-
1
-
-
0035319006
-
Computational studies of gene regulatory networks: In numero molecular biology
-
Hasty J, McMillen D, Isaacs F, Collins JJ, Computational studies of gene regulatory networks: in numero molecular biology. Nature Reviews Genetics 2001; 2(4):269-268.
-
(2001)
Nature Reviews Genetics
, vol.2
, Issue.4
, pp. 269-1268
-
-
Hasty, J.1
McMillen, D.2
Isaacs, F.3
Collins, J.J.4
-
2
-
-
0020827718
-
Differentiation in mouse melanoma cells: Initial reversibility and an in-off stochastic model
-
Bennett DC. Differentiation in mouse melanoma cells: initial reversibility and an in-off stochastic model. Cell 1983; 34(2):445-453.
-
(1983)
Cell
, vol.34
, Issue.2
, pp. 445-453
-
-
Bennett, D.C.1
-
3
-
-
0028327570
-
The expression of liver specific genes within rat embryonic hepatocytes is a discontinuous process
-
Dingemanse MA, De Boer PA, Moorman AF, Charles R, Lamers WH. The expression of liver specific genes within rat embryonic hepatocytes is a discontinuous process. Differentiation 1994; 56(3):153-162.
-
(1994)
Differentiation
, vol.56
, Issue.3
, pp. 153-162
-
-
Dingemanse, Ma.1
De Boer, P.A.2
Moorman, A.F.3
Charles, R.4
Lamers, W.H.5
-
4
-
-
0029155607
-
Enhancers increase the probability but not the leven of gene expression
-
Walters MC, Fiering S, Eidemiller J, Magis W, Groudine M, Martin DIK. Enhancers increase the probability but not the leven of gene expression. Proceedings of the National Academy of Sciences USA 1995; 92(15):7125-7129.
-
(1995)
Proceedings of the National Academy of Sciences USA
, vol.92
, Issue.15
, pp. 7125-7129
-
-
Walters, M.C.1
Fiering, S.2
Eidemiller, J.3
Magis, W.4
Groudine, M.5
Martin, D.I.K.6
-
5
-
-
0025127307
-
The dose dependence of glucocorticoid-inducible gene expression results from changes in the number of transcriptionally active templates
-
Ko M, Nakauchi SH, Takahashi N. The dose dependence of glucocorticoid-inducible gene expression results from changes in the number of transcriptionally active templates. EMBO Journal 1990; 9(9):2835-2842.
-
(1990)
EMBO Journal
, vol.9
, Issue.9
, pp. 2835-2842
-
-
Ko, M.1
Nakauchi, S.H.2
Takahashi, N.3
-
6
-
-
0031879114
-
Stochastic kinetic analysis of the developmental pathway bifurcation in phase λ-infected Escherichia coli cells
-
Arkin A, Ross J, McAdams HH. Stochastic kinetic analysis of the developmental pathway bifurcation in phase λ-infected Escherichia coli cells. Genetics 1998; 149(4):1633-1648.
-
(1998)
Genetics
, vol.149
, Issue.4
, pp. 1633-1648
-
-
Arkin, A.1
Ross, J.2
McAdams, H.H.3
-
7
-
-
0034688173
-
A synthetic oscillatory network of transcriptional regulators
-
Elowitz M, Leibler S. A synthetic oscillatory network of transcriptional regulators. Nature 2000; 403(6767):335-338.
-
(2000)
Nature
, vol.403
, Issue.6767
, pp. 335-338
-
-
Elowitz, M.1
Leibler, S.2
-
8
-
-
17144456808
-
Positive feedback in eukaryotic gene networks: Cell differentiation by graded binary response
-
Besckei A, Seraphin B, Serrano L. Positive feedback in eukaryotic gene networks: cell differentiation by graded binary response. EMBO Journal 2001; 20(10):2528-2535.
-
(2001)
EMBO Journal
, vol.20
, Issue.10
, pp. 2528-2535
-
-
Besckei, A.1
Seraphin, B.2
Serrano, L.3
-
9
-
-
0034688174
-
Construction of a genetic toggle switch in Escherichia coli
-
Gardner TS, Cantor CR, Collings JJ. Construction of a genetic toggle switch in Escherichia coli. Nature 2000; 403(6767):339-342.
