Characterization of the highly variable region surrounding the blaCTX-M-9 gene in non-related Escherichia coli from Barcelona

Journal of Antimicrobial Chemotherapy

Volumn 56, Issue 5, 2005, Pages 819-826

  García, Aurora ^a,b   Navarro, Ferran ^a,b   Miró, Elisenda ^a   Mirelis, Beatriz ^a,b   Campoy, Susana ^b   Coll, Pere ^a,b  

^a HOSPITAL DE LA SANTA CREU I SANT PAU   (Spain)

^b UNIVERSITAT AUTÒNOMA DE BARCELONA   (Spain)

Author keywords

lactamases; Integrons; Plasmids

Indexed keywords

BACTERIAL DNA; BETA LACTAMASE; NUCLEASE S1; PLASMID DNA;

ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CLONAL VARIATION; CONTROLLED STUDY; DNA HYBRIDIZATION; ESCHERICHIA COLI; GENE DELETION; GENE INSERTION; GENE MAPPING; GENE PROBE; GENE STRUCTURE; GENETIC ANALYSIS; INTEGRON; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASMID; POLYMERASE CHAIN REACTION; PULSED FIELD GEL ELECTROPHORESIS; SPAIN;

BASE SEQUENCE; BETA-LACTAMASES; CHROMOSOMES, BACTERIAL; DNA FINGERPRINTING; DNA TRANSPOSABLE ELEMENTS; DNA, BACTERIAL; ELECTROPHORESIS, GEL, PULSED-FIELD; EPIDEMIOLOGY, MOLECULAR; ESCHERICHIA COLI; ESCHERICHIA COLI INFECTIONS; ESCHERICHIA COLI PROTEINS; GENE ORDER; HUMANS; INTEGRONS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PLASMIDS; POLYMERASE CHAIN REACTION; POLYMORPHISM, GENETIC; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; SPAIN;

EID: 27744561623     PISSN: 03057453     EISSN: 14602091     Source Type: Journal    
DOI: 10.1093/jac/dki345     Document Type: Article

References (53)

