Distinctions in the specificity of E2F function revealed by gene expression signatures

Proceedings of the National Academy of Sciences of the United States of America

Volumn 102, Issue 44, 2005, Pages 15948-15953

  Black, Esther P ^a,b   Hallstrom, Timothy ^a   Dressman, Holly K ^a   West, Mike ^a   Nevins, Joseph R ^a  

^a DUKE UNIVERSITY   (United States)

^b UNIVERSITY OF KENTUCKY   (United States)

Author keywords

DNA microarray; Transcriptional control

Indexed keywords

DNA; TRANSCRIPTION FACTOR E2F; TRANSCRIPTION FACTOR E2F1; TRANSCRIPTION FACTOR E2F3;

ANIMAL CELL; APOPTOSIS; ARTICLE; BIOCHEMISTRY; CELL CYCLE; CELL FATE; CELL PROLIFERATION; CHIMERA; CONTROLLED STUDY; DNA MICROARRAY; DNA REPLICATION; EMBRYO; GENE ACTIVATION; GENE EXPRESSION REGULATION; MITOSIS; MOUSE; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN INTERACTION; TRANSCRIPTION REGULATION;

ANIMALS; APOPTOSIS; CELL CYCLE; CELL PROLIFERATION; CELLS, CULTURED; DNA REPLICATION; E2F TRANSCRIPTION FACTORS; E2F1 TRANSCRIPTION FACTOR; E2F2 TRANSCRIPTION FACTOR; E2F3 TRANSCRIPTION FACTOR; EMBRYO; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; MICE; MITOSIS;

ANIMALIA;

EID: 27644583723     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0504300102     Document Type: Article

References (44)

