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Volumn 143, Issue 3, 1996, Pages 1091-1100

Mosaic structure of plasmids from natural populations of Escherichia coli

Author keywords

[No Author keywords available]

Indexed keywords

PLASMID DNA;

EID: 0029888490     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (107)

References (47)
  • 2
    • 0028178312 scopus 로고
    • Genetic variation in IncIl-CoIIb plasmids
    • AYAIA, F. J., D. E. KRANE and D. L. HARTL, 1994 Genetic variation in IncIl-CoIIb plasmids. J. Mol. Evol. 39: 129-133.
    • (1994) J. Mol. E , vol.39 , pp. 129-133
    • Ayaia, F.J.1    Krane, D.E.2    Hartl, D.L.3
  • 3
    • 0023672263 scopus 로고
    • Comparative nucleotide sequence analysis of growth-rate-regulated grjrfalleles from natural isolates of Escherichia coli and Salmonella typhimurium LT-2.J
    • BARCAK, G. J., and R. E. WOLF, 1988 Comparative nucleotide sequence analysis of growth-rate-regulated grjrfalleles from natural isolates of Escherichia coli and Salmonella typhimurium LT-2.J. Bacteriol. 170: 372-379.
    • (1988) Bacteriol. , vol.170 , pp. 372-379
    • Barcak, G.J.1    Wolf, R.E.2
  • 4
    • 0022591698 scopus 로고
    • Distribution of basic replicons having homolog- With RepFIA, RepFIB, and RepFIC among IncF plasmids
    • BERGQUIST, P. L., S. SAADI and W. K. MAAS, 1986 Distribution of basic replicons having homolog)- with RepFIA, RepFIB, and RepFIC among IncF plasmids. Plasmid 15: 19-34.
    • (1986) Plasmid , vol.15 , pp. 19-34
    • Bergquist, P.L.1    Saadi, S.2    Maas, W.K.3
  • 5
    • 0028053174 scopus 로고
    • Molecular genetic basis of allelic poITnorphism in malate dehydrogenase (mdh) in natural populations of Escherichia coli and Salmonella enlerica
    • BOYD, E. F., K. NELSON', F.-S. WANG, T. S. WHITTAM and R. K. SELANDER, 1994 Molecular genetic basis of allelic poI)Tnorphism in malate dehydrogenase (mdh) in natural populations of Escherichia coli and Salmonella enlerica. Proc. Nail. Acad. Sei. USA 91: 1280-1284.
    • (1994) Proc. Nail. Acad. Sei. USA , vol.91 , pp. 1280-1284
    • Boyd, E.F.1    Nelson, K.2    Wang, F.-S.3    Whittam, T.S.4    Selander, R.K.5
  • 6
    • 0025820458 scopus 로고
    • Nucleotide sequences of the gitd genes from nine natural isolates of Escherichia coli: Evidence of inlragenic recombination as a contributing factor in the evolution of the polymorphic gnd locus
    • BISERCIC, M., J. Y. FEUTRIER and P. R. REEVES, 1991 Nucleotide sequences of the gitd genes from nine natural isolates of Escherichia coli: evidence of inlragenic recombination as a contributing factor in the evolution of the polymorphic gnd locus. J. Bacteriol. 173: 3894-3900.
    • (1991) J. Bacteriol. , vol.173 , pp. 3894-3900
    • Bisercic, M.1    Feutrier, J.Y.2    Reeves, P.R.3
  • 7
    • 0025826535 scopus 로고
    • Sequence and conservation of genes at the distal end of the transfer region on plasmid F and R6-5
    • CRAM, D. S., S. M. LOH, K.-C. CHEAII and R. A. SKURRAY, 1991 Sequence and conservation of genes at the distal end of the transfer region on plasmid F and R6-5. Gene 104: 85-90.
    • (1991) Gene , vol.104 , pp. 85-90
    • Cram, D.S.1    Loh K-C Cheaii, S.M.2    Skurray, R.A.3
  • 8
    • 0024077312 scopus 로고
    • Genetic exchange among natural isolates of bacteria: Recombination within the phoA gene of Escherichia coli
    • DUBOSE, F., D. E. DVKHUIZEN and D. L. HARTL, 1988 Genetic exchange among natural isolates of bacteria: recombination within the phoA gene of Escherichia coli. Proc. Natl. Acad. Sei. USA 85: 7036-7040.
