-
1
-
-
0034958341
-
Blue gene: A vision for protein science using a petaflop supercomputer
-
F. Allen et al. Blue Gene: a vision for protein science using a petaflop supercomputer. IBM Systems Journal, 40(2):310-327, 2001. http://www.research. ibm. com/journal/sj/402/allen.pdf.
-
(2001)
IBM Systems Journal
, vol.40
, Issue.2
, pp. 310-327
-
-
Allen, F.1
-
3
-
-
21044456455
-
Design and implementation of message-passing services for the blue gene/L supercomputer
-
G. Almasi et al. Design and implementation of message-passing services for the Blue Gene/L supercomputer. IBM Journal of Research and Development, 49(2/3):393-406, 2005. http://www.research.ibm. com/journal/rd/492/almasi.pdf.
-
(2005)
IBM Journal of Research and Development
, vol.49
, Issue.2-3
, pp. 393-406
-
-
Almasi, G.1
-
4
-
-
0000476256
-
Computer simulation study of the mean forces between ferrous and ferric ions in water
-
J. Bader and D. Chandler. Computer simulation study of the mean forces between ferrous and ferric ions in water. The Journal of Physical Chemistry, 96(15), 1992.
-
(1992)
The Journal of Physical Chemistry
, vol.96
, Issue.15
-
-
Bader, J.1
Chandler, D.2
-
5
-
-
21044454029
-
Design and exploitation of a high-performance SIMD floating-point unit for blue gene/L
-
S. Chatterjee et al. Design and exploitation of a high-performance SIMD floating-point unit for Blue Gene/L. IBM Journal of Research and Development, 49(2/3):377-392, 2005. http://www.research.ibm. com/journal/rd/492/chatterjee. pdf.
-
(2005)
IBM Journal of Research and Development
, vol.49
, Issue.2-3
, pp. 377-392
-
-
Chatterjee, S.1
-
6
-
-
22244433235
-
How to mesh up ewald sums. i. a theoretical and numerical comparison of various particle mesh routines
-
M. Deserno and C. Hohn. How to mesh up ewald sums. i. a theoretical and numerical comparison of various particle mesh routines. J. Chem. Phys., 109(18):7678-7693, 1998.
-
(1998)
J. Chem. Phys.
, vol.109
, Issue.18
, pp. 7678-7693
-
-
Deserno, M.1
Hohn, C.2
-
7
-
-
19344378421
-
Scalable framework for 3d FFTs on the blue gene/L supercomputer Implementation and early performance measurements
-
M. Eleftheriou, B. Fitch, A. Rayshubskiy, T. Ward, and R. Germain. Scalable framework for 3d FFTs on the Blue Gene/L supercomputer Implementation and early performance measurements. IBM Journal of Research and Development, 49(2/3):457-464, 2005. http://www.research.ibm.ccm/journal/rd/ 492/eleftheriou.pdf.
-
(2005)
IBM Journal of Research and Development
, vol.49
, Issue.2-3
, pp. 457-464
-
-
Eleftheriou, M.1
Fitch, B.2
Rayshubskiy, A.3
Ward, T.4
Germain, R.5
-
8
-
-
21044444273
-
Custom math functions for molecular dynamics
-
R. Enenkel et al. Custom math functions for molecular dynamics. IBM Journal of Research and Development, 49(2/3):465-474, 2005. http://www.research. ibm. com/journal/rd/492/enenkel.pdf.
-
(2005)
IBM Journal of Research and Development
, vol.49
, Issue.2-3
, pp. 465-474
-
-
Enenkel, R.1
-
9
-
-
0142010565
-
Blue matter, an application framework for molecular simulation on blue gene
-
B. Fitch, R. Germain, M. Mendell, J. Pitera, M. Pitman, A. Rayshubskiy, Y. Sham, F. Suits, W. Swope, T. Ward, Y. Zhestkov, and R. Zhou. Blue Matter, an application framework for molecular simulation on Blue Gene. Journal of Parallel and Distributed Computing, 63:759-773, 2003.
-
(2003)
Journal of Parallel and Distributed Computing
, vol.63
, pp. 759-773
-
-
Fitch, B.1
Germain, R.2
Mendell, M.3
Pitera, J.4
Pitman, M.5
Rayshubskiy, A.6
Sham, Y.7
Suits, F.8
Swope, W.9
Ward, T.10
Zhestkov, Y.11
Zhou, R.12
-
10
-
-
21044437801
-
Overview of the blue gene/L system architecture
-
A. Gara et al. Overview of the Blue Gene/L system architecture. IBM Journal of Research and Development, 49(2/3):195-212, 2005. http://www.research. ibm. com/journal/rd/492/gara.pdf.
