The complete sequence of the mitochondrial genome of the Chinook salmon, Oncorhyncus tshawytscha

Biological Research

Volumn 36, Issue 2, 2003, Pages 223-231

  Wilhelm, Vivian ^a,b   Villegas, Jaime ^a,b   Miquel, Álvaro ^c   Engel, Esteban ^a,b   Bernales, Sebastián ^a,b   Valenzuela, Pablo D T ^a,b   Burzio, Luis O ^a,b,c  

^a Fundacion Ciencia para la Vida   (Chile)

^b UNIVERSIDAD ANDRÉS BELLO   (Chile)

^c Bios Chile IGSA   (Chile)

Author keywords

16S rRNA; Genome; Mitochondria; Peptides; Salmonids

Indexed keywords

MITOCHONDRIAL DNA; RNA 16S; TRANSFER RNA;

AMINO ACID SEQUENCE; ARTICLE; ATLANTIC SALMON; CONTROLLED STUDY; GENE REPLICATION; GENE SEQUENCE; MITOCHONDRIAL GENETICS; NONHUMAN; NUCLEOTIDE SEQUENCE; ONCORHYNCHUS TSHAWYTSCHA; PROTEIN ANALYSIS; RAINBOW TROUT; SALMONID; SEQUENCE HOMOLOGY; STRAIN DIFFERENCE;

ANIMALS; DNA, MITOCHONDRIAL; GENETIC CODE; GENOME; MOLECULAR SEQUENCE DATA; ONCORHYNCHUS; POLYMERASE CHAIN REACTION; RNA, RIBOSOMAL; RNA, RIBOSOMAL, 16S; RNA, TRANSFER; SEQUENCE ANALYSIS, DNA; SEQUENCE ANALYSIS, PROTEIN;

COREGONUS; COREGONUS LAVARETUS; FONTINALIS; ONCORHYNCHUS MYKISS; ONCORHYNCHUS TSHAWYTSCHA; SALMO; SALMO SALAR; SALMONIDAE; SALVELINUS; SALVELINUS ALPINUS SALVELINUS; SALVELINUS FONTINALIS; VERTEBRATA;

EID: 0141605959     PISSN: 07169760     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (30)

