Comparative phylogenomics of the food-borne pathogen Campylobacter jejuni reveals genetic markers predictive of infection source

Proceedings of the National Academy of Sciences of the United States of America

Volumn 102, Issue 44, 2005, Pages 16043-16048

  Champion, Olivia L ^a   Gaunt, Michael W ^a   Gundogdu, Ozan ^a   Elmi, Abdi ^a   Witney, Adam A ^b   Hinds, Jason ^b   Dorrell, Nick ^a   Wren, Brendan W ^a  

^a LONDON SCHOOL OF HYGIENE AND TROPICAL MEDICINE   (United Kingdom)

^b ST GEORGE'S UNIVERSITY OF LONDON   (United Kingdom)

Author keywords

Bayesian based algorithm; Gastrointestinal pathogen; Microarray analysis

Indexed keywords

FLAGELLIN;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; BAYES THEOREM; CAMPYLOBACTER JEJUNI; CHICKEN; CLADISTICS; COMPARATIVE PHYLOGENOMICS; COW; DNA MICROARRAY; GASTROENTERITIS; GENE CLUSTER; GENE LOCUS; GENETIC MARKER; GENOTYPE; GLYCOSYLATION; GRAM NEGATIVE INFECTION; NONHUMAN; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SHEEP; STRAIN DIFFERENCE;

ANIMALS; ANIMALS, DOMESTIC; BAYES THEOREM; CAMPYLOBACTER INFECTIONS; CAMPYLOBACTER JEJUNI; FLAGELLIN; FOOD MICROBIOLOGY; GENETIC MARKERS; GENOME, BACTERIAL; HUMANS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PHYLOGENY; PROTEIN PROCESSING, POST-TRANSLATIONAL;

BACTERIA (MICROORGANISMS); CAMPYLOBACTER JEJUNI; GALLUS GALLUS; NEGIBACTERIA; OVIS ARIES;

EID: 27644572105     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0503252102     Document Type: Article

References (29)

1. Blaser, M. J., Berkowitz, I. D., LaForce, M., Cravens, J., Reller, B. & Wang, W.-L. L. (1979) Ann. Int. Med. 91, 179-185.
2. Ang, C. W., De Klerk, M. A., Endtz, H. P., Jacobs, B. C., Laman, J. D., Van Der Meche, F. G. A. & van Doorn, P. A. (2001) Infect. Immun. 69, 2462-2472.
3. Corry, J. E. & Atabay, H. I. (2001) Symp. Ser. Soc. Appl. Microbiol. 96S-114S.
4. Engberg, J., Gerner-Smidt, P., Scheutz, F., Moller Nielsen, E., On, S. L. & Molbak, K. (1998) Clin. Microbiol. Infect. 4, 648-656.
5. Wood, R. C., MacDonald, K. L. & Osterholm, M. T. (1992) J. Am. Med. Assoc. 268, 3228-3230.
6. Broman, T., Palmgren, H., Bergstrom, S., Sellin, M., Waldenstrom, J., Danielsson-Tham, M. L. & Olsen, B. (2002) J. Clin. Microbiol. 40, 4594-4602.
7. Dziejman, M., Balon, E., Boyd, D., Fraser. C. M., Heidelberg, J. F. & Mekalanos, J. J. (2002) Proc. Natl. Acad. Sci. USA 99, 1556-1561.
8. Perrin, A., Bonacorsi, S., Carbonnelle, E., Talibi, D., Dessen, P., Nassif, X. & Tinsley, C. (2002) Infect. Immun. 70, 7063-7072.
9. Hinchliffe, S. J., Isherwood, K. E., Stabler, R. A., Prentice, M. B., Rakin, A., Nichols, R. A., Oyston, P. C., Hinds, J., Titball, R. W. & Wren, B. W. (2003) Genome Res. 13, 2018-2029.
10. Dorrell, N., Mangan, J. A., Laing, K. G., Hinds, J., Linton, D., Al-Ghusein, H., Barrell, B. G., Parkhill, J., Stoker, N. G., Karlyshev, A. V., et al. (2001) Genome Res. 11, 1706-1715.
11. Leonard, E. E., 2nd, Takata, T., Blaser, M. J., Falkow, S., Tompkins, L. S. & Gaynor, E. C. (2003) J. Infect. Dis. 187, 691-694.
12. Pearson, B. M., Pin, C., Wright, J., I'Anson, K., Humphrey, T. & Wells, J. M. (2003) FEBS Lett. 554, 224-230.
13. Kim, C. C., Joyce, E. A., Chan, K. & Falkow, S. (2002) Genome Biol. 3, 1-17.
14. Taboada, E. N., Acedillo, R. R., Carrillo, C. D., Findlay, W. A., Medeiros, D. T., Mykytczuk, O. L., Roberts, M. J., Valencia, C. A., Farber, J. M. & Nash, J. H. (2004) J. Clin. Microbiol. 42, 4566-4576.
15. Leonard, E. E., 2nd, Tompkins, L. S., Falkow, S. & Nachamkin, I. (2004) Infect. Immun. 72, 1199-1203.
16. Moen, B., Oust, A., Langsrud, O., Dorrell, N., Hinds, J., Marsden, G., Kohler, A., Wren, B. W. & Rudi, K. (2005) Appl. Environ. Microbiol. 71, 2086-2094.
17. Rozen, S. & Skaletsky, H. (2000) Methods Mol. Biol. 132, 365-386.
18. Ronquist, F. & Huelsenbeck, J. P. (2003) Bioinformatics 19, 1572-1574.
19. Maddison, D. R. & Maddison, W. P. (2001) MACCLADE4: Analysis of Phylogeny and Character Evolution (Sinauer, Sunderland, MA).
20. The UK Intestinal Infectious Disease Study (2000) A Report of the Study of Infectious Intestinal Diseases in England (Her Majesty's Stationary Office, Norwich, U.K.).
21. Dingle, K. E., Colles, F. M., Wareing, D. R. A., Ure, R., Fox, A. J., Bolton, F. E., Bootsma, H. J., Willems, R. J. L., Urwin, R. & Maiden, M. C. J. (2001) J. Clin. Microbiol. 39, 14-23.
22. Castric, P., Cassels, F. J. & Carlson, R. W. (2001) J. Biol. Chem. 276, 26479-26485.
23. Schirm, M., Soo, E. C., Aubry, A. J., Austin, J., Thibault, P. & Logan, S. M. (2003) Mol. Microbiol. 48, 1579-1592.
24. Gavin, R., Rabaan, A. A., Merino, S., Tomas, J. M., Gryllos, I. & Shaw, J. G. (2002) Mol. Microbiol. 43, 383-397.
25. Arora, S. K., Wolfgang, M. C., Lory, S. & Ramphal, R. (2004) J. Bacteriol. 186, 2115-2122.
26. Takeuchi, K., Taguchi, F., Inagaki, Y., Toyoda, K. Shiraishi, T. & Ichinose, Y. (2003) J. Bacteriol. 185, 6658-6665.
27. Karlyshev, A. V., Linton, D., Gregson, N. A. & Wren, B. W. (2002) Microbiology 148, 473-480.
28. Dutta, P. R., Cappello, R., Navarro-Garcia, F. & Nataro, J. P. (2002) Infect. Immun. 70, 7105-7113.
29. Palmer, S. R., Gully, P. R., White, J. M., Pearson, A. D., Suckling, W. G., Jones, D. M., Rawes J. C. & Penner, J. L. (1983) Lancet 8319, 287-290.