1. Nevins, J. R. (1998) Cell Growth Differ. 9, 585-593.
2. Dyson, N. (1998) Genes Dev. 12, 2245-2262.
3. Ishida, S., Huang, E., Zuzan, H., Spang, R., Leone, G., West, M. & Nevins, J. R. (2001) Mol. Cell. Biol. 21, 4684-4699.
4. Polager, S., Kalma, Y., Berkovich, E. & Ginsberg, D. (2002) Oncogene 21, 437-446.
5. Ren, B., Cam, H., Takahashi, Y., Volkert, T., Terragni, J., Young, R. A. & Dynlacht, B. D. (2002) Genes Dev. 16, 245-256.
6. Zhu, W., Giangrande, P. & Nevins, J. R. (2004) EMBO J. 23, 4615-4626.
7. Cam, H. & Dynlacht, B. D. (2003) Cancer Cell 3, 311-316.
8. Di Stefano, L., Jensen, M. R. & Helin, K. (2003) EMBO J. 22, 6289-6298.
9. Adams, M. R., Sears, R., Nuckolls, F., Leone, G. & Nevins, J. R. (2000) Mol. Cell. Biol. 20, 3633-3639.
10. He, Y., Armanious, M. K., Thomas, M. J. & Cress, W. D. (2000) Oncogene 19, 3422-3433.
11. Leone, G., Nuckolls, F., Ishida, S., Adams, M., Sears, R., Jakoi, L., Miron, A. & Nevins, J. R. (2000) Mol. Cell. Biol. 20, 3626-3632.
12. Trimarchi, J. M. & Lees, J. A. (2002) Nat. Rev. Mol. Cell. Biol. 3, 11-20.
13. Dahme, T., Wood, J., Livingston, D. M. & Gaubatz, S. (2002) Eur. J. Biochem. 269, 5030-5036.
14. de Bruin, A., Maiti, B., Jakoi, L., Timmers, C., Buerki, R. & Leone, G. (2003) J. Biol Chem. 278, 42041-42049.
15. Muller, H., Bracken, A. P., Vernell, R., Moroni, M. C., Christians, F., Grassilli, E., Prosperini, E., Vigo, E., Oliner, J. D. & Helin, K. (2001) Genes Dev. 15, 267-285.
16. Trimarchi, J. M., Fairchild, B., Wen, J. & Lees, J. A. (2001) Proc. Natl. Acad. Sci. USA 98, 1519-1524.
17. DeGregori, J. (2002) Biochem. Biophys. Acta 1602, 131-150.
18. DeGregori, J., Leone, G., Miron, A., Jakoi, L. & Nevins, J. R. (1997) Proc. Natl. Acad. Sci. USA 94, 7245-7250.
19. Lukas, J., Petersen, B. O., Holm, K., Bartek, J. & Helin, K. (1996) Mol. Cell. Biol. 16, 1047-1057.
20. Verona, R., Moberg, K., Estes, S., Starz, M., Vernon, J. P. & Lees, J. A. (1997) Mol. Cell. Biol. 17, 7268-7282.
21. Takahashi, Y., Rayman, J. B. & Dynlacht, B. D. (2000) Genes Dev. 14, 804-816.
22. Giangrande, P., Zhu, W., Rempel, R. E., Laakso, K. & Nevins, J. R. (2004) EMBO J. 23, 1336-1347.
23. Meloni, A. R., Smith, E. J. & Nevins, J. R. (1999) Proc. Natl. Acad. Sci. USA 96, 9574-9579.
24. Yamamoto, K. R., Darimont, B. D., Wagner, R. L. & Iniguez-Lluhi, J. A. (1998) Cold Spring Harbor Symp. Quant. Biol. 63, 587-598.
25. Pilpel, Y., Sudarsanam, P. & Church, G. M. (2001) Nat. Genet. 29, 153-159.
26. Smale, S. T. (2001) Genes Dev. 15, 2515-2519.
27. Giangrande, P. H., Hallstrom, T. C., Tunyaplin, C., Calame, K. & Nevins, J. R. (2003) Mol. Cell. Biol. 23, 3707-3720.
28. Schlisio, S., Halperin, T., Vidal, M. & Nevins, J. R. (2002) EMBO J. 21, 5775-5786.
29. Robertson, E. J. (1987) in Teratocarcinomas and Embryonic Stem Cells: A Practical Approach, ed. Robertson, E. J. (IRL, Oxford), pp. 104-108.
30. Hallstrom, T. C. & Nevins, J. R. (2003) Proc. Natl. Acad. Sci. USA 100, 10848-10853.
31. Leone, G., DeGregori, J., Yan, Z., Jakoi, L., Ishida, S., Williams, R. S. & Nevins, J. R. (1998) Genes Dev. 12, 2120-2130.
32. Brazma, A., Hingamp, P., Quackenbush, J., Sherlock, G., Spellman, P., Stoeckert, C., Aach, J., Ansorge, W., Ball, C. A., Causton, H. C., et al. (2001) Nat. Genet. 29, 365-371.
33. Bolstad, B. M., Irizarry, R. A., Astrand, M. & Speed, T. P. (2003) Bioinformatics 19, 185-193.
34. West, M., Blanchette, C., Dressman, H., Huang, E., Ishida, S., Spang, R., Zuzan, H., Olson, J. A., Jr., Marks, J. R. & Nevins, J. R. (2001) Proc. Natl. Acad. Sci. USA 98, 11462-11467.
35. Johnson, D. G., Schwarz, J. K., Cress, W. D. & Nevins, J. R. (1993) Nature 365, 349-352.
36. Qin, X.-Q., Livingston, D. M., Kaelin, W. G. & Adams, P. D. (1994) Proc. Natl. Acad. Sci. USA 91, 10918-10922.
37. Shan, B. & Lee, W.-H. (1994) Mol. Cell. Biol. 14, 8166-8173.
38. Kowalik, T. F., DeGregori, J., Schwarz, J. K. & Nevins, J. R. (1995) J. Virol. 69, 2491-2500.
39. Wu, X. & Levine, A. J. (1994) Proc. Natl. Acad. Sci. USA 91, 3602-3606.
40. Al-Shahrour, F., Diaz-Uriarte, R. & Dopazo, J. (2004) Bioinformatics 20, 578-580.
41. The Gene Ontology Consortium (2000) Nat. Genet. 25, 25-29.
42. Zheng, N., Fraenkel, E., Pabo, C. O. & Pavletich, N. P. (1999) Genes Dev. 13, 666-674.
43. Lin, W.-C., Iin, F.-T. & Kevins, J. R. (2001) Genes Dev. 15, 1833-1845.
44. Neufeld, T. P., de la Cruz, A. F. A., Johnston, L. A. & Edgar, B. A. (1998) Cell 93, 1183-1193.