-
1
-
-
0037163144
-
Design and implementation of microarray gene expression markup language (MAGE-ML)
-
RESEARCH0046
-
Spellman PT, Miller M, Stewart J, Troup C, Sarkans U, Chervitz S, Bernhart D, Sherlock G, Ball C, Lepage M, Swiatek M, Marks WL, Goncalves J, Markel S, Iordan D, Shojatalab M, Pizarro A, White J, Hubley R, Deutsch E, Senger M, Aronow BJ, Robinson A, Bassett D, Stoeckert CJ Jr, Brazma A: Design and implementation of microarray gene expression markup language (MAGE-ML). Genome Biol 2002:RESEARCH0046.
-
(2002)
Genome Biol.
-
-
Spellman, P.T.1
Miller, M.2
Stewart, J.3
Troup, C.4
Sarkans, U.5
Chervitz, S.6
Bernhart, D.7
Sherlock, G.8
Ball, C.9
Lepage, M.10
Swiatek, M.11
Marks, W.L.12
Goncalves, J.13
Markel, S.14
Iordan, D.15
Shojatalab, M.16
Pizarro, A.17
White, J.18
Hubley, R.19
Deutsch, E.20
Senger, M.21
Aronow, B.J.22
Robinson, A.23
Bassett, D.24
Stoeckert Jr., C.J.25
Brazma, A.26
more..
-
2
-
-
0742323374
-
The HUPO PSI's molecular interaction format-a community standard for the representation of protein interaction data
-
Hermjakob H, Montecchi-Palazzi L, Bader G, Wojcik J, Salwinski L, Ceol A, Moore S, Orchard S, Sarkans U, von Mering C, Roechert B, Poux S, Jung E, Mersch H, Kersey P, Lappe M, Li Y, Zeng R, Rana D, Nikolski M, Husi H, Brun C, Shanker K, Grant SG, Sander C, Bork P, Zhu W, Pandey A, Brazma A, Jacq B, Vidal M, Sherman D, Legrain P, Cesareni G, Xenarios I, Eisenberg D, Steipe B, Hogue C, Apweiler R: The HUPO PSI's molecular interaction format-a community standard for the representation of protein interaction data. Nat Biotechnol 2004, 22:177-183.
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 177-183
-
-
Hermjakob, H.1
Montecchi-Palazzi, L.2
Bader, G.3
Wojcik, J.4
Salwinski, L.5
Ceol, A.6
Moore, S.7
Orchard, S.8
Sarkans, U.9
von Mering, C.10
Roechert, B.11
Poux, S.12
Jung, E.13
Mersch, H.14
Kersey, P.15
Lappe, M.16
Li, Y.17
Zeng, R.18
Rana, D.19
Nikolski, M.20
Husi, H.21
Brun, C.22
Shanker, K.23
Grant, S.G.24
Sander, C.25
Bork, P.26
Zhu, W.27
Pandey, A.28
Brazma, A.29
Jacq, B.30
Vidal, M.31
Sherman, D.32
Legrain, P.33
Cesareni, G.34
Xenarios, I.35
Eisenberg, D.36
Steipe, B.37
Hogue, C.38
Apweiler, R.39
more..
-
3
-
-
84874649129
-
PSI-MS XML Data Format
-
PSI-MS XML Data Format [http://psidev.sourceforge.net/ms/]
-
-
-
-
4
-
-
8344284323
-
A common open representation of mass spectrometry data and its application to proteomics research
-
Pedrioli PG, Eng JK, Hubley R, Vogelzang M, Deutsch EW, Raught B, Pratt B, Nilsson E, Angeletti RH, Apweiler R, Cheung K, Costello CE, Hermjakob H, Huang S, Julian RK, Kapp E, McComb ME, Oliver SG, Omenn G, Paton NW, Simpson R, Smith R, Taylor CF, Zhu W, Aebersold R: A common open representation of mass spectrometry data and its application to proteomics research. Nat Biotechnol 2004, 22:1459-1466.
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 1459-1466
-
-
Pedrioli, P.G.1
Eng, J.K.2
Hubley, R.3
Vogelzang, M.4
Deutsch, E.W.5
Raught, B.6
Pratt, B.7
Nilsson, E.8
Angeletti, R.H.9
Apweiler, R.10
Cheung, K.11
Costello, C.E.12
Hermjakob, H.13
Huang, S.14
Julian, R.K.15
Kapp, E.16
McComb, M.E.17
Oliver, S.G.18
Omenn, G.19
Paton, N.W.20
Simpson, R.21
Smith, R.22
Taylor, C.F.23
Zhu, W.24
Aebersold, R.25
more..
