Nonsynonymous site heteroplasmy in fish mitochondrial DNA

Genes and Genetic Systems

Volumn 80, Issue 4, 2005, Pages 297-301

  Shigenobu, Yuya ^a   Saitoh, Kenji ^b   Hayashizaki, Ken Ichi ^a   Ida, Hitoshi ^a  

^a KITASATO UNIVERSITY   (Japan)

^b FISHERIES RESEARCH AGENCY   (Japan)

Author keywords

Codon position; Nucleotide substitution; Oncorhynchus keta; Paralichthys olivaceus; Wild animal

Indexed keywords

MITOCHONDRIAL DNA;

ARTICLE; CODON; CONTROLLED STUDY; FISH; GENE MUTATION; GENE SEQUENCE; GENETIC POLYMORPHISM; HETEROPLASMY; MITOCHONDRION; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; SALMON;

AMINO ACID SUBSTITUTION; ANIMALS; BASE SEQUENCE; CODON; DNA, MITOCHONDRIAL; FLATFISHES; MOLECULAR SEQUENCE DATA; NADH DEHYDROGENASE; ONCORHYNCHUS KETA; POLYMORPHISM, SINGLE NUCLEOTIDE;

ANIMALIA; ONCORHYNCHUS KETA; PARALICHTHYS OLIVACEUS;

EID: 27744436377     PISSN: 13417568     EISSN: 13417568     Source Type: Journal    
DOI: 10.1266/ggs.80.297     Document Type: Article

References (30)

