Molecular phylogenetics of monarch flycatchers (genus Monarcha) with emphasis on Solomon Island endemics

Molecular Phylogenetics and Evolution

Volumn 37, Issue 3, 2005, Pages 776-788

  Filardi, Christopher E ^a,b   Smith, Catherine E ^a  

^a UNIVERSITY OF WASHINGTON   (United States)

^b DIVISION OF INVERTEBRATE ZOOLOGY   (United States)

Author keywords

Monarch taxanomy; Northern Melanesia; Plumage; Social selection; Superspecies; Tropical Pacific

Indexed keywords

MITOCHONDRIAL DNA; PRIMER DNA;

ANIMAL; ARTICLE; BIOLOGICAL MODEL; COMPARATIVE STUDY; DEMOGRAPHY; DNA SEQUENCE; GENETICS; MELANESIA; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; SONGBIRD; STATISTICAL MODEL;

ANIMALS; BASE SEQUENCE; DEMOGRAPHY; DNA PRIMERS; DNA, MITOCHONDRIAL; LIKELIHOOD FUNCTIONS; MELANESIA; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; PASSERIFORMES; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

CLYTORHYNCHUS; MONARCHA; MONARCHA MANADENSIS; MONARCHA MELANOPSIS; MONARCHA TRIVIRGATUS; NEOLALAGE;

EID: 27744529388     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2005.02.007     Document Type: Article

References (56)

