Comprehensive analysis of wound-inducible genes from the Nicotiana glutinosa leaves using a full-length cDNA microarray

Journal of the Faculty of Agriculture, Kyushu University

Volumn 50, Issue 2, 2005, Pages 635-648

  Kouzuma, Yoshiaki ^a   Tsutsumi, Yusuke ^a   Abe, Masumi ^a   Hayashi, Takeshi ^a   Hada, Kazumasa ^a   Uehashi, Keigo ^a   Shimada, Yukiko ^a   Tashiro, Kosuke ^a   Kuhara, Satoru ^a   Kimura, Makoto ^a  

^a KYUSHU UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

NICOTIANA GLUTINOSA;

EID: 27744487245     PISSN: 00236152     EISSN: None     Source Type: Journal    
DOI: 10.5109/4677     Document Type: Article

References (30)

1. Asai, T., Tena, G., Plotnilkova, J., Willman, M. R., Chlu, W. L. Gomez-Gomez, L., Boller, T., Ausubel, FM. and Sheen, J. 2002 MAP kinase signaling cascade in Arabidopsis innate immunity. Nature 415: 977-983
2. Cleveland, W. S. 1979 Robust locally weighted regression and smoothing expression measures and reproducibility in microarray assays. J. Amer. Stat, Assoc., 74: 829-836
3. Coca, M. A., Almoguera, C., Thomas, T. L., and Jordano, J. 1996 Differential regulation of small heat-shock genes in plants: analysis of a water-stress-inducible and developmentally activated sunflower promoter. Plant. Mol. Biol. 31: 863-876
4. De Bruxelles, G. L. and Roberts, M. R. 2001 Signals regulating multiple responses to wounding and herbivores. Crit. Rev. Plant Sci., 20: 487-521
5. DeRocher, AE. and Vierling, E. 1995 Cytoplasmic, HSP70 homologues of pea; differential expression in vegetable and embryonic organs., Plant Mol. Biol., 27: 441-456
6. Dubouzet, JG., Sakuma, Y., Ito, Y., Kasuga, M., Dubouzet, EG., Miura, S., Seki, K. and Yamaguchi-Shinozaki, K. 2003 OsDREB genes in rice, Oryza sativa L, encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression. Plant J., 33: 751-763
7. Eisen, M. B., Spellman, P. T., Brown, P. O., and Botstein, D. 1998 Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. USA, 95: 14863-14868
8. Fowler, S. and Thomashow, M. F. 2002 Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway. Plant Cell, 14: 1675-1690
9. Gong, Z., Koiwa, H., Cushman, M. A., Ray, A., Bufford, D., Kore-eda, S., Matsumoto, T. K., Zhu, J., Cushman, J. C., Bressan, R. A., and Hasegawa, P. M. 2001 Genes that are uniquely stress regulatory in salt overly sensitive (sos) mutants. Plant Physiol., 126: 365-75
10. Graham, J. S., Hall, G., Pearce, G., and Ryan, C. A. 1986 Regulation of synthesis of proteinase inhibitors I and II mRNAs in leaves of wounded tomato plants. Planta, 169: 399-405
11. Gyorgyey, J., Gartner, A., Nemeth, K., Magyar, Z., Hirt, H., Heberle-Bors, E., and Dudits, D. 1991 Alfalfa heat shock genes are differentially expressed during somatic embryogenesis. Plant. Mol. Biol. 16: 999-1007
12. Hailling, J., Yidong, L., Kwang, Y. Y., Chana, Y. K., Barbara, B., and Shuqun, Z. 2003 Function of mitogen-activated protein kinase pathway in N gene-mediated resistance in tobacco. Plant J. 33: 719-731
13. Jameson, P. E. and Clarke, S. F. 2002 Hormone-virus interactions in plants. Crit. Rev. Plant Sci., 21: 205-228
14. Julich, A. 1995 Implementations of BLAST for parallel computers., Comput. Appl. Biosci., 11: 3-6