    • (1988) Proc. Natl. Acad. Sei. USA , vol.85 , pp. 7036-7040
    • Dubose, F.1    Dvkhuizen, D.E.2    Hartl, D.L.3
  • 9
    • 0025788069 scopus 로고
    • Recombination in Escherichia coli and the definition of biological species
    • DYKHUIZEN, D. E., and L. GREEN, 1991 Recombination in Escherichia coli and the definition of biological species. J. Bacteriol. 173: 7257-7268. ,
    • (1991) J. Bacteriol. , vol.173 , pp. 7257-7268
    • Dykhuizen, D.E.1    Green, L.2
  • 10
    • 0022570862 scopus 로고
    • Nucleotide sequences of the Rl-19 plasmid transfer genes traM, finP, Ira, and mzKand the traYZpromoter
    • FINLAY, B. B, L. S. FROST and W. PARANCHYCH, 1986a Nucleotide sequences of the Rl-19 plasmid transfer genes traM, finP, Ira], and mzKand the traYZpromoter. J. Bacteriol. 166: 368-374.
    • (1986) J. Bacteriol. , vol.166 , pp. 368-374
    • Finlay, B.1    Frost, B.L.S.2    Paranchych, W.3
  • 11
    • 0022441364 scopus 로고
    • Origin of transfer of incF plasmids and nucleotide sequences of the type II oriT, traM, and traY alleles from ColB4-K98 and the type W /raKallele from R100-1
    • FINLAY, B. B, L. S. FROST and W. PARANCHYCH, 1986b Origin of transfer of incF plasmids and nucleotide sequences of the type II oriT, traM, and traY alleles from ColB4-K98 and the type W /raKallele from R100-1. J. Bacteriol. 168: 132-139.
    • (1986) J. Bacteriol. , vol.168 , pp. 132-139
    • Finlay, B.B.1    Frost, L.S.2    Paranchych, W.3
  • 12
    • 0027157128 scopus 로고
    • RepFIB: A basic replicon of large plasmids
    • GIBES, M. D., A. J. SPIERS and P. L. BERCQUIST, 1993 RepFIB: a basic replicon of large plasmids. Plasmid 29: 165-179.
    • (1993) Plasmid , vol.29 , pp. 165-179
    • Gibes, M.D.1    Spiers, A.J.2    Bercquist, P.L.3
  • 13
    • 0021132123 scopus 로고
    • Distribution of DNA insertion element IS5 in natural isolates of Escherichia coli
    • GREEN, L., R. D. MILLER, D. E. DYKHUIZEN and D. L. HARTL, 1984 Distribution of DNA insertion element IS5 in natural isolates of Escherichia coli. Proc. Natl. Acad. Sei. USA 81: 4500-4504.
    • (1984) Proc. Natl. Acad. Sei. USA , vol.81 , pp. 4500-4504
    • Green, L.1    Miller, R.D.2    Dykhuizen, D.E.3    Hartl, D.L.4
  • 14
    • 0026720394 scopus 로고
    • Molecular population genetics of Escheiichia coli: DN'A sequence diversity at the celC, err, and gulB\oc\ of natural isolates
    • HALL, B. G., and P. M. SHARP, 1992 Molecular population genetics of Escheiichia coli: DN'A sequence diversity at the celC, err, and gulB\oc\ of natural isolates. Mol. Biol. Evol. 9: 654-665.
    • (1992) Mol. Biol. E , vol.9 , pp. 654-665
    • Hall, B.G.1    Sharp, P.M.2
  • 16
    • 0025096192 scopus 로고
    • Phylogenetic distribution of branched RNA-linked multicopy singlestranded DNA among natural isolates of Escherichia coli
    • HERZER,P.J.,S.lN'OUYE,M.lNOlJYEandT.S.WHnTAM, 1990 Phylogenetic distribution of branched RNA-linked multicopy singlestranded DNA among natural isolates of Escherichia coli. J. Bacteriol. 172: 6175-6181.
    • (1990) J. Bacteriol. , vol.172 , pp. 6175-6181
    • Herzer, P.J.1
  • 17
    • 0029098090 scopus 로고
    • Correlation of Rlis elements with Escherichia coli population structure
    • HILL C. W., G. FEULNER, M. S. BRODY, S. ZHAO, A. B. SADOSKY et al., 1995 Correlation of Rlis elements with Escherichia coli population structure. Genetics 141: 15-24.