1. Mamun KZ, Shears P, Hart CA. The prevalence and genetics of resistance to commonly used antimicrobial agents in faecal Enterobacteriaceae from children in Bangladesh. Epidemiol Infect 1993; 110: 447-58.
2. Hall RM. Mobile gene cassettes and integrons: Moving antibiotic resistance genes in gram-negative bacteria. Ciba Found Symp 1997; 207: 192-202; discussion 202-5.
3. Peters ED, Leverstein-van Hall MA, Box AT et al. Novel gene cassettes and integrons. Antimicrob Agents Chemother 2001; 45: 2961-4.
4. Guessouss M, Ben-Mahrez K, Belhadj C et al. Characterization of the drug resistance plasmid R2418: Restriction map and role of insertion and deletion in its evolution. Can J Microbiol 1996; 42: 12-8.
5. Scott KP. The role of conjugative transposons in spreading antibiotic resistance between bacteria that inhabit the gastrointestinal tract. Cell Mol Life Sci 2002; 59: 2071-82.
6. Partridge SR, Hall RM. In34, a complex In5 family class 1 integron containing orf513 and dfrA10. Antimicrob Agents Chemother 2003; 47: 342-9.
7. Bradley DE, Taylor DE, Levy SB et al. pIN32: A cointegrate plasmid with IncHI2 and IncFII components. J Gen Microbiol 1986; 132: 1339-46.
8. Verdet C, Arlet G, Barnaud G et al. A novel integron in Salmonella enterica serovar Enteritidis, carrying the bla(DHA-1) gene and its regulator gene ampR, originated from Morganella morganii. Antimicrob Agents Chemother 2000; 44: 222-5.
9. Stokes HW, Tomaras C, Parsons Y et al. The partial 3′-conserved segment duplications in the integrons In6 from pSa and In7 from pDGO100 have a common origin. Plasmid 1993; 30: 39-50.
10. Martínez-Freijó P, Fluit AC, Schmitz FJ et al. Class I integrons in Gram-negative isolates from different European hospitals and association with decreased susceptibility to multiple antibiotic compounds. J Antimicrob Chemother 1998; 42: 689-96.
11. Partridge SR, Brown HJ, Stokes HW et al. Transposons Tn1696 and Tn21 and their integrons In4 and In2 have independent origins. Antimicrob Agents Chemother 2001; 45: 1263-70.
12. Stokes HW, Hall RM. A novel family of potentially mobile DNA elements encoding site-specific gene-integration functions: Integrons. Mol Microbiol 1989; 3: 1669-83.
13. Brown HJ, Stokes HW, Hall RM. The integrons In0, In2, and In5 are defective transposon derivatives. J Bacteriol 1996; 178: 4429-37.
14. CTX-M β-lactamase gene. Antimicrob Agents Chemother 2003; 47: 2938-45.
15. IMP-13, harboured by a novel Tn5051-type transposon disseminating carbapenemase genes in Europe: report from the SENTRY worldwide antimicrobial surveillance programme. J Antimicrob Chemother 2003; 52: 583-90.
16. Sabaté M, Tarragó R, Navarro F et al. Cloning and sequence of the gene encoding a novel cefotaxime-hydrolyzing β-lactamase (CTX-M-9) from Escherichia coli in Spain. Antimicrob Agents Chemother 2000; 44: 1970-3.
17. Sabaté M, Navarro F, Miró E et al. Novel complex sul1-type integron in Escherichia coli carrying bla(CTX-M-9). Antimicrob Agents Chemother 2002; 46: 2656-61.
18. Sambrook J, Fritsch E, Maniatis T. Molecular Cloning: A Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press, 1989.
19. Jaenecke S, de Lorenzo V, Timmis KN et al. A stringently controlled expression system for analysing lateral gene transfer between bacteria. Mol Microbiol 1996; 21: 293-300.
20. Miró E, del Cuerpo M, Navarro F et al. Emergence of clinical Escherichia coli isolates with decreased susceptibility to ceftazidime and synergic effect with co-amoxiclav due to SHV-1 hyperproduction. J Antimicrob Chemother 1998; 42: 535-8.
21. Barton BM, Harding G P, Zuccarelli AJ. A general method for detecting and sizing large plasmids. Anal Biochem 1995; 226: 235-40.
22. Liu SL, Hessel A, Sanderson KE. Genomic mapping with I-CeuI, an intron-encoded endonuclease specific for genes for ribosomal RNA, in Salmonella spp., Escherichia coli, and other bacteria. Proc Natl Acad Sci USA 1993; 90: 6874-8.
23. Tenover FC, Arbeit RD, Goering RV et al. Interpreting chromosomal DNA restriction patterns produced by pulsed-field gel electrophoresis: criteria for bacterial strain typing. J Clin Microbiol 1995; 33: 2233-9.
24. Hielm S, Bjorkroth J, Hyytia E et al. Genomic analysis of Clostridium botulinum group II by pulsed-field gel electrophoresis. Appl Environ Microbiol 1998; 64: 703-8.
25. Marois C, Dufour-Gesbert F, Kempf I. Comparison of pulsed-field gel electrophoresis with random amplified polymorphic DNA for typing of Mycoplasma synoviae. Vet Microbiol 2001; 79: 1-9.
26. Prats G, Navarro F, Mirelis B et al. Escherichia coli serotype O15:K52:H1 as a uropathogenic clone. J Clin Microbiol 2000; 38: 201-9.
27. Perna NT, Mayhew GF, Posfai G et al. Molecular evolution of a pathogenicity island from enterohemorrhagic Escherichia coli O157:H7. Infect Immun 1998; 66: 3810-7.