-
(2000)
Nature
, vol.403
, Issue.6767
, pp. 339-342
-
-
Gardner, T.S.1
Cantor, C.R.2
Collings, J.J.3
-
12
-
-
0032496358
-
The biochemical basis for an all-or-none cell fate in xenopus oocytes
-
Ferrell JE, Machleder EM. The biochemical basis for an all-or-none cell fate in xenopus oocytes. Science 1998; 280(1):895-898.
-
(1998)
Science
, vol.280
, Issue.1
, pp. 895-898
-
-
Ferrell, J.E.1
Machleder, E.M.2
-
13
-
-
0034050722
-
Noise-based switches and amplifiers for gene expression
-
Hasty J, Pradines J, Dolnik J, Collins JJ. Noise-based switches and amplifiers for gene expression. Proceedings of the National Academy of Science USA 2000; 97(5):2075-2080.
-
(2000)
Proceedings of the National Academy of Science USA
, vol.97
, Issue.5
, pp. 2075-2080
-
-
Hasty, J.1
Pradines, J.2
Dolnik, J.3
Collins, J.J.4
-
14
-
-
0037197850
-
Mechanisms of noise resistance in genetic oscillators
-
Vilar J, Kueh HY, Barkai N, Leibler S. Mechanisms of noise resistance in genetic oscillators. Proceedings of the National Academy of Sciences USA 2002; 99(9):5988-5992.
-
(2002)
Proceedings of the National Academy of Sciences USA
, vol.99
, Issue.9
, pp. 5988-5992
-
-
Vilar, J.1
Kueh, H.Y.2
Barkai, N.3
Leibler, S.4
-
16
-
-
14544280668
-
Surviving heat shock: Control strategies for robustness and performance
-
El-Samad H, Kurata H, Doyle J, Gross C, Khammash M. Surviving heat shock: control strategies for robustness and performance. Proceedings of the National Academy of Sciences USA 2005; 102(8):2736-2741.
-
(2005)
Proceedings of the National Academy of Sciences USA
, vol.102
, Issue.8
, pp. 2736-2741
-
-
El-Samad, H.1
Kurata, H.2
Doyle, J.3
Gross, C.4
Khammash, M.5
-
17
-
-
44049109914
-
A rigorous derivation of the chemical master equation
-
Gillespie D. A rigorous derivation of the chemical master equation. Physica A 1992; 188:404-425.
-
(1992)
Physica A
, vol.188
, pp. 404-425
-
-
Gillespie, D.1
-
19
-
-
0017030517
-
A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
-
Gillespie D. A general method for numerically simulating the stochastic time evolution of coupled chemical reactions. Journal of Computational Physics 1976; 22(4):403-434.
-
(1976)
Journal of Computational Physics
, vol.22
, Issue.4
, pp. 403-434
-
-
Gillespie, D.1
-
20
-
-
0001601301
-
Stochastic approach to chemical kinetics
-
McQuarrie D. Stochastic approach to chemical kinetics. Journal of Applied Probability 1967; 4:413-478.
-
(1967)
Journal of Applied Probability
, vol.4
, pp. 413-478
-
-
McQuarrie, D.1
-
21
-
-
33645429016
-
Exact stochastic simulation of coupled chemical reactions
-
Gillespie D. Exact stochastic simulation of coupled chemical reactions. Journal of Physical Chemistry 1977; 81:2340-2361.
-
(1977)
Journal of Physical Chemistry
, vol.81
, pp. 2340-2361
-
-
Gillespie, D.1
-
22
-
-
0001144902
-
Efficient exact stochastic simulation of chemical systems with many species and many channels
-
Gibson M, Bruck J. Efficient exact stochastic simulation of chemical systems with many species and many channels. Journal of Physical Chemistry 2000; 104:1876-1889.
-
(2000)
Journal of Physical Chemistry
, vol.104
, pp. 1876-1889
-
-
Gibson, M.1
Bruck, J.2
-
23
-
-
4644266081
-
Efficient formulation of the stochastic simulation algorithm for chemically reacting systems
-
Cao Y, Li H. Petzold L. Efficient formulation of the stochastic simulation algorithm for chemically reacting systems. Journal of Chemical Physics 2004; 121(9):4059-4067.