1. AGUAYO J, MIQUEL A, ARANKI N, JAMETT A, VALENZUELA PDT, BURZIO LO (2002) Detection of Piscirickettsia salmonis in fish tissues by an enzyme-linked immunosorbent assay using specific monoclonal antibodies. Dis Aquat Org 49: 33-38
2. ALTSCHUL SF, MADDEN TL, SCHAFFER AA, ZHANG J, ZHANG Z, MILLER W, LIPMAN DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402
3. ANDERSON S, BANKIER AT, BARRELL BG, DE BRUIJN MH, COULSON AR, DROUIN J, EPERON IC, NIERLICH DP, ROE BA, SANGER F, SCHREIER PH, SMITH AJ, STADEN R, YOUNG IG (1981) Sequence and organization of the human mitochondrial genome. Nature 290: 457-465
4. CLAYTON DA (1992) Transcription and replication of animal mitochondrial DNAs. Int. Rev. Cytol. 141: 217-232
5. DIGBY TJ, GRAY MW, LAZIER CB (1992) Rainbow trout mitochondrial DNA: sequence and structural characteristics of the non-coding control region and flanking tRNA genes. Gene 118, 197-204
6. DOIRON S, BLIER PU, BERNATCHEZ L (1999) NCBI Access No AF154851
7. DOIRON S, BLIER PU, BERNATCHEZ L (2002) NCBI Access No NC0860
8. FRYER JL, MAUEL MJ (1997) The Rickettsia: an emerging group of pathogens in fish. Emerg. Infect. Dis. 3: 137-144
9. HIXSON JE, WONG TW, CLAYTON DA (1986) Both the conserved stem-loop and divergent 5′-flanking sequences are required for initiation at the human mitochondrial origin of light-strand DNA replication. J Biol Chem 261: 2384-2390
10. HURST CD, BARTLETT SE, DAVIDSON WS, BRUCE IJ, (1999) The complete nucleotide sequence of the mitochondrial DNA of the Atlantic salmon, Salmo salar. Gene 239: 237-242
11. JAMETT A, AGUAYO J, MIQUEL A, MULLER I, ARRIAGADA R, BECKER MI, VALENZUELA PDT, BURZIO LO (2001) Characterization of monoclonal antibodies against Piscirickettsia salmonis. J Fish Dis 24: 205-215
12. KOBAYASHI S, AMIKURA R, MUKAI M (1998) Localization of mitochondrial large ribosomal RNA in germ plasm of Xenopus embryos. Current Biol 8: 1117-1120
13. LANNAN CN, WINTON JR, FRYER JL (1984) Fish cell lines: establishment and characterization of nine cell lines from salmonids. In Vitro 20:671-676
14. MIGNOTTE B, BARAT M, MOUNOLOU JC (1985) Characterization of a mitochondrial protein binding to single-stranded DNA. Nucleic Acids Res 13: 1703-1716
15. MIYA M, NISHIDA M (2000) Use of Mitogenomic Information in Teleostean Molecular Phylogenetics: A Tree-Based Exploration under the Maximum-Parsimony Optimality Criterion. Mol Phylogenet Evol 17: 437-455
16. NIIKURA T, HASHIMOTO Y, TAJIMA H, NISHIMOTO I. (2002) Death and survival of neuronal cells exposed to Alzheimer's insults. J Neurosci Res 70: 380-391
17. OJALA D, MONTOYA J, ATTARDI G (1981) tRNA punctuation model of RNA processing in human mitochondria. Nature 290: 470-474
18. PHILLIPS RB, OAKLEY TH (1997) Phylogenetic relationships among the Salmonidae based on nuclear DNA and mitochondrial DNA sequences. In: KOCHER T, STEPIEN C (eds) Molecular Systematics of Fishes. San Diego: Academic Press. pp: 145-162
19. ROE BA, MA DP, WILSON RK, WONG IF (1985) The complete nucleotide sequence of the Xenopus laevis mitochondrial genome. J Biol Chem 260: 9759-9774
20. SAMBROOK J, FRITSCH E, MANIATIS T (1989) Molecular Cloning, A Laboratory Manual. 2nd ed, New York: Cold Spring Harbor Laboratory Press
21. SHADEL GS, CLAYTON DA (1997) Mitochondrial DNA maintenance in vertebrates. Ann Rev Biochem 66: 409-435
22. STOVER CK, PHAM XQ, ERWIN AL, MIZOGUCHI SD, WARRENER P, HICKEY MJ, BRINKMAN FS, HUFNAGLE WO, KOWALIK DJ, LAGROU M, GARBER RL, GOLTRY L, TOLENTINO E, WESTBROCK-WADMAN S, YUAN Y, BRODY LL, COULTER SN, FOLGER KR, KAS A, LARBIG K, LIM R, SMITH K, SPENCER D, WONG GK, WU Z, PAULSEN IT, REIZER J, SAIER MH, HANCOCK RE, LORY S, OLSON MV (2000) Complete genome sequence of Pseudomonas aeruginosa PA01, an opportunistic pathogen. Nature 406: 959-964
23. SULIJOADIKUSUMO I, HORIKOSHI N, USHEVA A (2001) Another function for the mitochondrial ribosomal RNA: protein folding. Biochem 40: 11559-11564
24. TAANMAN JW (1999) The mitochondrial genome: structure, transcription, translation and replication. Biochim Biophys Acta 1410: 103-123
25. VALENZUELA PDT, BURZIO LO, ROSEMBLATT M, YUDELEVICH A, BERNALES, S, ENGEL E, ERAZO E, HERNÁNDEZ C, HUARACAN B, ARAYA P, MARTÍNEZ R, MIQUEL A, MORALES C, SOZA C, VILLEGAS J, WILHELM V (2001) Sequence and applications of the Piscirickettsia salmonis genome. Biol Res 34: R17
26. VILLEGAS J, ZARRAGA AM, MULLER I, MONTECINOS L, WERNER E, BRITO M, MENESES AM, BURZIO LO (2000)A novel chimeric mitochondrial RNA localized in the nucleus of mouse sperm. DNA Cell Biol 19: 579-588
27. VILLEGAS J, ARAYA P, BUSTOS-OBREGON E, BURZIO LO (2002) Localization of the 16S mitochondrial rRNA in the nucleus of mammalian spermatogenic cells. Mol Hum Reprod 8: 977-983
28. WALBERG MW, CLAYTON DA (1981) Sequence and properties of the human KB cell and mouse L cell D-loop regions of mitochondrial DNA. Nucleic Acids Res 9: 5411-5421
29. WOLSTENHOLME DR (1992) Animal mitochondrial DNA: structure and evolution. Int Rev Cytol 141:173-216
30. ZARDOYA R, GARRIDO-PERTIERRA A, BAUTISTA JM (1995) The complete nucleotide sequence of the mitochondrial DNA genome of the rainbow trout, Oncorhynchus mykiss. J Mol Evol 41: 942-951