1. Asahida, T., Kobayashi, T., Saitoh, K., and Nakayama, I. (1996) Tissue preservation and total DNA extraction from fish stored at ambient temperature using buffers containing high concentration of Urea. Fish. Sci. 62, 727-730.
2. DiMauro, S., and Schon, E. A. (2001) Mitochondrial DNA mutations in human disease. Am. J. Med. Genet. 106, 18-26.
3. Doiron, S., Bernatchez, L., and Blier, P. U. (2002) A comparative mitogenomic analysis of the potential adaptive value of arctic charr mtDNA introgression in brook charr populations (Salvelinus fontinalis Mitcnill). Mol. Biol. Evol. 19, 1902-1909.
4. Fujii, T., and Nishida, M. (1997) High sequence variability in the mitochondrial DNA control region of the Japanese flounder Paralichthys olivaceus. Fish. Sci. 63, 906-910.
5. Garcia, B. A., Manfredi, C., Fichera, L., and Segura, E. L. (2003) Variation in mitochondrial 12S and 16S ribosomal DNA sequences in natural populations of Triatoma infestans (Hemiptera: Reduviidae). Am. J. Trop. Med. Hyg. 68, 692-694.
6. Gyllensten, U., Wharton, D., Josefsonn, A., and Wilson, A. C. (1991) Paternal inheritance of mitochondrial DNA in mice. Nature 352, 255-257.
7. Hawswirth, W. W., and Laipis, P. J. (1982) Mitochondrial DNA polymorphism in a maternal lineage of Holstein cows. Proc. Natl. Acad. Sci. USA 79, 4686-4649.
8. Hurst, C. D., Bartlett, S. E., Davidson, W. S., and Bruce, I. J. (1999) The complete mitochondrial DNA sequence of the Atlantic salmon, Salmo salar. Gene 239, 237-242.
9. Kaneda, H., Hayashi, J., Takahama, S., Taya, C., Lindahl, K. F., and Yonekawa, H. (1995) Elimination of paternal mitochondrial DNA in intraspecific crosses during early mouse embryogenesis. Proc. Natl. Acad. Sci. USA 92, 4542-4546.
10. Kawaguchi, A., Miya, M., and Nishida, M. (2001) Complete mitochondrial DNA sequence of Aulopus japonicus (Teleostei: Aulopiformes), a basal Eurypterygii: longer DNA sequences and higher-level relationships. Ichthyol. Res. 48, 213-223.
11. Kondo, R., Satta, Y., Matsuura, E. T., Ishiwa, H., Takahata, N., and Chigusa, S. I. (1990) Incomplete maternal transmission of mitochondrial DNA in Drosophila. Genetics 126, 657-663.
12. Kvist, L., Martens, J., Nazarenko, A. A., and Orell, M. (2003) Paternal leakage of mitochondrial DNA in the great tit (Parus major). Mol. Biol. Evol. 20, 243-247.
13. Li, W. -H., Wu, C. -I., and Luo, C. -C. (1985) A new method for estimating synonymous and nonsynonymous rate of nucleotide substitution considering the relative likelihood of nucleotide and codon changes. Mol. Biol. Evol. 2, 150-174.
14. Magoulas, A., and Zouros, E. (1993) Restriction-site heteroplasmy in Anchovy (Engraulis encrasicolus) indicates incidental biparental inheritance of mitochondrial DNA. Mol. Biol. Evol. 10, 319-325.
15. Miya, M., and Nishida, M. (2000) Use of mitogenomic information in teleostean molecular phylogenetics: a tree-based exploration under the maximum-parsimony optimality criterion. Mol. Phylogenet. Evol. 17, 437-455
16. Miya, M., Kawaguchi, A., and Nishida, M. (2001) Mitogenomic exploration of higher teleostean phylogenies: a case study for moderate-scale evolutionary genomics with 38 newly determined complete mitochondrial DNA sequences. Mol. Biol. Evol. 18, 1993-2009.
17. Miya, M., Takeshima, H., Endo, H., Ishiguro, N. B., Inoue, J. G., Mukai, T., Satoh, T. P., Yamaguchi, M., Kawaguchi, A., Mabuchi, K., Shirai, S. M., and Nishida, M. (2003) Major patterns of higher teleostean phylogenies: a new perspective based on 100 complete mitochondrial DNA sequences. Mol. Phylogenet. Evol. 26, 121-138.
18. Moum, T., and Bakke, I. (2001) Mitochondrial control region structure and single site heteroplasmy in the razorbill (Alca torda; Aves). Curr. Genet. 39, 198-203.
19. Mroczek-Tonska, K., Ratajska, D., Guillot, C., Sasiadek, M., Ambroziak, A., Lubos, L., and Bartnik, E., (2002) Heteroplasmy analysis in the Polish patients with 11778A mutation responsible for Leber hereditary optic neuropathy. Acta. Biochim. Pol. 49, 257-262.
20. Pesole, G., Gissi, C., Chirico, A, D., and Saccone, C. (1999) Nucleotide substitution rate of mammalian mitochondrial genomes. J. Mol. Evol. 48, 427-434.
21. Petri, B., von Haeseler, A., and Pääbo, S. (1996) Extreme sequence heteroplasmy in bat mitochondrial DNA. Biol. Chem. 377, 661-667.
22. Saitoh, K., Hayashizaki, K., Yokoyama, Y., Asahida, T., Toyohara, H., and Yamashita, Y. (2000) Complete nucleotide sequence of Japanese flounder (Paralichthys olivaceus) mitochondrial genome: structural properties and cue for resolving teleostean relationship. J. Hered. 91, 271-278.
23. Sato, S., Ando, J., Ando, H., Urawa, S., Urano, A., and Abe, S. (2001) Genetic variation among Japanese populations of chum salmon inferred from the nucleotide sequences of the mitochondrial DNA control region. Zool. Sci. 18, 99-106.
24. Sato, S., Kojima, H., Ando, J., Ando, H., Wilmot, R. L., Seeb, L. W., Efremov, V., LeClair, L., Buchholz, W., Jin, D. -H., Urawa, S., Kaeriyama, M., Urano, A., and Abe, S. (2004) Genetic population structure of chum salmon in the Pacific Rim inferred from mitochondrial DNA sequence variation. Environ. Biol. Fishes 69, 37-50.
25. Sekino, M., Hara, M., and Taniguchi, N. (2002) Loss of microsatellite and mitochondrial DNA variation in hatchery strains of Japanese flounder Paralichthys olivaceus. Aquaculture 213, 101-122.
26. Shitara, H., Hayashi, J. -I., Takahama, S., Kaneda, H., and Yonekawa, H. (1998) Maternal inheritance of mouse mtDNA in interspecific hybrids: segregation of the leaked paternal mtDNA followed by the prevention of subsequent paternal leakage. Genetics 148, 851-857.
27. Stewart, D. T., Saavedra, C., Stanwood, R. R., Ball, A. O., and Zouros, E. (1995) Male and female mitochondrial DNA lineages in the blue mussel (Mytilus edulis) species group. Mol. Biol. Evol. 12, 735-747.
28. Wilhelm, V., Villegas, J., Miquel, A., Engel, E., Bernales, S., Valenzuela, P. D. T., and Burzio, L. O. (2003) The complete sequence of the mitochondrial genome of the Chinook salmon, Oncorhynchus tshawytscha. Biol. Res. 36, 223-231.
29. Zardoya, R., Garrido-Pertierra, A., and Bautista, J. M. (1995) The complete nucleotide sequence of the mitochondrial DNA genome of the rainbow trout, Oncorhynchus my kiss. J. Mol. Evol. 41, 942-951.
30. Zouros, E., Freeman, K. R., Ball, A. O., and Pogson, G. H. (1992) Direct evidence for extensive paternal mitochondrial DNA inheritance in the marine mussel Mytilus. Nature 359, 412-414.