    • (1995) Genetics , vol.141 , pp. 15-24
    • Hill, C.W.1    Feulner, G.2    Brody, M.S.3    Zhao, S.4    Sadosky, A.B.5
  • 18
    • 0024978041 scopus 로고
    • A stable core region of the tra operon mRNA of plasmid Rl-19
    • KORAIMANN, G., and G. HOGENAUER, 1989 A stable core region of the tra operon mRNA of plasmid Rl-19. Nucleic Acids Res. 17: 1283-1298.
    • (1989) Nucleic Acids Res. , vol.17 , pp. 1283-1298
    • Koraimann, G.1    Hogenauer, G.2
  • 19
    • 0024422961 scopus 로고
    • Nucleotide sequence of the traD region in the Escherichia coli F sex factor
    • JALAJAKUMARI, M. B., and P. A. MANNING, 1989 Nucleotide sequence of the traD region in the Escherichia coli F sex factor. Gene 81: 195-202.
    • (1989) Gene , vol.81 , pp. 195-202
    • Jalajakumari, M.B.1    Manning, P.A.2
  • 21
    • 0025777130 scopus 로고
    • Molecular and evolutionär' relationships among enteric bacteria
    • LAWERENCE, J. G., H. OCHMAN and D. L. HARTL, 1991 Molecular and evolutionär)' relationships among enteric bacteria. J. Gen. Microbiol. 137: 1911-1921.
    • (1991) J. Gen. Microbiol. , vol.137 , pp. 1911-1921
    • Lawerence, J.G.1    Ochman, H.2    Hartl, D.L.3
  • 22
    • 0004469657 scopus 로고
    • Sex in bacteria: Genetic studies, 1945-1952
    • LEDERBERG, J., and E. L. TATUM, 1953 Sex in bacteria: genetic studies, 1945-1952. Science 118: 169-175.
    • (1953) Science , vol.118 , pp. 169-175
    • Lederberg, J.1    Tatum, E.L.2
  • 24
    • 0026708873 scopus 로고
    • Analyzing the mosaic structure of genes
    • MAYNARD SMITH, J., 1992 Analyzing the mosaic structure of genes. J. Mol. Evol. 34: 126-129.
    • (1992) J. Mol. E , vol.34 , pp. 126-129
    • Maynard Smith, J.1
  • 25
    • 0023650558 scopus 로고
    • Fertility inhibition gene of plasmid R100
    • MclNTiRE, S. A., and W. B. DEMPSEY, 1987 Fertility inhibition gene of plasmid R100. Nucleic Acids Res. 15: 2029-2042.
    • (1987) Nucleic Acids Res. , vol.15 , pp. 2029-2042
    • Mclntire, S.A.1    Dempsey, W.B.2
  • 26
    • 0025133386 scopus 로고
    • Molecular evolution of the Escherichia colt chromo'some
    • MILKMAN, R., and M. M. BRIDGES, 1990 Molecular evolution of the Escherichia colt chromo'some. III. Clonal frames. Genetics 126: 505-517.
    • (1990) III. Clonal Frames. Genetics , vol.126 , pp. 505-517
    • Milkman, R.1    Bridges, M.M.2
  • 27
    • 0028354540 scopus 로고
    • Inserüon sequence-related genetic variation in resting Escherichia coli K-12
    • NAAS, T., M. BLOT, W. M. Frrcn and W. ARBER, 1994 Inserüon sequence-related genetic variation in resting Escherichia coli K-12. Genetics 136: 721-730.
    • (1994) Genetics , vol.136 , pp. 721-730
    • Naas, T.1    Blot, M.2    Frrcn, W.M.3    Arber, W.4
  • 28
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymotis nucleotide substitutions
    • NEI, M., and T. GOJOBORI, 1986 Simple methods for estimating the numbers of synonymous and nonsynonymotis nucleotide substitutions. Mol. Biol. Evol. 3: 418-426.
    • (1986) Mol. Biol. E , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 29
    • 0024658495 scopus 로고
    • Variances of the average ntimbers of nucleotide substitutions within and between populations
    • NEI, M., and L. JI.N, 1989 Variances of the average ntimbers of nucleotide substitutions within and between populations. Mol. Biol. Evol. 6: 290-300.
