger H, Altmann F, Kopandic K, Wimmer K, Molnar O, Weigang F. 1994. Molecular characterisation and application of random amplified polymorph DNA analysis of Markia and Sterigmatomyces species. Inter J Syst Bacteriol 44:694-703.
23. Milgroom MG, Fary WE. 1997. Contribution of population genetics to plant disease epidemiology and management. Adv Bot Res 24:1-30.
24. Moeller EM, Bahnweg G, Sandermann H, Geiger H. 1992. A simple and efficient protocol for isolation of high molecular weight DNA from filamentous fungi, fruit bodies and infected plant tissue. Nucleic Acid Res 20:6115-6116.
25. Morris PF, Connolly MS, St Clair DA. 2000. Genetic diversity of Alternaria alternata isolated from tomato in California assessed using RAPDs. Mycolog Res 104:286-292.
26. Nishimura S, Sugihara M, Kohmoto K, Otani H. 1978. Two different phases in the pathogenicity of Alternaria pathogen causing black spot disease of Japanese pear. J Fac Agric Tottori University 13:1-10.
27. Nishimura S, Kohmoto K, Otani H, Ramachandran P, Tamura F. 1982. Pathological and epidemiological aspects of Alternaria alternata infection depending on a host-specific toxin. In: Asada, X. et al., editor. Plant infection: the physiological and biochemical basis. Berlin: Springer, p100-116.
28. Nei M, Li WH. 1979. Mathematical model for studying genetic variation in terms of restriction endonuclease. Proc Natl Acad Sci USA 76:5269-5273.
29. Peever TL, Ibanez A, Akimitsu K, Timmer LW. 2002. Worldwide phylogeography of the citrus brown spot pathogen, Alternaria alternata. Phytopathology 92:794-802.
30. Peever TL, Su G, Carpenter-Boggs L, Timmer LW. 2004. Molecular systematics of citrus-associated, Alternaria species. Mycologia 96:119-134.
31. Pryor BM, Gilbertson RL. 2000. Molecular phylogenetic relationships amongst Alternaria species and related fungi based upon analysis of nuclear ITS and MT SSU rDNA sequences. Mycolog Res 140:1312-1321.
32. Pryor BM, Gilbertson RL. 2002. Relationships and taxonomic status of Alternaria radicina, A. carotiincultae, and A. petroselini based upon morphological, biochemical, and molecular characteristics. Mycologia 94:49-61
33. Pryor BM, Michailides TJ. 2002. Morphological, pathogenic, and molecular characterization of Alternaria isolates associated with Alternaria late blight of pistachio. Phytopathology 92:406-416.
34. Rotem J. 1994. The genus Alternaria: Biology, epidemiology and pathogenicity. St Paul, MN: APS Press.
35. Roberts RG, Reymond ST, Anderson B. 2000. RAPD fragment pattern analysis and morphological segregation of small-spored Alternaria species and species group. Mycolog Res 104:151-160.
36. Satyaprasad K, Bateman GL, Ward E. 2000. Comparisons of isolates of Fusarium avenaceum from white lupine and other crops by pathogenicity tests, DNA analysis and vegetative compatibility tests. Phytopathology 148:211-219.
37. Shabana YM, Charudattan R, Elwakil MA. 1995. Identification, pathogenicity, and safety of Alternaria eichhorniae from Egypt as a bioherbicide agent for water hyacinth. Biolog Control 5:123-135.
38. Simmons EG. 1967. Typification of Alternaria, Stemphylium, and Ulocladium. Mycologia 59:67-92.
39. Simmons EG. 1986. Alternaria themes and variations (22-26). Mycotaxon 25:287-308.
40. Simmons EG. 1992. Alternaria taxonomy: Current status, viewpoint, challenge. In: Chelkowski J, Visconti A, editors. Alternaria: Biology, plant diseases and metabolites. Amsterdam: Elsevier; p 91-107.
41. Solel, Z. (1991) Alternaria brown spot of Minneola tangelos in Israel. Plant Pathol 40:145-147.
42. Strandberg JO. 1992. Evaluation of plant introductions of Daucus species for tolerance of Alternaria dauci and some other horticultural characteristics. University of Florida, Central Florida Research and Education Centre Research Report SAN 93-03. 48.
43. Thomma BPHJ. 2003. Alternaria spp.: from general saprophyte to specific parasite. Molec Plant Pathol 4:225-236.
44. Weir TL, Huff DR, Christ BJ, Romaine CP. 1998. RAPD-PCR analysis of genetic variation among isolates of Alternaria solani and Alternaria alternata from potato and tomato. Mycologia 90:813-821.
45. Williams JGK, Kubelic AR, Livak KJ, Rafalski JA, Tingey SV. 1990. DNA polymorphisms amplified by arbitray primers are useful as genetic markers. Nucleic Acids Res 18:6531-6535.
46. Wiltshire SP. 1947. Species of Alternaria on brassicae. Mycolog Paper 20:1-15.