1. A.J. Baker, and D.H. Marshall Mitochondrial control region sequences as tools for understanding evolution D.P. Mindell Avian molecular evolution and systematics 1997 Academic Press San Diego 51 82
2. K.B. Beckman, M.F. Smith, and C. Orrego Purification of mitochondrial DNA with Wizard minipreps DNA purification system Promega Notes Mag. 43 1993 10 13
3. S.M. Birks, and S.V. Edwards. A phylogeny of Megapodes (Aves: Megopodiidae) based on nuclear and mitochondrial DNA sequence Mol. Phylogenet. Evol. 23 2002 408 421
4. N.T. Burley, and R. Symanski "A taste for the Beautiful": latent aesthetic mate preferences for white crests in two species of Australian grassfinches Am. Nat. 152 1998 792 802
5. G.S. Butcher, and S. Rohwer The evolution of conspicuous and distinctive coloration for communication in birds D.M. Power Current ornithology vol. 6 1989 Plenium Press New York 51 108
6. J.F. Clements Birds of the world: A checklist 2000 IBIS Publishing Vista, CA
7. J. Cracraft Deep-history biogeography: retrieving the historical pattern of evolving continental biotas Syst. Zool. 37 1988 221 236
8. J Cracraft Patterns of diversification within continental biotas: hierarchical congruence among the areas of endemism of Australian vertebrates Aust. Syst. Bot. 4 1991 211 227
9. C.W. Cunningham Can three incongruence tests predict when data should be combined? Mol. Biol. Evol. 14 1997 733 740
10. J.M. Diamond Ecological consequences of island colonization by southwest Pacific birds, II. The effect of species diversity on total population density Proc. Natl. Acad. Sci. USA 67 1970 1715 1722
11. J.M. Diamond Avifauna of the Eastern Highlands of New Guinea Publ. Nuttall Ornithol. Club 12 1972 1 438
12. J.M. Diamond Colonization of exploded volcanic islands by birds: the supertramp strategy Science 184 1974 803 806
13. S.V. Drovetski, R.M. Zink, S. Rohwer, I.V. Fadeev, E.V. Nesterov, I. Karagodin, E.A. Koblik, and Y.A. Red'kin Complex biogeographic history of a Holarctic passerine Proc. R. Soc. Lond. Series B 271 2004 545 551
14. J.S. Farris, M. Kallersjo, A.G. Kluge, and C. Bull Testing significance of incongruence Cladistics 10 1994 315 320
15. C.E. Filardi Speciation and the biogeographic history of tropical Pacific flycatchers (genus Monarcha) 2003 Doctoral dissertation University of Washington, Seattle
16. I.C.J. Galbraith, and E.H. Galbraith Land birds of Guadalcanal and the San Cristoval group, eastern Solomon Islands Bull. Br. Mus. Nat. Hist. Zool. 9 1962 1 86
17. S.J. Hackett Molecular phylogenetics and biogeography of tanagers in the genus Ramphocelus (Aves) Mol. Phylogenet. Evol. 5 1996 368 382
18. E. Hartert On the birds of Feni and Nissan Islands, east of South New Ireland Novit. Zool. 33 1926 33 48
19. J.P. Huelsenbeck The robustness of two phylogenetic methods: four-taxon simulations reveal a slight superiority of maximum likelihood over neighbor joining Mol. Biol. Evol. 12 1995 843 849
20. J.P. Huelsenbeck, J.J. Bull, and C.W. Cunningham Combining data in phylogenetic analysis Trends Ecol. Evol. 11 1996 152 158
21. J.P. Huelsenbeck, and K.A. Crandall Phylogeny estimation and hypothesis testing using maximum likelihood Ann. Rev. Ecol. Syst. 28 1997 437 466
22. J.P. Huelsenbeck, and B. Rannala Phylogenetic methods come of age: testing hypotheses in an evolutionary context Science 276 1997 227 232
23. IUCN, 2004. 2004 IUCN red list of threatened species. Downloaded on 27 January, 2005. Available from: 〈www.iucnredlist.org〉
24. G.C. Johns, and J.C. Avise A comparative summary of genetic distances in the vertebrates from the mitochondrial cytochrome b gene Mol. Biol. Evol. 15 1998 1481 1490
25. R.H. MacArthur, and E.O. Wilson The theory of island biogeography 1967 Princeton University Press Princeton, NJ
26. E. Mayr Birds collected during the Whitney South Sea Expedition. 24. Notes on Polynesian flycatchers and revision of the genus Clytorhynchus (Elliot) Am. Mus. Novit. 1933 628
27. E. Mayr Birds collected during the Whitney South Sea Expedition. 25. Notes on the genera Myiagra and Mayrornis Am. Mus. Novit. 1933 651
28. E. Mayr List of new guinea birds: A systematic and faunal list of the birds of new guinea and adjacent islands 1941 Am. Mus. Nat. Hist. New York
29. E. Mayr Systematics and the origin of species 1942 Columbia University Press New York
30. E. Mayr Birds of the southwest Pacific 1945 The MacMillan Company New York
31. E. Mayr Notes on the birds of Northern Melanesia. 3 Passeres. Am. Mus. Novit. 1955 1707
32. E. Mayr Animal species and evolution 1963 Harvard University Press Cambridge, MA
33. E. Mayr, and J. Diamond The birds of northern Melanesia: Speciation, ecology, and biogeography 2001 Oxford University Press New York
34. D.B. McDonald, R.P. Clay, R.T. Brumfield, and M.J. Braun Sexual selection on plumage and behavior in an avian hybrid zone: experimental tests of male-male interactions Evolution 55 2001 1443 1451
35. W.E. Moore Inferring phylogenies from mtDNA variation: mitochondrial-gene trees versus nuclear-gene trees Evolution 49 1995 718 726
36. K.E. Omland, and S.M. Lanyon Reconstructing plumage evolution in orioles (Icterus): repeated convergence and reversal in patterns Evolution 54 2000 2119 2133
37. S.F. Pearson, and S. Rohwer Asymmetries in male aggression across an avian hybrid zone Behav. Ecol. 11 1999 93 101
38. Peters, J.L., 1986. Check-list of Birds of the World, vol. XI. Museum of Comparative Zoology, Cambridge, MA
39. D. Posada, and K.A. Crandall Modeltest: testing the model of DNA substitution Bioinformatics 14 1998 817 818
40. S.D. Ripley Comments on birds from the Western Papuan Islands Postilla 38 1959 1 17
41. S.D. Ripley A systematic and ecological study of birds of New Guinea Bull. Peabody Mus. Nat. Hist. 19 1964 1 85
42. S. Rohwer The evolution of reliable and unreliable badges of fighting ability Am. Zool. 22 1982 531 546
43. M. Ruokonen, and L. Kvist Structure and evolution of the avian mitochondrial Control Region Mol. Phylogenet. Evol. 23 2002 422 423
44. I. SanMartin, H. Enghoff, and F. Ronquist Patterns of animal dispersal, vicariance and diversification in the Holarctic Biol. J. Linn. Soc. 73 2001 345 390
45. M.A. Saunders, and S.V. Edwards Dynamics and phylogenetic implications of mtDNA Control Region sequences in New World jays (Aves: Corvidae) J. Mol. Evol. 51 2000 97 109
46. Schodde, R., 1977. Contribution to Papuasian ornithology. VI. Survey of the birds of southern Bougainville Island, Papua New Guinea. CSIRO Div. Wildlf. Res. Tech. Paper No. 34
47. R. Schodde, and I.J. Mason The directory of Australian birds 1999 CSIRO Publishing Australia
48. Sharpe, R.B., 1879. Catalogue of the birds in the British Museum, vol. 4. Cichlomorphae: Part I. British Museum, London
49. F.H. Sheldon, and D.W. Winkler Intergeneric phylogenetic relationships of swallows estimated by DNA-DNA hybridization The Auk 110 1993 798 824
50. C.G. Sibley, and J.E. Ahlquist Phylogeny and classification of birds: A study in molecular evolution 1990 Yale University Press New Haven and London
51. C.G. Sibley, and B.L. Monroe Jr. Distribution and taxonomy of birds of the world 1990 Yale University Press New Haven and London
52. Smith, C.E., 2003. Phylogeography of multiple avian lineages from the Solomon Islands. Doctoral dissertation, Univ. of Washington, Seattle
53. A.J. Stattersfield, M.J. Crosby, A.J. Long, and D.C. Wege Endemic bird areas of the world: Priorities for biodiversity conservation 1998 BirdLife International Cambridge
54. Swofford, D.L., 2001. PAUP*. Phylogenetic Analysis Using Parsimony (* and Other Methods). Version 4.0. Sinauer Associates, Sunderland, MA
55. M.J. West-Eberhard Sexual selection, social competition and speciation Quart. Rev. Biol. 58 1983 155 183
56. R.M. Zink, R.C. Blackwell-Rago, and F. Ronquist The shifting roles of dispersal and vicariance in biogeography Proc. R. Soc. Lond. B. 267 2000 497 503