-
5
-
-
0037337307
-
A systematic approach to modeling, capturing, and disseminating proteomics experimental data
-
Taylor CF, Paton NW, Garwood KL, Kirby PD, Stead DA, Yin Z, Deutsch EW, Selway L, Walker J, Riba-Garcia I, Mohammed S, Deery MJ, Howard JA, Dunkley T, Aebersold R, Kell DB, Lilley KS, Roepstorff P, Yates JR 3rd, Brass A, Brown AJ, Cash P, Gaskell SJ, Hubbard SJ, Oliver SG: A systematic approach to modeling, capturing, and disseminating proteomics experimental data. Nat Biotechnol 2003, 21:247-254.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 247-254
-
-
Taylor, C.F.1
Paton, N.W.2
Garwood, K.L.3
Kirby, P.D.4
Stead, D.A.5
Yin, Z.6
Deutsch, E.W.7
Selway, L.8
Walker, J.9
Riba-Garcia, I.10
Mohammed, S.11
Deery, M.J.12
Howard, J.A.13
Dunkley, T.14
Aebersold, R.15
Kell, D.B.16
Lilley, K.S.17
Roepstorff, P.18
Yates III, J.R.19
Brass, A.20
Brown, A.J.21
Cash, P.22
Gaskell, S.J.23
Hubbard, S.J.24
Oliver, S.G.25
more..
-
6
-
-
3543116593
-
An object model and database for functional genomics
-
Jones A, Hunt E, Wastling JM, Pizarro A, Stoeckert CJ Jr: An object model and database for functional genomics. Bioinformatics 2004, 20:1583-1590.
-
(2004)
Bioinformatics
, vol.20
, pp. 1583-1590
-
-
Jones, A.1
Hunt, E.2
Wastling, J.M.3
Pizarro, A.4
Stoeckert Jr., C.J.5
-
7
-
-
3543151034
-
CEBS Object Model for Systems Biology Data, CEBS MAGE SysBio-OM
-
Xirasagar S, Gustafson S, Merrick BA, Tomer KB, Stasiewicz S, Chan DD, Yost KJ 3rd,Yates JR 3rd, Sumner S, Xiao N, Waters MD: CEBS Object Model for Systems Biology Data, CEBS MAGE SysBio-OM. Bioinformatics 2004, 20:2004-2015.
-
(2004)
Bioinformatics
, vol.20
, pp. 2004-2015
-
-
Xirasagar, S.1
Gustafson, S.2
Merrick, B.A.3
Tomer, K.B.4
Stasiewicz, S.5
Chan, D.D.6
Yost III, K.J.7
Yates III, J.R.8
Sumner, S.9
Xiao, N.10
Waters, M.D.11
-
8
-
-
18444391785
-
The CCPN project: An interim report on a data model for the NMR community
-
Fogh R, Ionides J, Ulrich E, Boucher W, Vranken W, Linge JP, Habeck M, Rieping W, Bhat TN, Westbrook J, Henrick K, Gilliland G, Berman H, Thornton J, Nilges M, Markley J, Laue E: The CCPN project: an interim report on a data model for the NMR community. Nat Struct Biol 2002, 9:416-418.
-
(2002)
Nat. Struct. Biol.
, vol.9
, pp. 416-418
-
-
Fogh, R.1
Ionides, J.2
Ulrich, E.3
Boucher, W.4
Vranken, W.5
Linge, J.P.6
Habeck, M.7
Rieping, W.8
Bhat, T.N.9
Westbrook, J.10
Henrick, K.11
Gilliland, G.12
Berman, H.13
Thornton, J.14
Nilges, M.15
Markley, J.16
Laue, E.17
-
9
-
-
19944398727
-
A proposed framework for the description of plant metabolomics experiments and their results
-
Jenkins H, Hardy N, Beckmann M, Draper J, Smith AR, Taylor J, Fiehn O, Goodacre R, Bino RJ, Hall R, Kopka J, Lane GA, Lange BM, Liu JR, Mendes P, Nikolau BJ, Oliver SG, Paton NW, Rhee S, Roessner-Tunali U, Saito K, Smedsgaard J, Sumner LW, Wang T, Walsh S, Wurtele ES, Kell DB: A proposed framework for the description of plant metabolomics experiments and their results. Nat Biotechnol 2004, 22:1601-1606.
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 1601-1606
-
-
Jenkins, H.1
Hardy, N.2
Beckmann, M.3
Draper, J.4
Smith, A.R.5
Taylor, J.6
Fiehn, O.7
Goodacre, R.8
Bino, R.J.9
Hall, R.10
Kopka, J.11
Lane, G.A.12
Lange, B.M.13
Liu, J.R.14
Mendes, P.15
Nikolau, B.J.16
Oliver, S.G.17
Paton, N.W.18
Rhee, S.19
Roessner-Tunali, U.20
Saito, K.21
Smedsgaard, J.22
Sumner, L.W.23
Wang, T.24
Walsh, S.25
Wurtele, E.S.26
Kell, D.B.27
more..