    • (1989) Mol. Biol. E , vol.6 , pp. 290-300
    • Nei, M.1    Ji.n, L.2
  • 30
    • 0026728291 scopus 로고
    • Evolutionary genetics of tfie proline permease gene (putP) and the control region of the proline utilization operon in populations of Salmonella and Escherichia coli.
    • NELSON, K., and R. K. SELANDER, 1992 Evolutionary genetics of tfie proline permease gene (putP) and the control region of the proline utilization operon in populations of Salmonella and Escherichia coli.]. Bacteriol. 174: 6886-6895.
    • (1992) Bacteriol. , vol.174 , pp. 6886-6895
    • Nelson, K.1    Selander, R.K.2
  • 31
    • 0028051326 scopus 로고
    • Intergenic transfer and recombination of the 6-phosphogluconate dehydrogenase gene (gnd) in enteric bacteria
    • NELSON', K., and R. K. SELANDER, 1994 Intergenic transfer and recombination of the 6-phosphogluconate dehydrogenase gene (gnd) in enteric bacteria. Proc. Natl. Acad. Sei. USA 91: 10227-10231.
    • (1994) Proc. Natl. Acad. Sei. USA , vol.91 , pp. 10227-10231
    • Nelson, K.1    Selander, R.K.2
  • 32
    • 0025992890 scopus 로고
    • Nucleotide polymorphism and evolution in the glyceraldehyde-3-phosphate dehydrogenase gene (gapA) in natural populations of Salmonella and Escherichia coli
    • NELSON, K., T. S. WHITTAM and R. K. SELANDER, 1991 Nucleotide polymorphism and evolution in the glyceraldehyde-3-phosphate dehydrogenase gene (gapA) in natural populations of Salmonella and Escherichia coli. Proc. Natl. Acad. Sei. USA 88: 6667-6671.
    • (1991) Proc. Natl. Acad. Sei. USA , vol.88 , pp. 6667-6671
    • Nelson, K.1    Whittam, T.S.2    Selander, R.K.3
  • 33
    • 0021367325 scopus 로고
    • Standard reference strains of Escherichia coli from natural populations
    • OCIIMAN, H., and R. K. SELANDER, 1984 Standard reference strains of Escherichia coli from natural populations. J. Bacteriol. 157: 690-693.
    • (1984) J. Bacteriol. , vol.157 , pp. 690-693
    • Ociiman, H.1    Selander, R.K.2
  • 34
    • 0027495942 scopus 로고
    • Molecular mechanisms of colicin evolution
    • RILEY, M. A., 1993a Molecular mechanisms of colicin evolution. Mol. Biol. Evol. 10: 1380-1395.
    • (1993) Mol. Biol. E , vol.10 , pp. 1380-1395
    • Riley, M.A.1
  • 35
    • 0027324050 scopus 로고
    • Positive selection for colicin diversity in bacteria
    • RILEY, M. A., 1993b Positive selection for colicin diversity in bacteria. Mol. Biol. Evol. 10: 1048-1059.
    • (1993) Mol. Biol. E , vol.10 , pp. 1048-1059
    • Riley, M.A.1
  • 36
    • 0026739833 scopus 로고
    • A survey of Col plasmids in natural isolates of Escherichia coli and an investigation into the stability of Col-plasmid lineages
    • RILEY, M. A., and D. M. GORDON, 1992 A survey of Col plasmids in natural isolates of Escherichia coli and an investigation into the stability of Col-plasmid lineages. J. Gen. Microbiol. 138: 13451352.
    • (1992) J. Gen. Microbiol. , vol.138 , pp. 13451352
    • Riley, M.A.1    Gordon, D.M.2
  • 37
    • 0027973806 scopus 로고
    • Nucleotide polymorphism in colicin El and la plasmids from natural isolates of Escherichia coli
    • RILEY, M. A., Y. TAN and J. WANG, 1994 Nucleotide polymorphism in colicin El and la plasmids from natural isolates of Escherichia coli. Proc. Natl. Acad. Sei. USA 91: 11276-11280.