-
(2004)
Journal of Chemical Physics
, vol.121
, Issue.9
, pp. 4059-4067
-
-
Cao, Y.1
Li, H.2
Petzold, L.3
-
24
-
-
0035933994
-
Approximate accelerated stochastic simulation of chemically reacting systems
-
Gillespie D. Approximate accelerated stochastic simulation of chemically reacting systems. Journal of Chemical Physics 2001; 115:1716-1733.
-
(2001)
Journal of Chemical Physics
, vol.115
, pp. 1716-1733
-
-
Gillespie, D.1
-
25
-
-
0242425970
-
Improved leap-size selection for accelerated stochastic simulation
-
Gillespie D, Petzold L. Improved leap-size selection for accelerated stochastic simulation. Journal of Chemical Physics 2003; 119:8229-8234.
-
(2003)
Journal of Chemical Physics
, vol.119
, pp. 8229-8234
-
-
Gillespie, D.1
Petzold, L.2
-
27
-
-
3142543968
-
Binomial leap methods for simulating stochastic chemical kinetics
-
Tian T, Burrage K. Binomial leap methods for simulating stochastic chemical kinetics. Journal of Chemical Physics 2004; 121:10356-10364.
-
(2004)
Journal of Chemical Physics
, vol.121
, pp. 10356-10364
-
-
Tian, T.1
Burrage, K.2
-
28
-
-
22944469465
-
Time accelerated Monte Carlo simulations of biological networks using the binomial tau-leap method
-
Chatterjee A, Vlachos D, Katsoulakis M. Time accelerated Monte Carlo simulations of biological networks using the binomial tau-leap method. Journal of Chemical Physics 2005; 122:014112.
-
(2005)
Journal of Chemical Physics
, vol.122
, pp. 014112
-
-
Chatterjee, A.1
Vlachos, D.2
Katsoulakis, M.3
-
30
-
-
0034225547
-
The chemical Langevin equation
-
Gillespie D. The chemical Langevin equation. Journal of Chemical Physics 2000; 113:297-306.
-
(2000)
Journal of Chemical Physics
, vol.113
, pp. 297-306
-
-
Gillespie, D.1
-
31
-
-
0037162152
-
The chemical Langevin and Fokker-Planck equations for the reversible isomerization reaction
-
Gillespie D. The chemical Langevin and Fokker-Planck equations for the reversible isomerization reaction. Journal of Physical Chemistry 2002; 106:5063-5071.
-
(2002)
Journal of Physical Chemistry
, vol.106
, pp. 5063-5071
-
-
Gillespie, D.1
-
32
-
-
0000660738
-
Strong approximation theorems for density dependent Markov chains
-
Kurtz T. Strong approximation theorems for density dependent Markov chains. Stochastic Processes and their Applications 1978; 6:223-240.
-
(1978)
Stochastic Processes and Their Applications
, vol.6
, pp. 223-240
-
-
Kurtz, T.1
-
34
-
-
0942279178
-
Stiffness in stochastic chemically reacting systems: The implicit tau-leaping method
-
Rathinam M, Petzold L, Cao Y, Gillespie D. Stiffness in stochastic chemically reacting systems: the implicit tau-leaping method. Journal of Chemical Physics 2003; 119:12784-12794.
-
(2003)
Journal of Chemical Physics
, vol.119
, pp. 12784-12794
-
-
Rathinam, M.1
Petzold, L.2
Cao, Y.3
Gillespie, D.4
-
35
-
-
0037109565
-
Approximate simulation of coupled fast and slow reactions for stochastic chemical kinetics
-
Haseltine E, Rawlings J. Approximate simulation of coupled fast and slow reactions for stochastic chemical kinetics. Journal of Chemical Physics 2002; 117:6959-6969.
-
(2002)
Journal of Chemical Physics
, vol.117
, pp. 6959-6969
-
-
Haseltine, E.1
Rawlings, J.2
-
38
-
-
0037444724
-
Stochastic chemical kinetics and the quasi steady-state assumption: Application to the Gillespie algorithm
-
Rao C, Arkin A. Stochastic chemical kinetics and the quasi steady-state assumption: application to the Gillespie algorithm. Journal of Chemical Physics 118 + 4999-5010. 2003.
-
(2003)
Journal of Chemical Physics
-
-
Rao, C.1
Arkin, A.2
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