-
10
-
-
84872207963
-
FlyBase, A Database of the Drosophila Genome
-
FlyBase, A Database of the Drosophila Genome [http://flybase.bio.indiana.edu/]
-
-
-
-
11
-
-
84874018544
-
The NCBI Taxonomy Homepage
-
The NCBI Taxonomy Homepage [http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/]
-
-
-
-
12
-
-
34748812695
-
Unified Modeling Language
-
Unified Modeling Language [http://www-uml.org/]
-
-
-
-
13
-
-
70349152114
-
GML - The Geography Markup Language
-
GML - the Geography Markup Language [http://opengis.net/gml/]
-
-
-
-
15
-
-
9144233086
-
PEDRo: A database for storing, searching and disseminating experimental proteomics data
-
Garwood K, McLaughlin T, Garwood C, Joens S, Morrison N, Taylor CF, Carroll K, Evans C, Whetton AD, Hart S, Stead D, Yin Z, Brown AJ, Hesketh A, Ghater K, Wilsson L, Mewissen M, Ghazal P, Howard J, Lilley KS, Gaskell SJ, Hubbard SJ, Oliver SG, Paton NW: PEDRo: A database for storing, searching and disseminating experimental proteomics data. BMC Genomics 2004, 5:68.
-
(2004)
BMC Genomics
, vol.5
, pp. 68
-
-
Garwood, K.1
McLaughlin, T.2
Garwood, C.3
Joens, S.4
Morrison, N.5
Taylor, C.F.6
Carroll, K.7
Evans, C.8
Whetton, A.D.9
Hart, S.10
Stead, D.11
Yin, Z.12
Brown, A.J.13
Hesketh, A.14
Chater, K.15
Hansson, L.16
Mewissen, M.17
Ghazal, P.18
Howard, J.19
Lilley, K.S.20
Gaskell, S.J.21
Brass, A.22
Hubbard, S.J.23
Oliver, S.G.24
Paton, N.W.25
more..
-
16
-
-
84885691421
-
Standards for Exchange of Instrument Data and NIST Chemical Reference Data - SpectroML
-
Standards for Exchange of Instrument Data and NIST Chemical Reference Data - SpectroML [http://www.mel.nist.gov/div826/msid/sima/03_spectro.html]
-
-
-
-
17
-
-
84885691001
-
Standards for Chromatography Data Systems, ASTM Adopts Protocols for Analytical Data Interchange (Andi)
-
Standards for chromatography data systems, ASTM adopts protocols for analytical data interchange (Andi) [http://pubs.acs.org/hotartcl/tcaw/98/may/stan.html]
-
-
-
-
18
-
-
84885682621
-
Analytical Information Markup Language (AnIML)
-
Analytical Information Markup Language (AnIML) [http://animl.sourceforge.net/]
-
-
-
-
19
-
-
84885683350
-
The Proteomics Standards Initiative
-
The Proteomics Standards Initiative [http://psidev.sourceforge.net/]
-
-
-
-
20
-
-
0024406857
-
A novel genetic system to detect protein-protein interactions
-
Fields S, Song O: A novel genetic system to detect protein-protein interactions. Nature 1989, 340:245-246.
-
(1989)
Nature
, vol.340
, pp. 245-246
-
-
Fields, S.1
Song, O.2
-
21
-
-
1642569547
-
Protein-protein Interaction Networks: From Interactions to Networks
-
Cho S, Park SG, Lee do H, Park BC: Protein-protein Interaction Networks: from Interactions to Networks. J Biochem Mol Biol 2004, 37:45-52.
-
(2004)
J. Biochem. Mol. Biol.
, vol.37
, pp. 45-52
-
-
Cho, S.1
Park, S.G.2
Lee do, H.3
Park, B.C.4
-
22
-
-
0034887203
-
Creating the gene ontology resource: Design and implementation
-
The Gene Ontology Consortium
-
The Gene Ontology Consortium: Creating the gene ontology resource: design and implementation. Genome Res 2001, 11:1425-1433.
-
(2001)
Genome Res.
, vol.11
, pp. 1425-1433
-
-
-
23
-
-
0037294354
-
The MGED ontology: A framework for describing functional genomics experiments
-
Stoeckert CJ, Parkinson H: The MGED ontology: a framework for describing functional genomics experiments. Comp Funct Genom 2003, 4:127-132.
-
(2003)
Comp. Funct. Genom.
, vol.4
, pp. 127-132
-
-
Stoeckert, C.J.1
Parkinson, H.2
|