    • (1994) Proc. Natl. Acad. Sei. USA , vol.91 , pp. 11276-11280
    • Riley, M.A.1    Tan, Y.2    Wang, J.3
  • 38
    • 0024671411 scopus 로고
    • Nucleolide sequence and replication characteristics of RepFIB, a basic replicon of IncF plasmids
    • SAUL, D., A. J. SPIERS, J. MCNULTY, M. G. GIBUS, P. L. BERGQUIST et al., 1989 Nucleolide sequence and replication characteristics of RepFIB, a basic replicon of IncF plasmids. J. Bacteriol. 171: 2697-2707.
    • (1989) J. Bacteriol. , vol.171 , pp. 2697-2707
    • Saul, D.1    Spiers, A.J.2    Mcnulty, J.3    Gibus, M.G.4    Bergquist, P.L.5
  • 39
    • 0023375195 scopus 로고
    • The neighborjoining method: A new method for reconstructing phylogenetic trees
    • SAITOU, N., and M. NEI, 1987 The neighborjoining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
    • (1987) Mol. Biol. E , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 40
    • 0024356449 scopus 로고
    • Statistical tests for detecting gene conversion
    • S.WYER, S., 1989 Statistical tests for detecting gene conversion. Mol. Biol. Evol. 6: 526-538.
    • (1989) Mol. Biol. E , vol.6 , pp. 526-538
    • S.wyer, S.1
  • 41
    • 0023413802 scopus 로고
    • Confidence interval for the number of selectively neutral amino acid polymorphisms
    • SA\VYER, S. A., D. E. DYKIIUIZEN and D. L. HARTI, 1987 Confidence interval for the number of selectively neutral amino acid polymorphisms. Proc. Natl. Acad. Sei. USA 84: 6225-6228.
    • (1987) Proc. Natl. Acad. Sei. USA , vol.84 , pp. 6225-6228
    • Savyer, S.A.1    Dykiiuizen, D.E.2    Harti, D.L.3
  • 43
    • 0023498062 scopus 로고
    • Mechanism and control of homologous recombination in Escherichia coli
    • SMITH, G., 1987 Mechanism and control of homologous recombination in Escherichia coli. Annu. Rev. Genet. 21: 179-201.
    • (1987) Annu. Rev. Genet. , vol.21 , pp. 179-201
    • Smith, G.1
  • 44
    • 0022410317 scopus 로고
    • Statistical methods of DNA sequence analysis: Detection of intragenic recombination or gene conversion
    • STEPHENS, J. C., 1985 Statistical methods of DNA sequence analysis: detection of intragenic recombination or gene conversion. Mol. Biol. Evol. 2: 539-556.
    • (1985) Mol. Biol. E , vol.2 , pp. 539-556
    • Stephens, J.C.1
  • 45
    • 0026509423 scopus 로고
    • Differential levels of fertility inhibition among F-like plasmids are related to the cellular concentration of/nOmRNA
    • VAN BIESEN T., and L. S. FROST, 1992 Differential levels of fertility inhibition among F-like plasmids are related to the cellular concentration of/nOmRNA. Mol. Microbiol. 6: 771-780.
    • (1992) Mol. Microbiol. , vol.6 , pp. 771-780
    • Van Biesen, T.1    Frost, L.S.2
  • 46
    • 0026689684 scopus 로고
    • Enzymes and molecular mechanisms of genetic recombination
    • WEST, S. C., 1992 Enzymes and molecular mechanisms of genetic recombination. Annu. Rev. Biochem. 61: 603-640.
    • (1992) Annu. Rev. Biochem. , vol.61 , pp. 603-640
    • West, S.C.1
  • 47
    • 0001600658 scopus 로고
    • Structure and function of the F factor and mechanism of conjugation, pp. 1110-1133 in
    • edited by F. C. NEIDIIARDT, J. L. INGRAHAM, K. BROOKS Low, B. MACASANIK, M. SCHAECHTER and H. E. UMBARGER. American Society for Microbiology Press, Washington, DC.
    • WILLETTS, N., and R. SKURRAY, 1987 Structure and function of the F factor and mechanism of conjugation, pp. 1110-1133 in Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology, edited by F. C. NEIDIIARDT, J. L. INGRAHAM, K. BROOKS Low, B. MACASANIK, M. SCHAECHTER and H. E. UMBARGER. American Society for Microbiology Press, Washington, DC.
    • (1987) Escherichia Coli and Salmonella Typhimurium: Cellular and Molecular Biology
    • Willetts, N.1    Skurray, R.2


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