-
(2005)
IBM Journal of Research and Development
, vol.49
, Issue.2-3
, pp. 195-212
-
-
Gara, A.1
-
11
-
-
21044435018
-
Blue gene/L advanced diagnostics environment
-
M. Giampapa et al. Blue Gene/L advanced diagnostics environment. IBM Journal of Research and Development, 49(2/3):319-332, 2005. http://www.research. ibm. com/journal/rd/492/giampapa.pdf.
-
(2005)
IBM Journal of Research and Development
, vol.49
, Issue.2-3
, pp. 319-332
-
-
Giampapa, M.1
-
12
-
-
0036725277
-
Molecular dynamics simulations of biomolecules
-
September
-
M. Karplus and J. McCammon. Molecular dynamics simulations of biomolecules. Nature Structural Biology, 9(9):646-652, September 2002.
-
(2002)
Nature Structural Biology
, vol.9
, Issue.9
, pp. 646-652
-
-
Karplus, M.1
McCammon, J.2
-
13
-
-
19344369109
-
Vectorization techniques for the blue gene/L double FPU
-
J. Lorenz, S. Kral, F. Franchetti, and C. Ueberhuber. Vectorization techniques for the Blue Gene/L double FPU. IBM Journal of Research and Development, 49(2/3):437-446, 2005. http://www.research.ibm. com/journal/rd/492/lorenz.pdf.
-
(2005)
IBM Journal of Research and Development
, vol.49
, Issue.2-3
, pp. 437-446
-
-
Lorenz, J.1
Kral, S.2
Franchetti, F.3
Ueberhuber, C.4
-
14
-
-
21044455436
-
Blue gene/L programming and operating environment
-
J. Moreira et al. Blue Gene/L programming and operating environment. IBM Journal of Research and Development, 49(2/3):367-376, 2005. http://www.research. ibm. com/journal/rd/492/moreira.pdf.
-
(2005)
IBM Journal of Research and Development
, vol.49
, Issue.2-3
, pp. 367-376
-
-
Moreira, J.1
-
15
-
-
0031574512
-
Achieving scalable parallel molecular dynamics using dynamic spatial decomposition techniques
-
December
-
L. Nyland, J. Prins, R. Yun, J. Hermans, H.-C. Kum, and L. Wang. Achieving scalable parallel molecular dynamics using dynamic spatial decomposition techniques. Journal of Parallel and Distributed Computing, 47(2):125-138, December 1997.
-
(1997)
Journal of Parallel and Distributed Computing
, vol.47
, Issue.2
, pp. 125-138
-
-
Nyland, L.1
Prins, J.2
Yun, R.3
Hermans, J.4
Kum, H.-C.5
Wang, L.6
-
16
-
-
16844365398
-
Role of cholesterol and polyunsaturated chains in lipid-protein interactions: Molecular dynamics simulation of rhodopsin in a realistic membrane environment
-
M. C. Pitman, A. Grossfield, F. Suits, and S. E. Feller. Role of cholesterol and polyunsaturated chains in lipid-protein interactions: Molecular dynamics simulation of rhodopsin in a realistic membrane environment. Journal of the American Chemical Society, 127(13):4576-4577, 2005. http://dx.doi.org/10. 1021/ja042715y.
-
(2005)
Journal of the American Chemical Society
, vol.127
, Issue.13
, pp. 4576-4577
-
-
Pitman, M.C.1
Grossfield, A.2
Suits, F.3
Feller, S.E.4
-
17
-
-
0000042162
-
A new parallel method for molecular dynamics simulation of macromolecular systems
-
S. Plimpton and B. Hendrickson. A new parallel method for molecular dynamics simulation of macromolecular systems. Journal of Computational Chemistry, 17(3):326-337, 1996.
-
(1996)
Journal of Computational Chemistry
, vol.17
, Issue.3
, pp. 326-337
-
-
Plimpton, S.1
Hendrickson, B.2
-
18
-
-
19344362622
-
IBM powerPC 440 FPU with complex-arithmetic extensions
-
C. Wait. IBM PowerPC 440 FPU with complex-arithmetic extensions. IBM Journal of Research and Development, 49(2/3):249-254, 2005. http://www.research. ibm. com/journal/rd/492/wait.pdf.
-
(2005)
IBM Journal of Research and Development
, vol.49
, Issue.2-3
, pp. 249-254
-
-
Wait, C.1
|