15. LaFayette, P. R., Nagao, R. T., O'Grady, K., Vierling, E., and Key J. L. 1996 Molecular characterization of cDNAs encoding low-molecular-weight heat shock proteins of soybean. Plant Mol. Biol., 30: 159-169
16. Laurence, S. D., Cline, K., and Moore, G. A. 1997 Chromoplast development in ripening tomato fruit; identification of cDNA for chromoplast-targeted proteins and characterization of a cDNA encoding a plastid-localized low-molecular-weight heat shock protein. Plant Mol. Biol., 33: 483-492
17. Oztur, ZN., Talama, V., Deyholos, M., Michalowski, CB., Galbraith, DW., Gozukirmizi, N., Tuberosa, R., and Bohnert, HJ. 2002 Monitoring large-scale changes in transcript abundance in drought- and salt-stressed barley. Plant Mol. Biol., 48: 551-573
18. Reymond, P. and Farmer, E. E. 1998 Jasmonate and salicylate as global signals for defense gene expression. Curr. Opin. Plant Biol., 1: 404-411
19. Ryan, C. A. 1990 Protease inhibitors in plants: Genes for improving defenses against insects and pathogens. Annu. Rev. Phytopathol., 28: 245-249
20. Sabehat, A., Lurie, S., and Weiss, D. 1998 Expression of smallheat-shock proteins at low temperatures. Plant Physiol. 117: 651-658
21. Seki, M., Narusaka, M., Ishida, J., Nanjo, T., Fujita, M., Oono, Y., Kamiya, A. Nakajima, M., Enju, A., Sakurai, T., Satou, M., Akiyama, K., Taji. T., Yamaguchi-Shinozaki, K., Carninci, P., Kawai, J., Hayashizaki, Y., and Shinozaki, K. 2002 Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray. Plant J., 3: 279-292
22. Seki, M., Narusaka, M., Abe, H., Kasuga, M., Yamaguchi-Shinozaki, K., Carninci, P., Hayashizaki, Y., and Shinozaki, K. 2001 Monitoring the expression pattern of 1300 Arabidopsis genes under drought and cold stresses by using a full-length cDNA microarray. Plant Cell, 13: 61-72
23. Shirzadegan, M., Christie, P., and Seemann, J. R. 1991 An efficient method for isolation for RNA from tissue cultured plant cells. Nucleic Acids Res., 11: 6055
24. Suzuki, Y. and Sugano, S. 2001 Construction of full-length-cDNA libraries. The oligo-capping method. Methods Mol. Biol., 175: 143-153
25. The Arabidopsis Genome Initiative, 2000 Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature, 408: 796-815
26. Wagner, U., Edwards, R., Dixon, D. P., and Mauch, F. 2002 Probing the diversity of the Arabidopsis glutathione S-transferase gene family. Plant Mol. Biol. 49: 515-532
27. Wehmeyer, N., Hernandez, L. D., Finhelstein, R. R., and Vierlig, E. 1996 Synthesis of small heat-shock proteins in part of the developmental program of late seed maturation. Plant Physiol., 112: 747-757
28. Whitham, S., Dinesh-Kumar, S. P., Choi, D., Hehl, R., Corr, C., and Baker, B. 1994 The product of the tobacco mosaic virus resistance gene N: similarity to toll and the interleukin-1 receptor. Cell, 78: 1101-1115
29. Yoshimura, K., Yabuta, Y., Ishikawa, T., and Shigeoka, S. 2000 Expression of spinach ascorbate peroxidase isoenzymes in response to oxidative stresses. Plant Physiol. 123: 223-234
30. Zinselmeier, C., Sun, Y., Helentjaris, T., Beatty, M., Yang, S., Smith, H., and Habben, J. 2002 The use of gene expression profiling to dissect the stress sensitivity of reproductive developmental in maize. Field Crop Res., 75: 111-121