28. Wrighton CJ, Strike P. A pathway for the evolution of the plasmid NTP16 involving the novel kanamycin resistance transposon Tn4352. Plasmid 1987; 17: 37-45.
29. Wang M, Tran JH, Jacoby GA et al. Plasmid-mediated quinolone resistance in clinical isolates of Escherichia coli from Shanghai, China. Antimicrob Agents Chemother 2003; 47: 2242-8.
30. Simarro E, Navarro F, Ruiz J et al. Salmonella enterica serovar Virchow with CTX-M-like β-lactamase in Spain. J Clin Microbiol 2000; 38: 4676-8.
31. Bonnet R. Growing group of extended-spectrum β-lactamases: The CTX-M enzymes. Antimicrob Agents Chemother 2004; 48: 1-14.
32. Weill FX, Lailler R, Praud K et al. Emergence of extended-spectrum-β-lactamase (CTX-M-9)-producing multiresistant strains of Salmonella enterica serotype Virchow in poultry and humans in France. J Clin Microbiol 2004; 42: 5767-73.
33. Eckert C, Gautier V, Saladin-Allard M et al. Dissemination of CTX-M-type β-lactamases among clinical isolates of Enterobacteriaceae in Paris, France. Antimicrob Agents Chemother 2004; 48: 1249-55.
34. Simon R, Hotte B, Klauke B et al. Isolation and characterization of insertion sequence elements from gram-negative bacteria by using new broad-host-range, positive selection vectors. J Bacteriol 1991; 173: 1502-8.
35. Yagi T, Kurokawa H, Shibata N et al. A preliminary survey of extended-spectrum β-lactamases (ESBLs) in clinical isolates of Klebsiella pneumoniae and Escherichia coli in Japan. FEMS Microbiol Lett 2000; 184: 53-6.
36. Chanawong A, M'Zali FH, Heritage J et al. Three cefotaximases, CTX-M-9, CTX-M-13, and CTX-M-14, among Enterobacteriaceae in the People's Republic of China. Antimicrob Agents Chemother 2002; 46: 630-7.
37. Yagi T, Kurokawa H, Senda K et al. Nosocomial spread of cephem-resistant Escherichia coli strains carrying multiple Toho-1-like β-lactamase genes. Antimicrob Agents Chemother 1997; 41: 2606-11.
38. Avison MB, von Heldreich CJ, Higgins CS et al. A TEM-2 β-lactamase encoded on an active Tn1-like transposon in the genome of a clinical isolate of Stenotrophomonas maltophilia. J Antimicrob Chemother 2000; 46: 879-84.
39. Naas T, Mikami Y, Imai T et al. Characterization of In53, a class 1 plasmid- and composite transposon-located integron of Escherichia coli which carries an unusual array of gene cassettes. J Bacteriol 2001; 183: 235-49.
40. Lartigue MF, Poirel L, Nordmann P. Diversity of genetic environment of bla(CTX-M) genes. FEMS Microbiol Lett 2004; 234: 201-7.
41. Saladin M, Cao VT, Lambert T et al. Diversity of CTX-M β-lactamases and their promoter regions from Enterobacteriaceae isolated in three Parisian hospitals. FEMS Microbiol Lett 2002; 209: 161-8.
42. Adrian PV, Thomson CJ, Klugman KP et al. New gene cassettes for trimethoprim resistance, dfr13, and streptomycin-spectinomycin resistance, aadA4, inserted on a class 1 integron. Antimicrob Agents Chemother 2000; 44: 355-61.
43. Lee KY, Hopkins JD, Syvanen M. Direct involvement of IS26 in an antibiotic resistance operon. J Bacteriol 1990; 172: 3229-36.
44. Martín C, Gómez-Lus R, Ortiz JM et al. Structure and mobilization of an ampicillin and gentamicin resistance determinant. Antimicrob Agents Chemother 1987; 31: 1266-70.
45. Mollet B, Clerget M, Meyer J et al. Organization of the Tn6-related kanamycin resistance transposon Tn2680 carrying two copies of IS26 and an IS903 variant, IS903-B. J Bacteriol 1985; 163: 55-60.
46. Sundstrom L, Jansson C, Bremer K et al. A new dhfrVIII trimethoprim-resistance gene, flanked by IS26, whose product is remote from other dihydrofolate reductases in parsimony analysis. Gene 1995; 154: 7-14.
47. CTX-M-2 is located in an unusual class 1 integron (In35) which includes Orf513. Antimicrob Agents Chemother 2002; 46: 2303-6.
48. CTX-M-2 in Salmonella enterica serovar Infantis. Antimicrob Agents Chemother 2002; 46: 2257-61.
49. Boyd D, Cloeckaert A, Chaslus-Dancla E et al. Characterization of variant Salmonella genomic island 1 multidrug resistance regions from serovars Typhimurium DT104 and Agona. Antimicrob Agents Chemother 2002; 46: 1714-22.
50. Boyd EF, Hill CW, Rich SM et al. Mosaic structure of plasmids from natural populations of Escherichia coli. Genetics 1996; 143: 1091-100.
51. Schlüter A, Heuer H, Szczepanowski R et al. The 64508 bp IncP-1β antibiotic multiresistance plasmid pB10 isolated from a waste-water treatment plant provides evidence for recombination between members of different branches of the IncP-1β group. Microbiology 2003; 149: 3139-53.
52. Sabaté M, Vergés C, Miró E et al. Incidence of extended spectrum β-lactamase in Escherichia coli in a university hospital from 1994-1996. Enfer Infecc Microbiol Clin 1999; 17: 401-4.
53. Lane D. 16S/23S sequencing. In: Stackebrandt E, Goodfellow M, eds. Nucleic Acid Techniques in Bacterial Systematics. Chichester: John Wiley, 1991; 115-76.